RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 TAF1P21675 1872 aa25.7■■□□□ 1.7
VPS53-210ENST00000571456 MTX1Q13505 466 aa25.69■■□□□ 1.7
VPS53-210ENST00000571456 LARGE2Q8N3Y3 721 aa25.69■■□□□ 1.7
VPS53-210ENST00000571456 ANKRD44Q8N8A2 993 aa25.69■■□□□ 1.7
VPS53-210ENST00000571456 CHMP3Q9Y3E7 222 aa25.69■■□□□ 1.7
VPS53-210ENST00000571456 LRRFIP2Q9Y608 721 aaKnown RBP25.69■■□□□ 1.7
VPS53-210ENST00000571456 CELF1Q92879 486 aaKnown RBP25.68■■□□□ 1.7
VPS53-210ENST00000571456 SEC31BQ9NQW1 1179 aa25.68■■□□□ 1.7
VPS53-210ENST00000571456 BSDC1Q9NW68 430 aaPredicted RBP25.68■■□□□ 1.7
VPS53-210ENST00000571456 COG6Q9Y2V7 657 aa25.68■■□□□ 1.7
VPS53-210ENST00000571456 CCDC85AQ96PX6 553 aaPredicted RBP25.67■■□□□ 1.7
VPS53-210ENST00000571456 MPHOSPH8Q99549 860 aa25.67■■□□□ 1.7
VPS53-210ENST00000571456 ADARB2Q9NS39 739 aaKnown RBP25.67■■□□□ 1.7
VPS53-210ENST00000571456 NOGQ13253 232 aa25.66■■□□□ 1.7
VPS53-210ENST00000571456 AAMPQ13685 434 aa25.66■■□□□ 1.7
VPS53-210ENST00000571456 TAF7LQ5H9L4 462 aa25.66■■□□□ 1.7
VPS53-210ENST00000571456 FBXO3Q9UK99 471 aa25.66■■□□□ 1.7
VPS53-210ENST00000571456 CENPBP07199 599 aaPredicted RBP25.65■■□□□ 1.7
VPS53-210ENST00000571456 GLIS2Q9BZE0 524 aaPredicted RBP25.65■■□□□ 1.7
VPS53-210ENST00000571456 GPRC5DQ9NZD1 345 aa25.65■■□□□ 1.7
VPS53-210ENST00000571456 VPS33BQ9H267 617 aa25.64■■□□□ 1.7
VPS53-210ENST00000571456 ZBTB40Q9NUA8 1239 aa25.64■■□□□ 1.7
VPS53-210ENST00000571456 C20orf194Q5TEA3 1177 aa25.63■■□□□ 1.69
VPS53-210ENST00000571456 NIM1KQ8IY84 436 aa25.63■■□□□ 1.69
VPS53-210ENST00000571456 SUPT20HQ8NEM7 779 aa25.63■■□□□ 1.69
VPS53-210ENST00000571456 SPEF2Q9C093 1822 aa25.63■■□□□ 1.69
VPS53-210ENST00000571456 ZIC5Q96T25 663 aa25.62■■□□□ 1.69
VPS53-210ENST00000571456 ANKRD2Q9GZV1 360 aa25.62■■□□□ 1.69
VPS53-210ENST00000571456 ZNF408Q9H9D4 720 aa25.62■■□□□ 1.69
VPS53-210ENST00000571456 SUPT16HQ9Y5B9 1047 aaKnown RBP25.62■■□□□ 1.69
VPS53-210ENST00000571456 MPNDQ8N594 471 aa25.61■■□□□ 1.69
VPS53-210ENST00000571456 PODXL2Q9NZ53 605 aa25.61■■□□□ 1.69
VPS53-210ENST00000571456 PGAP2Q9UHJ9 254 aa25.61■■□□□ 1.69
VPS53-210ENST00000571456 LDHAL6AQ6ZMR3 332 aa25.6■■□□□ 1.69
VPS53-210ENST00000571456 RPAP2Q8IXW5 612 aaPredicted RBP25.6■■□□□ 1.69
VPS53-210ENST00000571456 XDHP47989 1333 aa25.6■■□□□ 1.69
VPS53-210ENST00000571456 AKAP11Q9UKA4 1901 aa25.59■■□□□ 1.69
VPS53-210ENST00000571456 SRGAP3O43295 1099 aa25.59■■□□□ 1.69
VPS53-210ENST00000571456 DPP8Q6V1X1 898 aaPredicted RBP25.59■■□□□ 1.69
VPS53-210ENST00000571456 RTFDC1Q9BY42 306 aaPredicted RBP25.59■■□□□ 1.69
VPS53-210ENST00000571456 COPRSQ9NQ92 184 aa25.59■■□□□ 1.69
VPS53-210ENST00000571456 ATP8B2P98198 1209 aa25.58■■□□□ 1.69
VPS53-210ENST00000571456 CNNM1Q9NRU3 951 aa25.58■■□□□ 1.69
VPS53-210ENST00000571456 SAGE1Q9NXZ1 904 aa25.58■■□□□ 1.69
VPS53-210ENST00000571456 MROH5Q6ZUA9 1318 aa25.58■■□□□ 1.69
VPS53-210ENST00000571456 RFX5P48382 616 aaPredicted RBP25.57■■□□□ 1.68
VPS53-210ENST00000571456 ZC3H15Q8WU90 426 aaKnown RBP25.57■■□□□ 1.68
VPS53-210ENST00000571456 MINPP1Q9UNW1 487 aa25.57■■□□□ 1.68
VPS53-210ENST00000571456 COL4A1P02462 1669 aa25.57■■□□□ 1.68
VPS53-210ENST00000571456 PPIP5K2O43314 1243 aa25.56■■□□□ 1.68
VPS53-210ENST00000571456 HMMRO75330 724 aa25.56■■□□□ 1.68
VPS53-210ENST00000571456 CIAO1O76071 339 aa25.56■■□□□ 1.68
VPS53-210ENST00000571456 HUNKP57058 714 aa25.56■■□□□ 1.68
VPS53-210ENST00000571456 PTPN12Q05209 780 aaKnown RBP25.56■■□□□ 1.68
VPS53-210ENST00000571456 CDC37L1Q7L3B6 337 aa25.56■■□□□ 1.68
VPS53-210ENST00000571456 ANKIB1Q9P2G1 1089 aa25.56■■□□□ 1.68
VPS53-210ENST00000571456 NSFL1CQ9UNZ2 370 aaKnown RBP25.56■■□□□ 1.68
VPS53-210ENST00000571456 ATP2B4P23634 1241 aa25.55■■□□□ 1.68
VPS53-210ENST00000571456 GMPSP49915 693 aaPredicted RBP25.55■■□□□ 1.68
VPS53-210ENST00000571456 SSH3Q8TE77 659 aa25.55■■□□□ 1.68
VPS53-210ENST00000571456 EYA3Q99504 573 aa25.55■■□□□ 1.68
VPS53-210ENST00000571456 LEMD3Q9Y2U8 911 aa25.55■■□□□ 1.68
VPS53-210ENST00000571456 EYA2O00167 538 aa25.54■■□□□ 1.68
VPS53-210ENST00000571456 CXCL9Q07325 125 aa25.54■■□□□ 1.68
VPS53-210ENST00000571456 POLA2Q14181 598 aa25.54■■□□□ 1.68
VPS53-210ENST00000571456 CEP85Q6P2H3 762 aa25.54■■□□□ 1.68
VPS53-210ENST00000571456 GGA1Q9UJY5 639 aa25.54■■□□□ 1.68
VPS53-210ENST00000571456 A0A1B0GUL6 1792 aa25.54■■□□□ 1.68
VPS53-210ENST00000571456 AOC3Q16853 763 aa25.53■■□□□ 1.68
VPS53-210ENST00000571456 ZNF594Q96JF6 807 aaPredicted RBP25.53■■□□□ 1.68
VPS53-210ENST00000571456 ZNRF3Q9ULT6 936 aa25.53■■□□□ 1.68
VPS53-210ENST00000571456 RIPOR2Q9Y4F9 1068 aa25.53■■□□□ 1.68
VPS53-210ENST00000571456 IL15P40933 162 aaPredicted RBP25.52■■□□□ 1.68
VPS53-210ENST00000571456 HIRAP54198 1017 aaPredicted RBP25.52■■□□□ 1.68
VPS53-210ENST00000571456 GPSM2P81274 684 aa25.52■■□□□ 1.68
VPS53-210ENST00000571456 CHRNDQ07001 517 aa25.52■■□□□ 1.68
VPS53-210ENST00000571456 SLC51AQ86UW1 340 aa25.52■■□□□ 1.68
VPS53-210ENST00000571456 C1orf115Q9H7X2 142 aa25.52■■□□□ 1.68
VPS53-210ENST00000571456 POLR2AP24928 1970 aaKnown RBP25.51■■□□□ 1.67
VPS53-210ENST00000571456 DUOX1Q9NRD9 1551 aa25.51■■□□□ 1.67
VPS53-210ENST00000571456 PNMA6EA0A0J9YXQ4 647 aa25.5■■□□□ 1.67
VPS53-210ENST00000571456 FAM155AB1AL88 458 aaPredicted RBP25.5■■□□□ 1.67
VPS53-210ENST00000571456 TRPA1O75762 1119 aa25.5■■□□□ 1.67
VPS53-210ENST00000571456 RGMBQ6NW40 437 aa25.5■■□□□ 1.67
VPS53-210ENST00000571456 CTU1Q7Z7A3 348 aaKnown RBP25.5■■□□□ 1.67
VPS53-210ENST00000571456 TBC1D16Q8TBP0 767 aa25.5■■□□□ 1.67
VPS53-210ENST00000571456 CRBNQ96SW2 442 aa25.5■■□□□ 1.67
VPS53-210ENST00000571456 C6orf229H3BNL8 230 aa25.49■■□□□ 1.67
VPS53-210ENST00000571456 HSP90AB4PQ58FF6 505 aa25.49■■□□□ 1.67
VPS53-210ENST00000571456 RNF186Q9NXI6 227 aa25.49■■□□□ 1.67
VPS53-210ENST00000571456 UFL1O94874 794 aa25.48■■□□□ 1.67
VPS53-210ENST00000571456 KCNJ4P48050 445 aa25.48■■□□□ 1.67
VPS53-210ENST00000571456 KIF23Q02241 960 aaPredicted RBP25.48■■□□□ 1.67
VPS53-210ENST00000571456 KIAA2012Q0VF49 1180 aa25.48■■□□□ 1.67
VPS53-210ENST00000571456 UBE4AQ14139 1066 aa25.48■■□□□ 1.67
VPS53-210ENST00000571456 WASHC4Q2M389 1173 aa25.48■■□□□ 1.67
VPS53-210ENST00000571456 USP48Q86UV5 1035 aa25.48■■□□□ 1.67
VPS53-210ENST00000571456 TRPM4Q8TD43 1214 aa25.48■■□□□ 1.67
VPS53-210ENST00000571456 CCDC102AQ96A19 550 aa25.48■■□□□ 1.67
VPS53-210ENST00000571456 NOP58Q9Y2X3 529 aaKnown RBP25.48■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms