RNA–Protein interactions for RNA: ENST00000583877.5

NUP85-223, Transcript of nucleoporin 85, human

TSL 3

Gene NUP85, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP85-223	ENST00000583877	ANGEL2	Q5VTE6	544 aa	Known RBP	11.35	□□□□□ -0.59
NUP85-223	ENST00000583877	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	11.35	□□□□□ -0.59
NUP85-223	ENST00000583877	GGA1	Q9UJY5	639 aa		11.35	□□□□□ -0.59
NUP85-223	ENST00000583877	TRIM35	Q9UPQ4	493 aa		11.35	□□□□□ -0.59
NUP85-223	ENST00000583877	RBBP6	Q7Z6E9	1792 aa	Known RBP	11.35	□□□□□ -0.59
NUP85-223	ENST00000583877	GSE1	Q14687	1217 aa		11.34	□□□□□ -0.59
NUP85-223	ENST00000583877	RALBP1	Q15311	655 aa		11.34	□□□□□ -0.59
NUP85-223	ENST00000583877	PRPF38B	Q5VTL8	546 aa	Known RBP	11.34	□□□□□ -0.59
NUP85-223	ENST00000583877	GML	Q99445	158 aa		11.34	□□□□□ -0.59
NUP85-223	ENST00000583877	MYOZ2	Q9NPC6	264 aa		11.34	□□□□□ -0.59
NUP85-223	ENST00000583877	SEC31B	Q9NQW1	1179 aa		11.34	□□□□□ -0.59
NUP85-223	ENST00000583877	USP17L8	P0C7I0	530 aa		11.33	□□□□□ -0.6
NUP85-223	ENST00000583877	PRR29	P0C7W0	189 aa		11.33	□□□□□ -0.6
NUP85-223	ENST00000583877	NUBP1	P53384	320 aa		11.33	□□□□□ -0.6
NUP85-223	ENST00000583877	CCDC152	Q4G0S7	254 aa		11.33	□□□□□ -0.6
NUP85-223	ENST00000583877	DUSP27	Q5VZP5	1158 aa		11.33	□□□□□ -0.6
NUP85-223	ENST00000583877	RIC3	Q7Z5B4	369 aa		11.33	□□□□□ -0.6
NUP85-223	ENST00000583877	CCDC146	Q8IYE0	955 aa		11.33	□□□□□ -0.6
NUP85-223	ENST00000583877	RUNDC1	Q96C34	613 aa		11.33	□□□□□ -0.6
NUP85-223	ENST00000583877	HPS5	Q9UPZ3	1129 aa		11.33	□□□□□ -0.6
NUP85-223	ENST00000583877		A0A1B0GUL6	1792 aa		11.33	□□□□□ -0.6
NUP85-223	ENST00000583877	XDH	P47989	1333 aa		11.33	□□□□□ -0.6
NUP85-223	ENST00000583877	USP17L3	A6NCW0	530 aa		11.32	□□□□□ -0.6
NUP85-223	ENST00000583877	USP17L4	A6NCW7	530 aa		11.32	□□□□□ -0.6
NUP85-223	ENST00000583877	PDE8A	O60658	829 aa		11.32	□□□□□ -0.6
NUP85-223	ENST00000583877	GOLGA2	Q08379	1002 aa		11.32	□□□□□ -0.6
NUP85-223	ENST00000583877	NOM1	Q5C9Z4	860 aa	Known RBP	11.32	□□□□□ -0.6
NUP85-223	ENST00000583877	USP17L1	Q7RTZ2	530 aa		11.32	□□□□□ -0.6
NUP85-223	ENST00000583877	PODN	Q7Z5L7	613 aa		11.32	□□□□□ -0.6
NUP85-223	ENST00000583877	CCDC191	Q8NCU4	936 aa		11.32	□□□□□ -0.6
NUP85-223	ENST00000583877	HDAC9	Q9UKV0	1011 aa		11.32	□□□□□ -0.6
NUP85-223	ENST00000583877	PCCA	P05165	728 aa	Predicted RBP	11.31	□□□□□ -0.6
NUP85-223	ENST00000583877	ATP2B4	P23634	1241 aa		11.31	□□□□□ -0.6
NUP85-223	ENST00000583877	TM4SF4	P48230	202 aa		11.31	□□□□□ -0.6
NUP85-223	ENST00000583877	MOB2	Q70IA6	237 aa		11.31	□□□□□ -0.6
NUP85-223	ENST00000583877	ZNF296	Q8WUU4	475 aa	Predicted RBP	11.31	□□□□□ -0.6
NUP85-223	ENST00000583877	MYD88	Q99836	296 aa		11.31	□□□□□ -0.6
NUP85-223	ENST00000583877	MED23	Q9ULK4	1368 aa		11.3	□□□□□ -0.6
NUP85-223	ENST00000583877	CEP290	O15078	2479 aa		11.3	□□□□□ -0.6
NUP85-223	ENST00000583877	UBE2Q2L	H0YL09	131 aa		11.3	□□□□□ -0.6
NUP85-223	ENST00000583877	TBC1D8	O95759	1140 aa		11.3	□□□□□ -0.6
NUP85-223	ENST00000583877	ANKRD18A	Q8IVF6	992 aa		11.3	□□□□□ -0.6
NUP85-223	ENST00000583877	MBIP	Q9NS73	344 aa		11.3	□□□□□ -0.6
NUP85-223	ENST00000583877	CWC25	Q9NXE8	425 aa	Predicted RBP	11.3	□□□□□ -0.6
NUP85-223	ENST00000583877	GPR25	O00155	361 aa		11.29	□□□□□ -0.6
NUP85-223	ENST00000583877	NF2	P35240	595 aa		11.29	□□□□□ -0.6
NUP85-223	ENST00000583877	MMP14	P50281	582 aa		11.29	□□□□□ -0.6
NUP85-223	ENST00000583877	WDR43	Q15061	677 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
NUP85-223	ENST00000583877	NBPF9	Q3BBW0	867 aa		11.29	□□□□□ -0.6
NUP85-223	ENST00000583877	SPRYD3	Q8NCJ5	442 aa		11.29	□□□□□ -0.6
NUP85-223	ENST00000583877	CDC5L	Q99459	802 aa	Known RBP	11.29	□□□□□ -0.6
NUP85-223	ENST00000583877	CFHR5	Q9BXR6	569 aa		11.29	□□□□□ -0.6
NUP85-223	ENST00000583877	PHAX	Q9H814	394 aa	Known RBP	11.29	□□□□□ -0.6
NUP85-223	ENST00000583877	SCAF8	Q9UPN6	1271 aa	Known RBP	11.29	□□□□□ -0.6
NUP85-223	ENST00000583877	MYO3B	Q8WXR4	1341 aa		11.29	□□□□□ -0.6
NUP85-223	ENST00000583877	MYBBP1A	Q9BQG0	1328 aa	Known RBP	11.29	□□□□□ -0.6
NUP85-223	ENST00000583877	ZNF853	P0CG23	659 aa		11.28	□□□□□ -0.6
NUP85-223	ENST00000583877	SREBF2	Q12772	1141 aa		11.28	□□□□□ -0.6
NUP85-223	ENST00000583877	TTLL12	Q14166	644 aa	Predicted RBP	11.28	□□□□□ -0.6
NUP85-223	ENST00000583877	DACT2	Q5SW24	774 aa		11.28	□□□□□ -0.6
NUP85-223	ENST00000583877	PRAMEF18	Q5VWM3	479 aa		11.28	□□□□□ -0.6
NUP85-223	ENST00000583877	FBXO46	Q6PJ61	603 aa	Predicted RBP	11.28	□□□□□ -0.6
NUP85-223	ENST00000583877	OGFOD1	Q8N543	542 aa		11.28	□□□□□ -0.6
NUP85-223	ENST00000583877	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.28	□□□□□ -0.6
NUP85-223	ENST00000583877	METTL22	Q9BUU2	404 aa	Predicted RBP	11.28	□□□□□ -0.6
NUP85-223	ENST00000583877	OTOF	Q9HC10	1997 aa		11.28	□□□□□ -0.6
NUP85-223	ENST00000583877	WNT10B	O00744	389 aa		11.27	□□□□□ -0.61
NUP85-223	ENST00000583877	DDX58	O95786	925 aa	Known RBP	11.27	□□□□□ -0.61
NUP85-223	ENST00000583877	CTSW	P56202	376 aa		11.27	□□□□□ -0.61
NUP85-223	ENST00000583877	STRIP1	Q5VSL9	837 aa		11.27	□□□□□ -0.61
NUP85-223	ENST00000583877	JARID2	Q92833	1246 aa	Predicted RBP	11.27	□□□□□ -0.61
NUP85-223	ENST00000583877	BSDC1	Q9NW68	430 aa	Predicted RBP	11.27	□□□□□ -0.61
NUP85-223	ENST00000583877	IFT57	Q9NWB7	429 aa		11.27	□□□□□ -0.61
NUP85-223	ENST00000583877	MINPP1	Q9UNW1	487 aa		11.27	□□□□□ -0.61
NUP85-223	ENST00000583877	COL1A1	P02452	1464 aa	Predicted RBP	11.26	□□□□□ -0.61
NUP85-223	ENST00000583877	WTIP	A6NIX2	430 aa	Predicted RBP	11.26	□□□□□ -0.61
NUP85-223	ENST00000583877	FKTN	O75072	461 aa		11.26	□□□□□ -0.61
NUP85-223	ENST00000583877	CCT4	P50991	539 aa	Known RBP	11.26	□□□□□ -0.61
NUP85-223	ENST00000583877	GNAI1	P63096	354 aa		11.26	□□□□□ -0.61
NUP85-223	ENST00000583877	ARMC9	Q7Z3E5	817 aa		11.26	□□□□□ -0.61
NUP85-223	ENST00000583877	APOBEC3F	Q8IUX4	373 aa	Known RBP	11.26	□□□□□ -0.61
NUP85-223	ENST00000583877	TTLL11	Q8NHH1	800 aa		11.26	□□□□□ -0.61
NUP85-223	ENST00000583877	MXD3	Q9BW11	206 aa		11.26	□□□□□ -0.61
NUP85-223	ENST00000583877	CHMP4A	Q9BY43	222 aa		11.26	□□□□□ -0.61
NUP85-223	ENST00000583877	COA1	Q9GZY4	146 aa		11.26	□□□□□ -0.61
NUP85-223	ENST00000583877	ADAMTS8	Q9UP79	889 aa		11.26	□□□□□ -0.61
NUP85-223	ENST00000583877	ELL2	O00472	640 aa	Predicted RBP	11.25	□□□□□ -0.61
NUP85-223	ENST00000583877	PTPN12	Q05209	780 aa	Known RBP	11.25	□□□□□ -0.61
NUP85-223	ENST00000583877	CALD1	Q05682	793 aa	Known RBP	11.25	□□□□□ -0.61
NUP85-223	ENST00000583877	MKRN3	Q13064	507 aa	Known RBP	11.25	□□□□□ -0.61
NUP85-223	ENST00000583877	LDLRAD1	Q5T700	205 aa		11.25	□□□□□ -0.61
NUP85-223	ENST00000583877	FBXW7	Q969H0	707 aa		11.25	□□□□□ -0.61
NUP85-223	ENST00000583877	GCC1	Q96CN9	775 aa		11.25	□□□□□ -0.61
NUP85-223	ENST00000583877	SASH1	O94885	1247 aa		11.24	□□□□□ -0.61
NUP85-223	ENST00000583877	ALDH1A1	P00352	501 aa		11.24	□□□□□ -0.61
NUP85-223	ENST00000583877	MNX1	P50219	401 aa	Predicted RBP	11.24	□□□□□ -0.61
NUP85-223	ENST00000583877	CCDC30	Q5VVM6	783 aa		11.24	□□□□□ -0.61
NUP85-223	ENST00000583877	SPRYD7	Q5W111	196 aa		11.24	□□□□□ -0.61
NUP85-223	ENST00000583877	GREM2	Q9H772	168 aa		11.24	□□□□□ -0.61
NUP85-223	ENST00000583877	MAP3K2	Q9Y2U5	619 aa		11.24	□□□□□ -0.61

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