RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 CCDC152Q4G0S7 254 aa7.99□□□□□ -1.13
VPS53-209ENST00000570771 CENPQQ7L2Z9 268 aaPredicted RBP7.99□□□□□ -1.13
VPS53-209ENST00000570771 TXNRD3Q86VQ6 643 aa7.99□□□□□ -1.13
VPS53-209ENST00000570771 SSH3Q8TE77 659 aa7.99□□□□□ -1.13
VPS53-209ENST00000570771 RPGRQ92834 1020 aaKnown RBP7.99□□□□□ -1.13
VPS53-209ENST00000570771 CRAMP1Q96RY5 1269 aa7.99□□□□□ -1.13
VPS53-209ENST00000570771 OCEL1Q9H607 264 aa7.99□□□□□ -1.13
VPS53-209ENST00000570771 RIPOR2Q9Y4F9 1068 aa7.99□□□□□ -1.13
VPS53-209ENST00000570771 MYH3P11055 1940 aa7.99□□□□□ -1.13
VPS53-209ENST00000570771 COL1A1P02452 1464 aaPredicted RBP7.99□□□□□ -1.13
VPS53-209ENST00000570771 TAF5LO75529 589 aa7.98□□□□□ -1.13
VPS53-209ENST00000570771 SASH1O94885 1247 aa7.98□□□□□ -1.13
VPS53-209ENST00000570771 ATP8B2P98198 1209 aa7.98□□□□□ -1.13
VPS53-209ENST00000570771 DALRD3Q5D0E6 543 aaKnown RBP7.98□□□□□ -1.13
VPS53-209ENST00000570771 IFNL1Q8IU54 200 aa7.98□□□□□ -1.13
VPS53-209ENST00000570771 TTLL6Q8N841 843 aa7.98□□□□□ -1.13
VPS53-209ENST00000570771 TLR7Q9NYK1 1049 aaKnown RBP7.98□□□□□ -1.13
VPS53-209ENST00000570771 PIM2Q9P1W9 311 aa7.98□□□□□ -1.13
VPS53-209ENST00000570771 ZBTB47Q9UFB7 747 aaPredicted RBP7.98□□□□□ -1.13
VPS53-209ENST00000570771 POLLQ9UGP5 575 aa7.98□□□□□ -1.13
VPS53-209ENST00000570771 MINPP1Q9UNW1 487 aa7.98□□□□□ -1.13
VPS53-209ENST00000570771 EXOC6BQ9Y2D4 811 aa7.98□□□□□ -1.13
VPS53-209ENST00000570771 ATP6V0A2Q9Y487 856 aa7.98□□□□□ -1.13
VPS53-209ENST00000570771 FAM205CA6NFA0 338 aa7.97□□□□□ -1.13
VPS53-209ENST00000570771 ADORA1P30542 326 aa7.97□□□□□ -1.13
VPS53-209ENST00000570771 RPS8P62241 208 aaKnown RBP7.97□□□□□ -1.13
VPS53-209ENST00000570771 CHRNDQ07001 517 aa7.97□□□□□ -1.13
VPS53-209ENST00000570771 HSP90AB4PQ58FF6 505 aa7.97□□□□□ -1.13
VPS53-209ENST00000570771 B4GALNT3Q6L9W6 998 aa7.97□□□□□ -1.13
VPS53-209ENST00000570771 DDX46Q7L014 1031 aaKnown RBP7.97□□□□□ -1.13
VPS53-209ENST00000570771 OTUD7AQ8TE49 926 aaPredicted RBP7.97□□□□□ -1.13
VPS53-209ENST00000570771 GCC1Q96CN9 775 aa7.97□□□□□ -1.13
VPS53-209ENST00000570771 RBM17Q96I25 401 aaKnown RBP7.97□□□□□ -1.13
VPS53-209ENST00000570771 COPRSQ9NQ92 184 aa7.97□□□□□ -1.13
VPS53-209ENST00000570771 ARFGEF1Q9Y6D6 1849 aa7.96□□□□□ -1.13
VPS53-209ENST00000570771 ZNF609O15014 1411 aa7.96□□□□□ -1.13
VPS53-209ENST00000570771 ANKRD18BA2A2Z9 1011 aa7.96□□□□□ -1.14
VPS53-209ENST00000570771 SMARCA5O60264 1052 aaPredicted RBP7.96□□□□□ -1.14
VPS53-209ENST00000570771 TFCP2Q12800 502 aa7.96□□□□□ -1.14
VPS53-209ENST00000570771 IFIT5Q13325 482 aaKnown RBP7.96□□□□□ -1.14
VPS53-209ENST00000570771 ANKRD18AQ8IVF6 992 aa7.96□□□□□ -1.14
VPS53-209ENST00000570771 KCNQ5Q9NR82 932 aa7.96□□□□□ -1.14
VPS53-209ENST00000570771 ZNF277Q9NRM2 450 aaPredicted RBP7.96□□□□□ -1.14
VPS53-209ENST00000570771 BSDC1Q9NW68 430 aaPredicted RBP7.96□□□□□ -1.14
VPS53-209ENST00000570771 ZNF646O15015 1829 aaPredicted RBP7.96□□□□□ -1.14
VPS53-209ENST00000570771 FER1L6Q2WGJ9 1857 aa7.96□□□□□ -1.14
VPS53-209ENST00000570771 YDJCA8MPS7 323 aa7.95□□□□□ -1.14
VPS53-209ENST00000570771 EYA2O00167 538 aa7.95□□□□□ -1.14
VPS53-209ENST00000570771 APBB1O00213 710 aa7.95□□□□□ -1.14
VPS53-209ENST00000570771 FGFR2P21802 821 aa7.95□□□□□ -1.14
VPS53-209ENST00000570771 CCDC57Q2TAC2 916 aa7.95□□□□□ -1.14
VPS53-209ENST00000570771 SP8Q8IXZ3 490 aa7.95□□□□□ -1.14
VPS53-209ENST00000570771 TBC1D16Q8TBP0 767 aa7.95□□□□□ -1.14
VPS53-209ENST00000570771 CNKSR1Q969H4 720 aa7.95□□□□□ -1.14
VPS53-209ENST00000570771 NOP58Q9Y2X3 529 aaKnown RBP7.95□□□□□ -1.14
VPS53-209ENST00000570771 KDM2BQ8NHM5 1336 aa7.95□□□□□ -1.14
VPS53-209ENST00000570771 UFL1O94874 794 aa7.94□□□□□ -1.14
VPS53-209ENST00000570771 GRIK5Q16478 980 aa7.94□□□□□ -1.14
VPS53-209ENST00000570771 AOC3Q16853 763 aa7.94□□□□□ -1.14
VPS53-209ENST00000570771 TSHZ3Q63HK5 1081 aa7.94□□□□□ -1.14
VPS53-209ENST00000570771 LDHAL6AQ6ZMR3 332 aa7.94□□□□□ -1.14
VPS53-209ENST00000570771 RNF166Q96A37 237 aaPredicted RBP7.94□□□□□ -1.14
VPS53-209ENST00000570771 CDC5LQ99459 802 aaKnown RBP7.94□□□□□ -1.14
VPS53-209ENST00000570771 RTFDC1Q9BY42 306 aaPredicted RBP7.94□□□□□ -1.14
VPS53-209ENST00000570771 IL1RAPL2Q9NP60 686 aa7.94□□□□□ -1.14
VPS53-209ENST00000570771 PODXL2Q9NZ53 605 aa7.94□□□□□ -1.14
VPS53-209ENST00000570771 ZNF541Q9H0D2 1346 aa7.94□□□□□ -1.14
VPS53-209ENST00000570771 ARAP2Q8WZ64 1704 aa7.93□□□□□ -1.14
VPS53-209ENST00000570771 SHTN1A0MZ66 631 aa7.93□□□□□ -1.14
VPS53-209ENST00000570771 RAB11FIP3O75154 756 aa7.93□□□□□ -1.14
VPS53-209ENST00000570771 SURF6O75683 361 aaKnown RBP7.93□□□□□ -1.14
VPS53-209ENST00000570771 BBOX1O75936 387 aa7.93□□□□□ -1.14
VPS53-209ENST00000570771 PDE4AP27815 886 aa7.93□□□□□ -1.14
VPS53-209ENST00000570771 ALDH1B1P30837 517 aa7.93□□□□□ -1.14
VPS53-209ENST00000570771 OS9Q13438 667 aaPredicted RBP7.93□□□□□ -1.14
VPS53-209ENST00000570771 SCARF1Q14162 830 aa7.93□□□□□ -1.14
VPS53-209ENST00000570771 GPR162Q16538 588 aa7.93□□□□□ -1.14
VPS53-209ENST00000570771 CCDC93Q567U6 631 aa7.93□□□□□ -1.14
VPS53-209ENST00000570771 PI16Q6UXB8 463 aa7.93□□□□□ -1.14
VPS53-209ENST00000570771 ERC1Q8IUD2 1116 aa7.93□□□□□ -1.14
VPS53-209ENST00000570771 SMC5Q8IY18 1101 aa7.93□□□□□ -1.14
VPS53-209ENST00000570771 C16orf71Q8IYS4 520 aaPredicted RBP7.93□□□□□ -1.14
VPS53-209ENST00000570771 EAF2Q96CJ1 260 aaPredicted RBP7.93□□□□□ -1.14
VPS53-209ENST00000570771 MXD3Q9BW11 206 aa7.93□□□□□ -1.14
VPS53-209ENST00000570771 DCTPP1Q9H773 170 aa7.93□□□□□ -1.14
VPS53-209ENST00000570771 CNNM1Q9NRU3 951 aa7.93□□□□□ -1.14
VPS53-209ENST00000570771 NSFL1CQ9UNZ2 370 aaKnown RBP7.93□□□□□ -1.14
VPS53-209ENST00000570771 JAG2Q9Y219 1238 aa7.93□□□□□ -1.14
VPS53-209ENST00000570771 NDUFB9Q9Y6M9 179 aa7.93□□□□□ -1.14
VPS53-209ENST00000570771 SALL3Q9BXA9 1300 aa7.93□□□□□ -1.14
VPS53-209ENST00000570771 SCN9AQ15858 1988 aa7.93□□□□□ -1.14
VPS53-209ENST00000570771 TIAM2Q8IVF5 1701 aa7.92□□□□□ -1.14
VPS53-209ENST00000570771 RIMBP2O15034 1052 aa7.92□□□□□ -1.14
VPS53-209ENST00000570771 CIAO1O76071 339 aa7.92□□□□□ -1.14
VPS53-209ENST00000570771 IGHMBP2P38935 993 aaKnown RBP7.92□□□□□ -1.14
VPS53-209ENST00000570771 PHKA1P46020 1223 aa7.92□□□□□ -1.14
VPS53-209ENST00000570771 GYG1P46976 350 aa7.92□□□□□ -1.14
VPS53-209ENST00000570771 TIMM10P62072 90 aa7.92□□□□□ -1.14
VPS53-209ENST00000570771 FKBP4Q02790 459 aaKnown RBP eCLIP7.92□□□□□ -1.14
VPS53-209ENST00000570771 G3BP1Q13283 466 aaKnown RBP eCLIP7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms