RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 UHRF1BP1LA0JNW5 1464 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 ARHGEF12Q9NZN5 1544 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 MIER3Q7Z3K6 550 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 TEX9Q8N6V9 391 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 TSPYL2Q9H2G4 693 aaPredicted RBP7.08□□□□□ -1.28
CLK3-212ENST00000563418 REREQ9P2R6 1566 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 TFIP11Q9UBB9 837 aaKnown RBP7.08□□□□□ -1.28
CLK3-212ENST00000563418 NPC1L1Q9UHC9 1359 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 ASXL1Q8IXJ9 1541 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 SSH2Q76I76 1423 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 CORO7P57737 925 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 CCDC152Q4G0S7 254 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 CCDC178Q5BJE1 867 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 WDR78Q5VTH9 848 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 TAOK1Q7L7X3 1001 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 USP6NLQ92738 828 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 CFAP65Q6ZU64 1925 aaKnown RBP7.08□□□□□ -1.28
CLK3-212ENST00000563418 PAK2Q13177 524 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 SELENOOQ9BVL4 669 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 ANKRD50Q9ULJ7 1429 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 E7EVH7 732 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 TRIM27P14373 513 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 RANBP1P43487 201 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 SAMD1Q6SPF0 538 aaPredicted RBP7.07□□□□□ -1.28
CLK3-212ENST00000563418 RRP36Q96EU6 259 aaKnown RBP7.07□□□□□ -1.28
CLK3-212ENST00000563418 TSKSQ9UJT2 592 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 CASQ2O14958 399 aaPredicted RBP7.07□□□□□ -1.28
CLK3-212ENST00000563418 BRD1O95696 1058 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 CUL3Q13618 768 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 KMT5BQ4FZB7 885 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 C9orf78Q9NZ63 289 aaPredicted RBP7.07□□□□□ -1.28
CLK3-212ENST00000563418 VIRMAQ69YN4 1812 aaKnown RBP7.07□□□□□ -1.28
CLK3-212ENST00000563418 RNF40O75150 1001 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 CTTNBP2NLQ9P2B4 639 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 PUF60Q9UHX1 559 aaKnown RBP7.07□□□□□ -1.28
CLK3-212ENST00000563418 PIK3C2GO75747 1445 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 CLUL1Q15846 466 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 ZNF569Q5MCW4 686 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 SMC1BQ8NDV3 1235 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 GPT2Q8TD30 523 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 FGD5Q6ZNL6 1462 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 TWISTNBQ3B726 338 aaPredicted RBP7.07□□□□□ -1.28
CLK3-212ENST00000563418 CBX8Q9HC52 389 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 KDM5DQ9BY66 1539 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 FAM160A1Q05DH4 1040 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 CCDC102BQ68D86 513 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 Q9H521 79 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 ACBD5Q5T8D3 534 aaPredicted RBP7.07□□□□□ -1.28
CLK3-212ENST00000563418 FERMT3Q86UX7 667 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 UIMC1Q96RL1 719 aa7.07□□□□□ -1.28
CLK3-212ENST00000563418 KIF5AQ12840 1032 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 TDRD7Q8NHU6 1098 aaKnown RBP7.06□□□□□ -1.28
CLK3-212ENST00000563418 CCDC51Q96ER9 411 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 CCDC77Q9BR77 488 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 RASSF10A6NK89 507 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 AKR1B15C9JRZ8 316 aaPredicted RBP7.06□□□□□ -1.28
CLK3-212ENST00000563418 NAA16Q6N069 864 aaPredicted RBP7.06□□□□□ -1.28
CLK3-212ENST00000563418 RNF8O76064 485 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 PSMD2Q13200 908 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 TTC19Q6DKK2 380 aaPredicted RBP7.06□□□□□ -1.28
CLK3-212ENST00000563418 C1orf115Q9H7X2 142 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.06□□□□□ -1.28
CLK3-212ENST00000563418 IFNKQ9P0W0 207 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 SKIP12755 728 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 ICA1Q05084 483 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 AMOTL1Q8IY63 956 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 SLC8A3P57103 927 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 RASIP1Q5U651 963 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 ANKRD27Q96NW4 1050 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 GLRX3O76003 335 aaKnown RBP7.06□□□□□ -1.28
CLK3-212ENST00000563418 TROVE2P10155 538 aaKnown RBP eCLIP7.06□□□□□ -1.28
CLK3-212ENST00000563418 PSMC4P43686 418 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 SFSWAPQ12872 951 aaKnown RBP7.06□□□□□ -1.28
CLK3-212ENST00000563418 PPP1R7Q15435 360 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 RNF216Q9NWF9 866 aaPredicted RBP7.06□□□□□ -1.28
CLK3-212ENST00000563418 FAM169AQ9Y6X4 670 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 SNUPNO95149 360 aaKnown RBP7.06□□□□□ -1.28
CLK3-212ENST00000563418 MYL5Q02045 173 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 DNM1Q05193 864 aaKnown RBP7.06□□□□□ -1.28
CLK3-212ENST00000563418 SWT1Q5T5J6 900 aaKnown RBP7.06□□□□□ -1.28
CLK3-212ENST00000563418 RUBCNQ92622 972 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 UBA5Q9GZZ9 404 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 TRIM35Q9UPQ4 493 aa7.06□□□□□ -1.28
CLK3-212ENST00000563418 FRMD3A2A2Y4 597 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 ZNF131P52739 623 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 FOSBP53539 338 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 PPP1R13BQ96KQ4 1090 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 USP26Q9BXU7 913 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 BICC1Q9H694 974 aaKnown RBP7.05□□□□□ -1.28
CLK3-212ENST00000563418 PYCARDQ9ULZ3 195 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 SGSM2O43147 1006 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 RCSD1Q6JBY9 416 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 SRGAP1Q7Z6B7 1085 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 ZBTB9Q96C00 473 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 RMND1Q9NWS8 449 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 NSD2O96028 1365 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 NUTM2DQ5VT03 806 aaPredicted RBP7.05□□□□□ -1.28
CLK3-212ENST00000563418 C8orf74Q6P047 294 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 CYP26C1Q6V0L0 522 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 NUTM2AQ8IVF1 878 aaPredicted RBP7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms