RNA–Protein interactions for RNA: ENST00000561749.1

SMPD3-202, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-202ENST00000561749 ATP8B2P98198 1209 aa29.1■■■□□ 2.25
SMPD3-202ENST00000561749 ZNF646O15015 1829 aaPredicted RBP29.09■■■□□ 2.25
SMPD3-202ENST00000561749 CIAO1O76071 339 aa29.09■■■□□ 2.25
SMPD3-202ENST00000561749 PDE8BO95263 885 aa29.09■■■□□ 2.25
SMPD3-202ENST00000561749 UBE4AQ14139 1066 aa29.09■■■□□ 2.25
SMPD3-202ENST00000561749 TNIP1Q15025 636 aa29.09■■■□□ 2.25
SMPD3-202ENST00000561749 COA1Q9GZY4 146 aa29.08■■■□□ 2.25
SMPD3-202ENST00000561749 GMPSP49915 693 aaPredicted RBP29.07■■■□□ 2.24
SMPD3-202ENST00000561749 CEP85Q6P2H3 762 aa29.07■■■□□ 2.24
SMPD3-202ENST00000561749 C15orf52Q6ZUT6 534 aaKnown RBP29.07■■■□□ 2.24
SMPD3-202ENST00000561749 C16orf71Q8IYS4 520 aaPredicted RBP29.07■■■□□ 2.24
SMPD3-202ENST00000561749 FBXW7Q969H0 707 aa29.07■■■□□ 2.24
SMPD3-202ENST00000561749 ZBTB40Q9NUA8 1239 aa29.07■■■□□ 2.24
SMPD3-202ENST00000561749 FBXO3Q9UK99 471 aa29.07■■■□□ 2.24
SMPD3-202ENST00000561749 ZBTB12Q9Y330 459 aaPredicted RBP29.07■■■□□ 2.24
SMPD3-202ENST00000561749 IL15P40933 162 aaPredicted RBP29.06■■■□□ 2.24
SMPD3-202ENST00000561749 SCNN1DP51172 638 aa29.06■■■□□ 2.24
SMPD3-202ENST00000561749 POLA2Q14181 598 aa29.06■■■□□ 2.24
SMPD3-202ENST00000561749 PODNQ7Z5L7 613 aa29.06■■■□□ 2.24
SMPD3-202ENST00000561749 HACL1Q9UJ83 578 aa29.06■■■□□ 2.24
SMPD3-202ENST00000561749 IQCA1LA6NCM1 817 aa29.05■■■□□ 2.24
SMPD3-202ENST00000561749 GYG1P46976 350 aa29.05■■■□□ 2.24
SMPD3-202ENST00000561749 SSH3Q8TE77 659 aa29.05■■■□□ 2.24
SMPD3-202ENST00000561749 CEP126Q9P2H0 1117 aa29.05■■■□□ 2.24
SMPD3-202ENST00000561749 LMOD1P29536 600 aaPredicted RBP29.04■■■□□ 2.24
SMPD3-202ENST00000561749 EPS15P42566 896 aa29.04■■■□□ 2.24
SMPD3-202ENST00000561749 ZNF804AQ7Z570 1209 aa29.04■■■□□ 2.24
SMPD3-202ENST00000561749 CD209Q9NNX6 404 aa29.04■■■□□ 2.24
SMPD3-202ENST00000561749 PUM3Q15397 648 aaKnown RBP29.03■■■□□ 2.24
SMPD3-202ENST00000561749 TAF1DQ9H5J8 278 aaPredicted RBP29.03■■■□□ 2.24
SMPD3-202ENST00000561749 SHTN1A0MZ66 631 aa29.02■■■□□ 2.24
SMPD3-202ENST00000561749 USP17L3A6NCW0 530 aa29.02■■■□□ 2.24
SMPD3-202ENST00000561749 USP17L4A6NCW7 530 aa29.02■■■□□ 2.24
SMPD3-202ENST00000561749 FGFR2P21802 821 aa29.02■■■□□ 2.24
SMPD3-202ENST00000561749 EPHX2P34913 555 aa29.02■■■□□ 2.24
SMPD3-202ENST00000561749 USP17L1Q7RTZ2 530 aa29.02■■■□□ 2.24
SMPD3-202ENST00000561749 CHMP4BQ9H444 224 aaKnown RBP29.02■■■□□ 2.24
SMPD3-202ENST00000561749 MYH13Q9UKX3 1938 aa29.01■■■□□ 2.23
SMPD3-202ENST00000561749 VIL1P09327 827 aaKnown RBP29.01■■■□□ 2.23
SMPD3-202ENST00000561749 TFCP2Q12800 502 aa29.01■■■□□ 2.23
SMPD3-202ENST00000561749 G3BP1Q13283 466 aaKnown RBP eCLIP29.01■■■□□ 2.23
SMPD3-202ENST00000561749 FAM84BQ96KN1 310 aaPredicted RBP29.01■■■□□ 2.23
SMPD3-202ENST00000561749 MXD3Q9BW11 206 aa29.01■■■□□ 2.23
SMPD3-202ENST00000561749 GPRC5DQ9NZD1 345 aa29.01■■■□□ 2.23
SMPD3-202ENST00000561749 ARAP2Q8WZ64 1704 aa29■■■□□ 2.23
SMPD3-202ENST00000561749 IFIT1P09914 478 aaKnown RBP29■■■□□ 2.23
SMPD3-202ENST00000561749 POTEIP0CG38 1075 aa29■■■□□ 2.23
SMPD3-202ENST00000561749 POTEJP0CG39 1038 aa29■■■□□ 2.23
SMPD3-202ENST00000561749 ATP2B3Q16720 1220 aa29■■■□□ 2.23
SMPD3-202ENST00000561749 EAPPQ56P03 285 aaPredicted RBP29■■■□□ 2.23
SMPD3-202ENST00000561749 SURF6O75683 361 aaKnown RBP28.99■■■□□ 2.23
SMPD3-202ENST00000561749 TOMM70O94826 608 aa28.99■■■□□ 2.23
SMPD3-202ENST00000561749 SLC5A1P13866 664 aa28.99■■■□□ 2.23
SMPD3-202ENST00000561749 HIBADHP31937 336 aaKnown RBP28.99■■■□□ 2.23
SMPD3-202ENST00000561749 GTF2IP78347 998 aa28.99■■■□□ 2.23
SMPD3-202ENST00000561749 JAG2Q9Y219 1238 aa28.99■■■□□ 2.23
SMPD3-202ENST00000561749 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP28.99■■■□□ 2.23
SMPD3-202ENST00000561749 OS9Q13438 667 aaPredicted RBP28.98■■■□□ 2.23
SMPD3-202ENST00000561749 RSBN1LQ6PCB5 846 aaPredicted RBP28.98■■■□□ 2.23
SMPD3-202ENST00000561749 LPIN2Q92539 896 aa28.98■■■□□ 2.23
SMPD3-202ENST00000561749 CRBNQ96SW2 442 aa28.98■■■□□ 2.23
SMPD3-202ENST00000561749 CNOT7Q9UIV1 285 aaKnown RBP28.98■■■□□ 2.23
SMPD3-202ENST00000561749 IQSEC3Q9UPP2 1182 aaPredicted RBP28.98■■■□□ 2.23
SMPD3-202ENST00000561749 IL1R1P14778 569 aa28.97■■■□□ 2.23
SMPD3-202ENST00000561749 DACT2Q5SW24 774 aa28.97■■■□□ 2.23
SMPD3-202ENST00000561749 TTLL5Q6EMB2 1281 aa28.97■■■□□ 2.23
SMPD3-202ENST00000561749 VPS37DQ86XT2 251 aa28.97■■■□□ 2.23
SMPD3-202ENST00000561749 MICALL2Q8IY33 904 aa28.97■■■□□ 2.23
SMPD3-202ENST00000561749 BCAMP50895 628 aa28.96■■■□□ 2.23
SMPD3-202ENST00000561749 CAVIN4Q5BKX8 364 aa28.96■■■□□ 2.23
SMPD3-202ENST00000561749 FBXO33Q7Z6M2 555 aa28.96■■■□□ 2.23
SMPD3-202ENST00000561749 SUPT16HQ9Y5B9 1047 aaKnown RBP28.96■■■□□ 2.23
SMPD3-202ENST00000561749 ADAMTSL1Q8N6G6 1762 aa28.96■■■□□ 2.23
SMPD3-202ENST00000561749 SASH1O94885 1247 aa28.95■■■□□ 2.22
SMPD3-202ENST00000561749 RPS12P25398 132 aaKnown RBP28.95■■■□□ 2.22
SMPD3-202ENST00000561749 C1QTNF8P60827 252 aa28.95■■■□□ 2.22
SMPD3-202ENST00000561749 STRIP1Q5VSL9 837 aa28.95■■■□□ 2.22
SMPD3-202ENST00000561749 SIRT2Q8IXJ6 389 aa28.95■■■□□ 2.22
SMPD3-202ENST00000561749 RPAP2Q8IXW5 612 aaPredicted RBP28.95■■■□□ 2.22
SMPD3-202ENST00000561749 RBM46Q8TBY0 533 aaKnown RBP28.95■■■□□ 2.22
SMPD3-202ENST00000561749 ADORA1P30542 326 aa28.94■■■□□ 2.22
SMPD3-202ENST00000561749 TDRD7Q8NHU6 1098 aaKnown RBP28.94■■■□□ 2.22
SMPD3-202ENST00000561749 DPF2Q92785 391 aa28.94■■■□□ 2.22
SMPD3-202ENST00000561749 EXOC6BQ9Y2D4 811 aa28.94■■■□□ 2.22
SMPD3-202ENST00000561749 TIMM10P62072 90 aa28.93■■■□□ 2.22
SMPD3-202ENST00000561749 AGBL3Q8NEM8 1001 aa28.93■■■□□ 2.22
SMPD3-202ENST00000561749 ADARB2Q9NS39 739 aaKnown RBP28.93■■■□□ 2.22
SMPD3-202ENST00000561749 CLEC11AQ9Y240 323 aa28.93■■■□□ 2.22
SMPD3-202ENST00000561749 NOP58Q9Y2X3 529 aaKnown RBP28.93■■■□□ 2.22
SMPD3-202ENST00000561749 H7C1D1 291 aa28.92■■■□□ 2.22
SMPD3-202ENST00000561749 PNMA8AQ86V59 439 aaPredicted RBP28.92■■■□□ 2.22
SMPD3-202ENST00000561749 TRPM4Q8TD43 1214 aa28.92■■■□□ 2.22
SMPD3-202ENST00000561749 GMLQ99445 158 aa28.92■■■□□ 2.22
SMPD3-202ENST00000561749 ZNF609O15014 1411 aa28.92■■■□□ 2.22
SMPD3-202ENST00000561749 A0A1B0GUL7 405 aa28.91■■■□□ 2.22
SMPD3-202ENST00000561749 RBM26Q5T8P6 1007 aaKnown RBP28.91■■■□□ 2.22
SMPD3-202ENST00000561749 SAMD7Q7Z3H4 446 aa28.91■■■□□ 2.22
SMPD3-202ENST00000561749 AKAP2Q9Y2D5 859 aa28.91■■■□□ 2.22
SMPD3-202ENST00000561749 HMMRO75330 724 aa28.9■■■□□ 2.22
SMPD3-202ENST00000561749 FRAT2O75474 233 aaPredicted RBP28.9■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms