RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 GTF2E1P29083 439 aaPredicted RBP9.68□□□□□ -0.86
VPS39-213ENST00000570062 TNNI3KQ59H18 835 aa9.68□□□□□ -0.86
VPS39-213ENST00000570062 NUTM1Q86Y26 1132 aa9.68□□□□□ -0.86
VPS39-213ENST00000570062 TTLL11Q8NHH1 800 aa9.68□□□□□ -0.86
VPS39-213ENST00000570062 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.68□□□□□ -0.86
VPS39-213ENST00000570062 CDC5LQ99459 802 aaKnown RBP9.68□□□□□ -0.86
VPS39-213ENST00000570062 PA2G4Q9UQ80 394 aaKnown RBP9.68□□□□□ -0.86
VPS39-213ENST00000570062 FPGT-TNNI3KV9GXZ4 949 aa9.68□□□□□ -0.86
VPS39-213ENST00000570062 GNPATO15228 680 aa9.67□□□□□ -0.86
VPS39-213ENST00000570062 SSFA2P28290 1259 aa9.67□□□□□ -0.86
VPS39-213ENST00000570062 FOSBP53539 338 aa9.67□□□□□ -0.86
VPS39-213ENST00000570062 MFAP1P55081 439 aaKnown RBP9.67□□□□□ -0.86
VPS39-213ENST00000570062 CCDC158Q5M9N0 1113 aa9.67□□□□□ -0.86
VPS39-213ENST00000570062 SUSD4Q5VX71 490 aa9.67□□□□□ -0.86
VPS39-213ENST00000570062 LDHAL6AQ6ZMR3 332 aa9.67□□□□□ -0.86
VPS39-213ENST00000570062 ERICH6Q7L0X2 663 aa9.67□□□□□ -0.86
VPS39-213ENST00000570062 PI4K2BQ8TCG2 481 aa9.67□□□□□ -0.86
VPS39-213ENST00000570062 RILPL2Q969X0 211 aa9.67□□□□□ -0.86
VPS39-213ENST00000570062 SIL1Q9H173 461 aa9.67□□□□□ -0.86
VPS39-213ENST00000570062 ARFGEF2Q9Y6D5 1785 aa9.67□□□□□ -0.86
VPS39-213ENST00000570062 NHSQ6T4R5 1651 aa9.67□□□□□ -0.86
VPS39-213ENST00000570062 RFX7Q2KHR2 1363 aa9.66□□□□□ -0.86
VPS39-213ENST00000570062 TJP1Q07157 1748 aa9.66□□□□□ -0.86
VPS39-213ENST00000570062 ITGA6P23229 1130 aa9.66□□□□□ -0.86
VPS39-213ENST00000570062 PTPREP23469 700 aa9.66□□□□□ -0.86
VPS39-213ENST00000570062 IGHMBP2P38935 993 aaKnown RBP9.66□□□□□ -0.86
VPS39-213ENST00000570062 TFCP2Q12800 502 aa9.66□□□□□ -0.86
VPS39-213ENST00000570062 SF3B3Q15393 1217 aaKnown RBP9.66□□□□□ -0.86
VPS39-213ENST00000570062 KIAA1211Q6ZU35 1233 aa9.66□□□□□ -0.86
VPS39-213ENST00000570062 OTUD7AQ8TE49 926 aaPredicted RBP9.66□□□□□ -0.86
VPS39-213ENST00000570062 EAF2Q96CJ1 260 aaPredicted RBP9.66□□□□□ -0.86
VPS39-213ENST00000570062 MPHOSPH8Q99549 860 aa9.66□□□□□ -0.86
VPS39-213ENST00000570062 SLC4A5Q9BY07 1137 aa9.66□□□□□ -0.86
VPS39-213ENST00000570062 CNNM1Q9NRU3 951 aa9.66□□□□□ -0.86
VPS39-213ENST00000570062 RREB1Q92766 1687 aa9.66□□□□□ -0.86
VPS39-213ENST00000570062 ABCC12Q96J65 1359 aa9.65□□□□□ -0.86
VPS39-213ENST00000570062 RAD50Q92878 1312 aa9.65□□□□□ -0.86
VPS39-213ENST00000570062 IGSF3O75054 1194 aa9.65□□□□□ -0.86
VPS39-213ENST00000570062 NTSR2O95665 410 aa9.65□□□□□ -0.86
VPS39-213ENST00000570062 CHMLP26374 656 aa9.65□□□□□ -0.86
VPS39-213ENST00000570062 PTPN5P54829 565 aa9.65□□□□□ -0.86
VPS39-213ENST00000570062 ANAPC15P60006 121 aa9.65□□□□□ -0.86
VPS39-213ENST00000570062 RTL5Q5HYW3 569 aaPredicted RBP9.65□□□□□ -0.86
VPS39-213ENST00000570062 GORABQ5T7V8 394 aa9.65□□□□□ -0.86
VPS39-213ENST00000570062 ATG9AQ7Z3C6 839 aa9.65□□□□□ -0.86
VPS39-213ENST00000570062 ARHGEF1Q92888 912 aaKnown RBP9.65□□□□□ -0.86
VPS39-213ENST00000570062 ZNF512BQ96KM6 892 aaPredicted RBP9.65□□□□□ -0.86
VPS39-213ENST00000570062 NLRP3Q96P20 1036 aa9.65□□□□□ -0.86
VPS39-213ENST00000570062 LARP6Q9BRS8 491 aaKnown RBP9.65□□□□□ -0.86
VPS39-213ENST00000570062 ANO8Q9HCE9 1232 aaPredicted RBP9.65□□□□□ -0.86
VPS39-213ENST00000570062 DIAPH3Q9NSV4 1193 aa9.65□□□□□ -0.86
VPS39-213ENST00000570062 NUP188Q5SRE5 1749 aa9.65□□□□□ -0.87
VPS39-213ENST00000570062 UBN2Q6ZU65 1347 aa9.64□□□□□ -0.87
VPS39-213ENST00000570062 GTPBP6O43824 516 aaPredicted RBP9.64□□□□□ -0.87
VPS39-213ENST00000570062 EVI5O60447 810 aa9.64□□□□□ -0.87
VPS39-213ENST00000570062 TRIM37O94972 964 aa9.64□□□□□ -0.87
VPS39-213ENST00000570062 UQCRFS1P1P0C7P4 283 aa9.64□□□□□ -0.87
VPS39-213ENST00000570062 METTL24Q5JXM2 366 aa9.64□□□□□ -0.87
VPS39-213ENST00000570062 USPL1Q5W0Q7 1092 aa9.64□□□□□ -0.87
VPS39-213ENST00000570062 JARID2Q92833 1246 aaPredicted RBP9.64□□□□□ -0.87
VPS39-213ENST00000570062 HAUS7Q99871 368 aa9.64□□□□□ -0.87
VPS39-213ENST00000570062 ESYT1Q9BSJ8 1104 aa9.64□□□□□ -0.87
VPS39-213ENST00000570062 USP26Q9BXU7 913 aa9.64□□□□□ -0.87
VPS39-213ENST00000570062 CCDC8Q9H0W5 538 aaPredicted RBP9.64□□□□□ -0.87
VPS39-213ENST00000570062 BCL11AQ9H165 835 aa9.64□□□□□ -0.87
VPS39-213ENST00000570062 RIPOR2Q9Y4F9 1068 aa9.64□□□□□ -0.87
VPS39-213ENST00000570062 NPHP1O15259 732 aa9.63□□□□□ -0.87
VPS39-213ENST00000570062 PDE8BO95263 885 aa9.63□□□□□ -0.87
VPS39-213ENST00000570062 ZFYP08048 801 aaPredicted RBP9.63□□□□□ -0.87
VPS39-213ENST00000570062 MCM2P49736 904 aa9.63□□□□□ -0.87
VPS39-213ENST00000570062 RABEP1Q15276 862 aa9.63□□□□□ -0.87
VPS39-213ENST00000570062 TTF1Q15361 905 aaPredicted RBP9.63□□□□□ -0.87
VPS39-213ENST00000570062 PUM3Q15397 648 aaKnown RBP9.63□□□□□ -0.87
VPS39-213ENST00000570062 TXNRD1Q16881 649 aa9.63□□□□□ -0.87
VPS39-213ENST00000570062 ZSCAN25Q6NSZ9 544 aa9.63□□□□□ -0.87
VPS39-213ENST00000570062 TMED8Q6PL24 325 aaPredicted RBP9.63□□□□□ -0.87
VPS39-213ENST00000570062 NBPF5PQ86XG9 351 aaPredicted RBP9.63□□□□□ -0.87
VPS39-213ENST00000570062 KLHDC4Q8TBB5 520 aa9.63□□□□□ -0.87
VPS39-213ENST00000570062 LPIN2Q92539 896 aa9.63□□□□□ -0.87
VPS39-213ENST00000570062 SNX21Q969T3 373 aa9.63□□□□□ -0.87
VPS39-213ENST00000570062 DDX27Q96GQ7 796 aaKnown RBP9.63□□□□□ -0.87
VPS39-213ENST00000570062 NEUROD6Q96NK8 337 aa9.63□□□□□ -0.87
VPS39-213ENST00000570062 GREM2Q9H772 168 aa9.63□□□□□ -0.87
VPS39-213ENST00000570062 CARMIL3Q8ND23 1372 aa9.63□□□□□ -0.87
VPS39-213ENST00000570062 A0A1B0GUL7 405 aa9.62□□□□□ -0.87
VPS39-213ENST00000570062 BHMG1C9JSJ3 638 aaPredicted RBP9.62□□□□□ -0.87
VPS39-213ENST00000570062 APBA3O96018 575 aa9.62□□□□□ -0.87
VPS39-213ENST00000570062 IFIT1P09914 478 aaKnown RBP9.62□□□□□ -0.87
VPS39-213ENST00000570062 FAM182BQ5T319 152 aa9.62□□□□□ -0.87
VPS39-213ENST00000570062 ANKRD18AQ8IVF6 992 aa9.62□□□□□ -0.87
VPS39-213ENST00000570062 NLGN1Q8N2Q7 840 aa9.62□□□□□ -0.87
VPS39-213ENST00000570062 ZDHHC16Q969W1 377 aa9.62□□□□□ -0.87
VPS39-213ENST00000570062 ANKRD2Q9GZV1 360 aa9.62□□□□□ -0.87
VPS39-213ENST00000570062 DBNLQ9UJU6 430 aaKnown RBP9.62□□□□□ -0.87
VPS39-213ENST00000570062 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.61□□□□□ -0.87
VPS39-213ENST00000570062 GOLGA8CPA6NN73 597 aa9.61□□□□□ -0.87
VPS39-213ENST00000570062 SGSM2O43147 1006 aa9.61□□□□□ -0.87
VPS39-213ENST00000570062 SLC5A1P13866 664 aa9.61□□□□□ -0.87
VPS39-213ENST00000570062 ST5P78524 1137 aa9.61□□□□□ -0.87
VPS39-213ENST00000570062 MAP3K9P80192 1104 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms