RNA–Protein interactions for RNA: ENST00000573309.5

CIITA-209, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 3,366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-209ENST00000573309 COPRSQ9NQ92 184 aa14.28□□□□□ -0.12
CIITA-209ENST00000573309 LRMPQ12912 555 aa14.28□□□□□ -0.12
CIITA-209ENST00000573309 STK3Q13188 491 aa14.28□□□□□ -0.12
CIITA-209ENST00000573309 WASHC4Q2M389 1173 aa14.28□□□□□ -0.12
CIITA-209ENST00000573309 FEZ1Q99689 392 aa14.28□□□□□ -0.12
CIITA-209ENST00000573309 CCNL1Q9UK58 526 aaPredicted RBP14.28□□□□□ -0.12
CIITA-209ENST00000573309 CASTP20810 708 aaKnown RBP14.27□□□□□ -0.12
CIITA-209ENST00000573309 C3orf67Q6ZVT6 689 aa14.27□□□□□ -0.12
CIITA-209ENST00000573309 CHST3Q7LGC8 479 aa14.27□□□□□ -0.12
CIITA-209ENST00000573309 JAKMIP1Q96N16 626 aaKnown RBP14.27□□□□□ -0.12
CIITA-209ENST00000573309 PHLPP1O60346 1717 aa14.27□□□□□ -0.12
CIITA-209ENST00000573309 SGSM2O43147 1006 aa14.27□□□□□ -0.13
CIITA-209ENST00000573309 IFIT1P09914 478 aaKnown RBP14.27□□□□□ -0.13
CIITA-209ENST00000573309 TTLL11Q8NHH1 800 aa14.27□□□□□ -0.13
CIITA-209ENST00000573309 WWC3Q9ULE0 1092 aa14.27□□□□□ -0.13
CIITA-209ENST00000573309 UTYO14607 1347 aa14.27□□□□□ -0.13
CIITA-209ENST00000573309 KCPQ6ZWJ8 1503 aa14.27□□□□□ -0.13
CIITA-209ENST00000573309 CRYBG1Q9Y4K1 1723 aa14.27□□□□□ -0.13
CIITA-209ENST00000573309 STX6O43752 255 aa14.26□□□□□ -0.13
CIITA-209ENST00000573309 VPS53Q5VIR6 699 aa14.26□□□□□ -0.13
CIITA-209ENST00000573309 ZBTB38Q8NAP3 1195 aaPredicted RBP14.26□□□□□ -0.13
CIITA-209ENST00000573309 C16orf45Q96MC5 204 aaPredicted RBP14.26□□□□□ -0.13
CIITA-209ENST00000573309 PXDNLA1KZ92 1463 aa14.26□□□□□ -0.13
CIITA-209ENST00000573309 F13A1P00488 732 aa14.26□□□□□ -0.13
CIITA-209ENST00000573309 HAND2P61296 217 aa14.26□□□□□ -0.13
CIITA-209ENST00000573309 RAB11FIP4Q86YS3 637 aa14.26□□□□□ -0.13
CIITA-209ENST00000573309 NRBP1Q9UHY1 535 aa14.26□□□□□ -0.13
CIITA-209ENST00000573309 SLFN14P0C7P3 912 aa14.26□□□□□ -0.13
CIITA-209ENST00000573309 DNM1Q05193 864 aaKnown RBP14.26□□□□□ -0.13
CIITA-209ENST00000573309 TTC39AQ5SRH9 613 aa14.26□□□□□ -0.13
CIITA-209ENST00000573309 IL17RAQ96F46 866 aa14.26□□□□□ -0.13
CIITA-209ENST00000573309 AK2P54819 239 aa14.25□□□□□ -0.13
CIITA-209ENST00000573309 XAGE2Q96GT9 111 aa14.25□□□□□ -0.13
CIITA-209ENST00000573309 NHSL1Q5SYE7 1610 aa14.25□□□□□ -0.13
CIITA-209ENST00000573309 RABL6Q3YEC7 729 aaPredicted RBP14.25□□□□□ -0.13
CIITA-209ENST00000573309 NECAB1Q8N987 351 aa14.25□□□□□ -0.13
CIITA-209ENST00000573309 GJD4Q96KN9 370 aaPredicted RBP14.25□□□□□ -0.13
CIITA-209ENST00000573309 SNX14Q9Y5W7 946 aa14.25□□□□□ -0.13
CIITA-209ENST00000573309 TUBGCP6Q96RT7 1819 aa14.25□□□□□ -0.13
CIITA-209ENST00000573309 IDH1O75874 414 aaKnown RBP14.25□□□□□ -0.13
CIITA-209ENST00000573309 HSPA4P34932 840 aa14.25□□□□□ -0.13
CIITA-209ENST00000573309 EIF5P55010 431 aaKnown RBP14.25□□□□□ -0.13
CIITA-209ENST00000573309 CCDC83Q8IWF9 413 aa14.25□□□□□ -0.13
CIITA-209ENST00000573309 CHMP4CQ96CF2 233 aa14.25□□□□□ -0.13
CIITA-209ENST00000573309 EVI5LQ96CN4 794 aa14.25□□□□□ -0.13
CIITA-209ENST00000573309 MPHOSPH8Q99549 860 aa14.25□□□□□ -0.13
CIITA-209ENST00000573309 LARGE1O95461 756 aa14.24□□□□□ -0.13
CIITA-209ENST00000573309 ERFEQ4G0M1 354 aa14.24□□□□□ -0.13
CIITA-209ENST00000573309 RUFY3Q7L099 469 aa14.24□□□□□ -0.13
CIITA-209ENST00000573309 CCDC186Q7Z3E2 898 aa14.24□□□□□ -0.13
CIITA-209ENST00000573309 SMC3Q9UQE7 1217 aa14.24□□□□□ -0.13
CIITA-209ENST00000573309 RBM8AQ9Y5S9 174 aaKnown RBP14.24□□□□□ -0.13
CIITA-209ENST00000573309 JCADQ9P266 1359 aa14.24□□□□□ -0.13
CIITA-209ENST00000573309 ANKRD18BA2A2Z9 1011 aa14.24□□□□□ -0.13
CIITA-209ENST00000573309 VPS37CA5D8V6 355 aaPredicted RBP14.24□□□□□ -0.13
CIITA-209ENST00000573309 TPM3P06753 285 aa14.24□□□□□ -0.13
CIITA-209ENST00000573309 ZAP70P43403 619 aa14.24□□□□□ -0.13
CIITA-209ENST00000573309 CTSWP56202 376 aa14.24□□□□□ -0.13
CIITA-209ENST00000573309 LUZP1Q86V48 1076 aa14.24□□□□□ -0.13
CIITA-209ENST00000573309 DDX41Q9UJV9 622 aaKnown RBP14.24□□□□□ -0.13
CIITA-209ENST00000573309 DISP2A7MBM2 1401 aa14.24□□□□□ -0.13
CIITA-209ENST00000573309 PCCAP05165 728 aaPredicted RBP14.23□□□□□ -0.13
CIITA-209ENST00000573309 IL6STP40189 918 aaPredicted RBP14.23□□□□□ -0.13
CIITA-209ENST00000573309 VPS72Q15906 364 aa14.23□□□□□ -0.13
CIITA-209ENST00000573309 SLC4A8Q2Y0W8 1093 aa14.23□□□□□ -0.13
CIITA-209ENST00000573309 LSG1Q9H089 658 aaKnown RBP14.23□□□□□ -0.13
CIITA-209ENST00000573309 TBC1D9BQ66K14 1250 aa14.23□□□□□ -0.13
CIITA-209ENST00000573309 TTLL5Q6EMB2 1281 aa14.23□□□□□ -0.13
CIITA-209ENST00000573309 TTC14Q96N46 770 aa14.23□□□□□ -0.13
CIITA-209ENST00000573309 TTC41PQ6P2S7 1318 aa14.23□□□□□ -0.13
CIITA-209ENST00000573309 BCL9LQ86UU0 1499 aa14.23□□□□□ -0.13
CIITA-209ENST00000573309 IL15P40933 162 aaPredicted RBP14.23□□□□□ -0.13
CIITA-209ENST00000573309 FAM196AQ6ZSG2 479 aa14.23□□□□□ -0.13
CIITA-209ENST00000573309 VGLL3A8MV65 326 aa14.22□□□□□ -0.13
CIITA-209ENST00000573309 GOLGA6L6A8MZA4 724 aa14.22□□□□□ -0.13
CIITA-209ENST00000573309 CAMK4Q16566 473 aa14.22□□□□□ -0.13
CIITA-209ENST00000573309 UTP14AQ9BVJ6 771 aaKnown RBP14.22□□□□□ -0.13
CIITA-209ENST00000573309 TNNT1P13805 278 aa14.22□□□□□ -0.13
CIITA-209ENST00000573309 COL16A1Q07092 1604 aaPredicted RBP14.22□□□□□ -0.13
CIITA-209ENST00000573309 ABCA3Q99758 1704 aa14.22□□□□□ -0.13
CIITA-209ENST00000573309 MRC1P22897 1456 aa14.22□□□□□ -0.13
CIITA-209ENST00000573309 TNS2Q63HR2 1409 aa14.22□□□□□ -0.13
CIITA-209ENST00000573309 SMTNL1A8MU46 457 aa14.22□□□□□ -0.13
CIITA-209ENST00000573309 CAMTA2O94983 1202 aa14.22□□□□□ -0.13
CIITA-209ENST00000573309 PHKA1P46020 1223 aa14.22□□□□□ -0.13
CIITA-209ENST00000573309 FERMT3Q86UX7 667 aa14.22□□□□□ -0.13
CIITA-209ENST00000573309 GPR101Q96P66 508 aaPredicted RBP14.22□□□□□ -0.13
CIITA-209ENST00000573309 PAG1Q9NWQ8 432 aa14.22□□□□□ -0.13
CIITA-209ENST00000573309 THRAP3Q9Y2W1 955 aaKnown RBP14.22□□□□□ -0.13
CIITA-209ENST00000573309 MRVI1Q9Y6F6 885 aa14.22□□□□□ -0.13
CIITA-209ENST00000573309 SH3TC1Q8TE82 1336 aa14.21□□□□□ -0.13
CIITA-209ENST00000573309 TOGARAM1Q9Y4F4 1720 aa14.21□□□□□ -0.13
CIITA-209ENST00000573309 APPP05067 770 aa14.21□□□□□ -0.13
CIITA-209ENST00000573309 CCDC192P0DO97 292 aa14.21□□□□□ -0.13
CIITA-209ENST00000573309 GABPB1Q06547 395 aaPredicted RBP14.21□□□□□ -0.13
CIITA-209ENST00000573309 CDCA7Q9BWT1 371 aaPredicted RBP14.21□□□□□ -0.13
CIITA-209ENST00000573309 RAD50Q92878 1312 aa14.21□□□□□ -0.13
CIITA-209ENST00000573309 ZPR1O75312 459 aa14.21□□□□□ -0.13
CIITA-209ENST00000573309 KIF18AQ8NI77 898 aa14.21□□□□□ -0.13
CIITA-209ENST00000573309 MORC2Q9Y6X9 1032 aaPredicted RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms