RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 ERC1Q8IUD2 1116 aa12.85□□□□□ -0.35
VPS4B-204ENST00000589604 SPOCK2Q92563 424 aa12.85□□□□□ -0.35
VPS4B-204ENST00000589604 ZBTB47Q9UFB7 747 aaPredicted RBP12.85□□□□□ -0.35
VPS4B-204ENST00000589604 POLLQ9UGP5 575 aa12.85□□□□□ -0.35
VPS4B-204ENST00000589604 CCDC88AQ3V6T2 1871 aa12.84□□□□□ -0.35
VPS4B-204ENST00000589604 TAF5LO75529 589 aa12.84□□□□□ -0.35
VPS4B-204ENST00000589604 CHRNDQ07001 517 aa12.84□□□□□ -0.35
VPS4B-204ENST00000589604 TTC22Q5TAA0 569 aa12.84□□□□□ -0.35
VPS4B-204ENST00000589604 TMC4Q7Z404 712 aa12.84□□□□□ -0.35
VPS4B-204ENST00000589604 OS9Q13438 667 aaPredicted RBP12.83□□□□□ -0.35
VPS4B-204ENST00000589604 TAF7LQ5H9L4 462 aa12.83□□□□□ -0.35
VPS4B-204ENST00000589604 MPNDQ8N594 471 aa12.83□□□□□ -0.35
VPS4B-204ENST00000589604 VGLL2Q8N8G2 317 aa12.83□□□□□ -0.35
VPS4B-204ENST00000589604 EAF2Q96CJ1 260 aaPredicted RBP12.83□□□□□ -0.35
VPS4B-204ENST00000589604 MPHOSPH8Q99549 860 aa12.83□□□□□ -0.35
VPS4B-204ENST00000589604 BCL11AQ9H165 835 aa12.83□□□□□ -0.35
VPS4B-204ENST00000589604 ZNF277Q9NRM2 450 aaPredicted RBP12.83□□□□□ -0.35
VPS4B-204ENST00000589604 NSFL1CQ9UNZ2 370 aaKnown RBP12.83□□□□□ -0.35
VPS4B-204ENST00000589604 RBM19Q9Y4C8 960 aaKnown RBP12.83□□□□□ -0.35
VPS4B-204ENST00000589604 AK9Q5TCS8 1911 aa12.83□□□□□ -0.36
VPS4B-204ENST00000589604 EYA2O00167 538 aa12.83□□□□□ -0.36
VPS4B-204ENST00000589604 GRIN3BO60391 1043 aa12.83□□□□□ -0.36
VPS4B-204ENST00000589604 MX1P20591 662 aa12.83□□□□□ -0.36
VPS4B-204ENST00000589604 KLRK1P26718 216 aa12.83□□□□□ -0.36
VPS4B-204ENST00000589604 FKBP4Q02790 459 aaKnown RBP eCLIP12.83□□□□□ -0.36
VPS4B-204ENST00000589604 TSHZ3Q63HK5 1081 aa12.83□□□□□ -0.36
VPS4B-204ENST00000589604 TBC1D16Q8TBP0 767 aa12.83□□□□□ -0.36
VPS4B-204ENST00000589604 PSMD1Q99460 953 aa12.83□□□□□ -0.36
VPS4B-204ENST00000589604 RTFDC1Q9BY42 306 aaPredicted RBP12.83□□□□□ -0.36
VPS4B-204ENST00000589604 CNNM1Q9NRU3 951 aa12.83□□□□□ -0.36
VPS4B-204ENST00000589604 CIAO1O76071 339 aa12.82□□□□□ -0.36
VPS4B-204ENST00000589604 SEC24BO95487 1268 aa12.82□□□□□ -0.36
VPS4B-204ENST00000589604 TFCP2Q12800 502 aa12.82□□□□□ -0.36
VPS4B-204ENST00000589604 SOGA3Q5TF21 947 aa12.82□□□□□ -0.36
VPS4B-204ENST00000589604 CC2D2BQ6DHV5 1058 aa12.82□□□□□ -0.36
VPS4B-204ENST00000589604 DPP8Q6V1X1 898 aaPredicted RBP12.82□□□□□ -0.36
VPS4B-204ENST00000589604 RTKN2Q8IZC4 609 aa12.82□□□□□ -0.36
VPS4B-204ENST00000589604 TAOK3Q9H2K8 898 aa12.82□□□□□ -0.36
VPS4B-204ENST00000589604 AOX1Q06278 1338 aa12.82□□□□□ -0.36
VPS4B-204ENST00000589604 LTBP3Q9NS15 1303 aa12.82□□□□□ -0.36
VPS4B-204ENST00000589604 IRS2Q9Y4H2 1338 aa12.82□□□□□ -0.36
VPS4B-204ENST00000589604 YY1P25490 414 aa12.81□□□□□ -0.36
VPS4B-204ENST00000589604 XDHP47989 1333 aa12.81□□□□□ -0.36
VPS4B-204ENST00000589604 TXNRD3Q86VQ6 643 aa12.81□□□□□ -0.36
VPS4B-204ENST00000589604 CLASRPQ8N2M8 674 aaKnown RBP12.81□□□□□ -0.36
VPS4B-204ENST00000589604 PI4K2BQ8TCG2 481 aa12.81□□□□□ -0.36
VPS4B-204ENST00000589604 ANKIB1Q9P2G1 1089 aa12.81□□□□□ -0.36
VPS4B-204ENST00000589604 UFL1O94874 794 aa12.8□□□□□ -0.36
VPS4B-204ENST00000589604 IL15P40933 162 aaPredicted RBP12.8□□□□□ -0.36
VPS4B-204ENST00000589604 AOC3Q16853 763 aa12.8□□□□□ -0.36
VPS4B-204ENST00000589604 SDSP20132 328 aa12.8□□□□□ -0.36
VPS4B-204ENST00000589604 AACSQ86V21 672 aa12.8□□□□□ -0.36
VPS4B-204ENST00000589604 GPR108Q9NPR9 543 aa12.8□□□□□ -0.36
VPS4B-204ENST00000589604 TLR7Q9NYK1 1049 aaKnown RBP12.8□□□□□ -0.36
VPS4B-204ENST00000589604 GGA1Q9UJY5 639 aa12.8□□□□□ -0.36
VPS4B-204ENST00000589604 DICER1Q9UPY3 1922 aaKnown RBP12.79□□□□□ -0.36
VPS4B-204ENST00000589604 MROH5Q6ZUA9 1318 aa12.79□□□□□ -0.36
VPS4B-204ENST00000589604 TIAM2Q8IVF5 1701 aa12.79□□□□□ -0.36
VPS4B-204ENST00000589604 C6orf229H3BNL8 230 aa12.79□□□□□ -0.36
VPS4B-204ENST00000589604 RIMBP2O15034 1052 aa12.79□□□□□ -0.36
VPS4B-204ENST00000589604 TNNI3KQ59H18 835 aa12.79□□□□□ -0.36
VPS4B-204ENST00000589604 METTL24Q5JXM2 366 aa12.79□□□□□ -0.36
VPS4B-204ENST00000589604 C9orf131Q5VYM1 1079 aa12.79□□□□□ -0.36
VPS4B-204ENST00000589604 CCDC8Q9H0W5 538 aaPredicted RBP12.79□□□□□ -0.36
VPS4B-204ENST00000589604 FPGT-TNNI3KV9GXZ4 949 aa12.79□□□□□ -0.36
VPS4B-204ENST00000589604 ZNF804BA4D1E1 1349 aa12.78□□□□□ -0.36
VPS4B-204ENST00000589604 TTC41PQ6P2S7 1318 aa12.78□□□□□ -0.36
VPS4B-204ENST00000589604 LMNB1P20700 586 aa12.78□□□□□ -0.36
VPS4B-204ENST00000589604 FGFR2P21802 821 aa12.78□□□□□ -0.36
VPS4B-204ENST00000589604 IARSP41252 1262 aaKnown RBP12.78□□□□□ -0.36
VPS4B-204ENST00000589604 ANKRD2Q9GZV1 360 aa12.78□□□□□ -0.36
VPS4B-204ENST00000589604 RNF181Q9P0P0 153 aa12.78□□□□□ -0.36
VPS4B-204ENST00000589604 DBNLQ9UJU6 430 aaKnown RBP12.78□□□□□ -0.36
VPS4B-204ENST00000589604 ZNF609O15014 1411 aa12.78□□□□□ -0.36
VPS4B-204ENST00000589604 PDE8BO95263 885 aa12.77□□□□□ -0.36
VPS4B-204ENST00000589604 IFIT2P09913 472 aaKnown RBP12.77□□□□□ -0.36
VPS4B-204ENST00000589604 ATP2B4P23634 1241 aa12.77□□□□□ -0.36
VPS4B-204ENST00000589604 KIAA2012Q0VF49 1180 aa12.77□□□□□ -0.36
VPS4B-204ENST00000589604 MKRN4PQ13434 485 aaPredicted RBP12.77□□□□□ -0.36
VPS4B-204ENST00000589604 DOK7Q18PE1 504 aa12.77□□□□□ -0.36
VPS4B-204ENST00000589604 GRIPAP1Q4V328 841 aa12.77□□□□□ -0.36
VPS4B-204ENST00000589604 TMX4Q9H1E5 349 aaPredicted RBP12.77□□□□□ -0.36
VPS4B-204ENST00000589604 KCNQ5Q9NR82 932 aa12.77□□□□□ -0.36
VPS4B-204ENST00000589604 LEMD3Q9Y2U8 911 aa12.77□□□□□ -0.36
VPS4B-204ENST00000589604 CHD4Q14839 1912 aa12.77□□□□□ -0.37
VPS4B-204ENST00000589604 SCN9AQ15858 1988 aa12.77□□□□□ -0.37
VPS4B-204ENST00000589604 YDJCA8MPS7 323 aa12.77□□□□□ -0.37
VPS4B-204ENST00000589604 PPIP5K2O43314 1243 aa12.77□□□□□ -0.37
VPS4B-204ENST00000589604 WASHC4Q2M389 1173 aa12.77□□□□□ -0.37
VPS4B-204ENST00000589604 TBC1D9Q6ZT07 1266 aa12.77□□□□□ -0.37
VPS4B-204ENST00000589604 ECHDC1Q9NTX5 307 aa12.77□□□□□ -0.37
VPS4B-204ENST00000589604 ZNF646O15015 1829 aaPredicted RBP12.76□□□□□ -0.37
VPS4B-204ENST00000589604 MED23Q9ULK4 1368 aa12.76□□□□□ -0.37
VPS4B-204ENST00000589604 ARAP2Q8WZ64 1704 aa12.76□□□□□ -0.37
VPS4B-204ENST00000589604 DBNDD2Q9BQY9 259 aa12.76□□□□□ -0.37
VPS4B-204ENST00000589604 DBNDD1Q9H9R9 158 aa12.76□□□□□ -0.37
VPS4B-204ENST00000589604 AKAP11Q9UKA4 1901 aa12.76□□□□□ -0.37
VPS4B-204ENST00000589604 ADORA1P30542 326 aa12.75□□□□□ -0.37
VPS4B-204ENST00000589604 TIMM10P62072 90 aa12.75□□□□□ -0.37
VPS4B-204ENST00000589604 UBE4AQ14139 1066 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms