RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 IGKV5-2P06315 115 aa28.15■■■□□ 2.1
SHMT1-210ENST00000583780 ZEB1P37275 1124 aaPredicted RBP28.15■■■□□ 2.1
SHMT1-210ENST00000583780 ZNF296Q8WUU4 475 aaPredicted RBP28.15■■■□□ 2.1
SHMT1-210ENST00000583780 BSDC1Q9NW68 430 aaPredicted RBP28.15■■■□□ 2.1
SHMT1-210ENST00000583780 MAP3K2Q9Y2U5 619 aa28.14■■■□□ 2.1
SHMT1-210ENST00000583780 MYH3P11055 1940 aa28.14■■■□□ 2.09
SHMT1-210ENST00000583780 MED23Q9ULK4 1368 aa28.13■■■□□ 2.09
SHMT1-210ENST00000583780 WNT10BO00744 389 aa28.13■■■□□ 2.09
SHMT1-210ENST00000583780 CTSWP56202 376 aa28.13■■■□□ 2.09
SHMT1-210ENST00000583780 TXNRD3Q86VQ6 643 aa28.13■■■□□ 2.09
SHMT1-210ENST00000583780 CDC5LQ99459 802 aaKnown RBP28.13■■■□□ 2.09
SHMT1-210ENST00000583780 SPEF2Q9C093 1822 aa28.13■■■□□ 2.09
SHMT1-210ENST00000583780 CCT4P50991 539 aaKnown RBP28.12■■■□□ 2.09
SHMT1-210ENST00000583780 PKN2Q16513 984 aaKnown RBP28.12■■■□□ 2.09
SHMT1-210ENST00000583780 GREM2Q9H772 168 aa28.12■■■□□ 2.09
SHMT1-210ENST00000583780 DDX58O95786 925 aaKnown RBP28.11■■■□□ 2.09
SHMT1-210ENST00000583780 KSR2Q6VAB6 950 aa28.11■■■□□ 2.09
SHMT1-210ENST00000583780 TSPYL6Q8N831 410 aa28.11■■■□□ 2.09
SHMT1-210ENST00000583780 PI4KAP2A4QPH2 592 aa28.1■■■□□ 2.09
SHMT1-210ENST00000583780 STRIP1Q5VSL9 837 aa28.1■■■□□ 2.09
SHMT1-210ENST00000583780 CCDC30Q5VVM6 783 aa28.1■■■□□ 2.09
SHMT1-210ENST00000583780 PI4KAP1Q8N8J0 262 aa28.1■■■□□ 2.09
SHMT1-210ENST00000583780 HDAC9Q9UKV0 1011 aa28.1■■■□□ 2.09
SHMT1-210ENST00000583780 GPR25O00155 361 aa28.09■■■□□ 2.09
SHMT1-210ENST00000583780 NOM1Q5C9Z4 860 aaKnown RBP28.09■■■□□ 2.09
SHMT1-210ENST00000583780 COA1Q9GZY4 146 aa28.09■■■□□ 2.09
SHMT1-210ENST00000583780 PTPN12Q05209 780 aaKnown RBP28.08■■■□□ 2.09
SHMT1-210ENST00000583780 OGFOD1Q8N543 542 aa28.08■■■□□ 2.09
SHMT1-210ENST00000583780 R3HDMLQ9H3Y0 253 aa28.08■■■□□ 2.09
SHMT1-210ENST00000583780 CALD1Q05682 793 aaKnown RBP28.07■■■□□ 2.08
SHMT1-210ENST00000583780 TTLL12Q14166 644 aaPredicted RBP28.07■■■□□ 2.08
SHMT1-210ENST00000583780 ZBED3Q96IU2 234 aaPredicted RBP28.07■■■□□ 2.08
SHMT1-210ENST00000583780 H7C1W4 665 aa28.06■■■□□ 2.08
SHMT1-210ENST00000583780 MKRN3Q13064 507 aaKnown RBP28.06■■■□□ 2.08
SHMT1-210ENST00000583780 CWF19L2Q2TBE0 894 aaKnown RBP28.06■■■□□ 2.08
SHMT1-210ENST00000583780 PRPF38BQ5VTL8 546 aaKnown RBP28.06■■■□□ 2.08
SHMT1-210ENST00000583780 LEMD3Q9Y2U8 911 aa28.06■■■□□ 2.08
SHMT1-210ENST00000583780 MYO3BQ8WXR4 1341 aa28.06■■■□□ 2.08
SHMT1-210ENST00000583780 SASH1O94885 1247 aa28.05■■■□□ 2.08
SHMT1-210ENST00000583780 TTLL5Q6EMB2 1281 aa28.05■■■□□ 2.08
SHMT1-210ENST00000583780 CFHR5Q9BXR6 569 aa28.05■■■□□ 2.08
SHMT1-210ENST00000583780 NEURL1BA8MQ27 555 aa28.04■■■□□ 2.08
SHMT1-210ENST00000583780 KLRK1P26718 216 aa28.04■■■□□ 2.08
SHMT1-210ENST00000583780 MMP14P50281 582 aa28.04■■■□□ 2.08
SHMT1-210ENST00000583780 LDLRAD1Q5T700 205 aa28.04■■■□□ 2.08
SHMT1-210ENST00000583780 FBXW7Q969H0 707 aa28.04■■■□□ 2.08
SHMT1-210ENST00000583780 NF2P35240 595 aa28.03■■■□□ 2.08
SHMT1-210ENST00000583780 CHMP4AQ9BY43 222 aa28.03■■■□□ 2.08
SHMT1-210ENST00000583780 PRKRIP1Q9H875 184 aaPredicted RBP28.03■■■□□ 2.08
SHMT1-210ENST00000583780 PRKG1Q13976 671 aa28.02■■■□□ 2.08
SHMT1-210ENST00000583780 FBXO46Q6PJ61 603 aaPredicted RBP28.02■■■□□ 2.08
SHMT1-210ENST00000583780 G2E3Q7L622 706 aa28.02■■■□□ 2.08
SHMT1-210ENST00000583780 ZNF804BA4D1E1 1349 aa28.01■■■□□ 2.07
SHMT1-210ENST00000583780 ARMC9Q7Z3E5 817 aa28.01■■■□□ 2.07
SHMT1-210ENST00000583780 KIAA0825Q8IV33 1275 aa28.01■■■□□ 2.07
SHMT1-210ENST00000583780 SREBF2Q12772 1141 aa28■■■□□ 2.07
SHMT1-210ENST00000583780 SPRYD7Q5W111 196 aa28■■■□□ 2.07
SHMT1-210ENST00000583780 UBE3BQ7Z3V4 1068 aa28■■■□□ 2.07
SHMT1-210ENST00000583780 PLA2G12BQ9BX93 195 aa28■■■□□ 2.07
SHMT1-210ENST00000583780 FZD1Q9UP38 647 aa28■■■□□ 2.07
SHMT1-210ENST00000583780 FKTNO75072 461 aa27.99■■■□□ 2.07
SHMT1-210ENST00000583780 CSF1RP07333 972 aa27.99■■■□□ 2.07
SHMT1-210ENST00000583780 CASP7P55210 303 aa27.99■■■□□ 2.07
SHMT1-210ENST00000583780 GTF2IP78347 998 aa27.99■■■□□ 2.07
SHMT1-210ENST00000583780 NEXNQ0ZGT2 675 aa27.99■■■□□ 2.07
SHMT1-210ENST00000583780 IGHMBP2P38935 993 aaKnown RBP27.98■■■□□ 2.07
SHMT1-210ENST00000583780 APOBEC3FQ8IUX4 373 aaKnown RBP27.98■■■□□ 2.07
SHMT1-210ENST00000583780 ANGEL1Q9UNK9 670 aaKnown RBP27.98■■■□□ 2.07
SHMT1-210ENST00000583780 ITGA6P23229 1130 aa27.97■■■□□ 2.07
SHMT1-210ENST00000583780 TSR2Q969E8 191 aaKnown RBP27.97■■■□□ 2.07
SHMT1-210ENST00000583780 ANKRD2Q9GZV1 360 aa27.97■■■□□ 2.07
SHMT1-210ENST00000583780 CD209Q9NNX6 404 aa27.97■■■□□ 2.07
SHMT1-210ENST00000583780 IRS2Q9Y4H2 1338 aa27.96■■■□□ 2.07
SHMT1-210ENST00000583780 GCKRQ14397 625 aa27.96■■■□□ 2.07
SHMT1-210ENST00000583780 SNAP23O00161 211 aa27.95■■■□□ 2.06
SHMT1-210ENST00000583780 MAP3K11Q16584 847 aa27.95■■■□□ 2.06
SHMT1-210ENST00000583780 CERS5Q8N5B7 392 aa27.95■■■□□ 2.06
SHMT1-210ENST00000583780 DEFB129Q9H1M3 183 aa27.95■■■□□ 2.06
SHMT1-210ENST00000583780 PCDHAC2Q9Y5I4 1007 aa27.95■■■□□ 2.06
SHMT1-210ENST00000583780 SLC4A2P04920 1241 aa27.94■■■□□ 2.06
SHMT1-210ENST00000583780 CHRNDQ07001 517 aa27.94■■■□□ 2.06
SHMT1-210ENST00000583780 STK31Q9BXU1 1019 aa27.94■■■□□ 2.06
SHMT1-210ENST00000583780 MTMR14Q8NCE2 650 aa27.93■■■□□ 2.06
SHMT1-210ENST00000583780 MPHOSPH8Q99549 860 aa27.93■■■□□ 2.06
SHMT1-210ENST00000583780 ALDH1A1P00352 501 aa27.92■■■□□ 2.06
SHMT1-210ENST00000583780 INHBEP58166 350 aa27.92■■■□□ 2.06
SHMT1-210ENST00000583780 IFNL1Q8IU54 200 aa27.92■■■□□ 2.06
SHMT1-210ENST00000583780 SLC10A4Q96EP9 437 aa27.92■■■□□ 2.06
SHMT1-210ENST00000583780 ECM29Q5VYK3 1845 aa27.91■■■□□ 2.06
SHMT1-210ENST00000583780 DLGAP5Q15398 846 aa27.91■■■□□ 2.06
SHMT1-210ENST00000583780 TWISTNBQ3B726 338 aaPredicted RBP27.91■■■□□ 2.06
SHMT1-210ENST00000583780 CLMNQ96JQ2 1002 aa27.91■■■□□ 2.06
SHMT1-210ENST00000583780 LAMB1P07942 1786 aa27.91■■■□□ 2.06
SHMT1-210ENST00000583780 MANSC4A6NHS7 340 aaPredicted RBP27.9■■■□□ 2.06
SHMT1-210ENST00000583780 C15orf52Q6ZUT6 534 aaKnown RBP27.9■■■□□ 2.06
SHMT1-210ENST00000583780 SSC5DA1L4H1 1573 aa27.9■■■□□ 2.06
SHMT1-210ENST00000583780 IGF2BP3O00425 579 aaKnown RBP eCLIP27.89■■■□□ 2.06
SHMT1-210ENST00000583780 TAF5LO75529 589 aa27.89■■■□□ 2.06
SHMT1-210ENST00000583780 WNK4Q96J92 1243 aa27.89■■■□□ 2.06
SHMT1-210ENST00000583780 PRMT6Q96LA8 375 aaPredicted RBP27.89■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms