RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 RASAL3Q86YV0 1011 aa24.34■■□□□ 1.49
VPS35-202ENST00000561713 MYOZ2Q9NPC6 264 aa24.34■■□□□ 1.49
VPS35-202ENST00000561713 SCAF8Q9UPN6 1271 aaKnown RBP24.34■■□□□ 1.49
VPS35-202ENST00000561713 XDHP47989 1333 aa24.34■■□□□ 1.49
VPS35-202ENST00000561713 AKAP11Q9UKA4 1901 aa24.33■■□□□ 1.49
VPS35-202ENST00000561713 NEURL1BA8MQ27 555 aa24.33■■□□□ 1.49
VPS35-202ENST00000561713 SLC4A2P04920 1241 aa24.33■■□□□ 1.49
VPS35-202ENST00000561713 ANKRD18AQ8IVF6 992 aa24.33■■□□□ 1.49
VPS35-202ENST00000561713 NEXNQ0ZGT2 675 aa24.32■■□□□ 1.48
VPS35-202ENST00000561713 FLIIQ13045 1269 aa24.32■■□□□ 1.48
VPS35-202ENST00000561713 UBE3BQ7Z3V4 1068 aa24.32■■□□□ 1.48
VPS35-202ENST00000561713 CHMP4AQ9BY43 222 aa24.32■■□□□ 1.48
VPS35-202ENST00000561713 USP17L3A6NCW0 530 aa24.31■■□□□ 1.48
VPS35-202ENST00000561713 USP17L4A6NCW7 530 aa24.31■■□□□ 1.48
VPS35-202ENST00000561713 ATP2B4P23634 1241 aa24.31■■□□□ 1.48
VPS35-202ENST00000561713 SOX10P56693 466 aa24.31■■□□□ 1.48
VPS35-202ENST00000561713 EXOSC9Q06265 439 aaKnown RBP24.31■■□□□ 1.48
VPS35-202ENST00000561713 MOB2Q70IA6 237 aa24.31■■□□□ 1.48
VPS35-202ENST00000561713 USP17L1Q7RTZ2 530 aa24.31■■□□□ 1.48
VPS35-202ENST00000561713 FAM9BQ8IZU0 186 aa24.31■■□□□ 1.48
VPS35-202ENST00000561713 GREM2Q9H772 168 aa24.31■■□□□ 1.48
VPS35-202ENST00000561713 SPINK5Q9NQ38 1064 aaPredicted RBP24.31■■□□□ 1.48
VPS35-202ENST00000561713 FKBP1BP68106 108 aa24.3■■□□□ 1.48
VPS35-202ENST00000561713 PODNQ7Z5L7 613 aa24.3■■□□□ 1.48
VPS35-202ENST00000561713 PITPNM2Q9BZ72 1349 aa24.3■■□□□ 1.48
VPS35-202ENST00000561713 FKBP5Q13451 457 aaPredicted RBP24.29■■□□□ 1.48
VPS35-202ENST00000561713 PRAMEF18Q5VWM3 479 aa24.29■■□□□ 1.48
VPS35-202ENST00000561713 PAPPA2Q9BXP8 1791 aa24.29■■□□□ 1.48
VPS35-202ENST00000561713 NBPF9Q3BBW0 867 aa24.28■■□□□ 1.48
VPS35-202ENST00000561713 CTU1Q7Z7A3 348 aaKnown RBP24.28■■□□□ 1.48
VPS35-202ENST00000561713 REM2Q8IYK8 340 aaPredicted RBP24.28■■□□□ 1.48
VPS35-202ENST00000561713 TTLL11Q8NHH1 800 aa24.28■■□□□ 1.48
VPS35-202ENST00000561713 MXD3Q9BW11 206 aa24.28■■□□□ 1.48
VPS35-202ENST00000561713 UBE2Q2LH0YL09 131 aa24.27■■□□□ 1.48
VPS35-202ENST00000561713 CDC5LQ99459 802 aaKnown RBP24.27■■□□□ 1.48
VPS35-202ENST00000561713 MINPP1Q9UNW1 487 aa24.27■■□□□ 1.48
VPS35-202ENST00000561713 VAMP4O75379 141 aa24.26■■□□□ 1.47
VPS35-202ENST00000561713 GCKRQ14397 625 aa24.25■■□□□ 1.47
VPS35-202ENST00000561713 NCBP3Q53F19 620 aaKnown RBP24.25■■□□□ 1.47
VPS35-202ENST00000561713 DACT2Q5SW24 774 aa24.25■■□□□ 1.47
VPS35-202ENST00000561713 WDR63Q8IWG1 891 aa24.25■■□□□ 1.47
VPS35-202ENST00000561713 DNAAF4Q8WXU2 420 aa24.25■■□□□ 1.47
VPS35-202ENST00000561713 BSDC1Q9NW68 430 aaPredicted RBP24.25■■□□□ 1.47
VPS35-202ENST00000561713 MED23Q9ULK4 1368 aa24.25■■□□□ 1.47
VPS35-202ENST00000561713 F6X3S4 739 aa24.24■■□□□ 1.47
VPS35-202ENST00000561713 H7C1W4 665 aa24.24■■□□□ 1.47
VPS35-202ENST00000561713 FBXW7Q969H0 707 aa24.24■■□□□ 1.47
VPS35-202ENST00000561713 TBC1D8O95759 1140 aa24.23■■□□□ 1.47
VPS35-202ENST00000561713 CCT4P50991 539 aaKnown RBP24.23■■□□□ 1.47
VPS35-202ENST00000561713 PDE4DIPQ5VU43 2346 aa24.23■■□□□ 1.47
VPS35-202ENST00000561713 WNT10BO00744 389 aa24.22■■□□□ 1.47
VPS35-202ENST00000561713 CASP7P55210 303 aa24.22■■□□□ 1.47
VPS35-202ENST00000561713 TTLL12Q14166 644 aaPredicted RBP24.22■■□□□ 1.47
VPS35-202ENST00000561713 TXNRD3Q86VQ6 643 aa24.22■■□□□ 1.47
VPS35-202ENST00000561713 OGFOD1Q8N543 542 aa24.21■■□□□ 1.47
VPS35-202ENST00000561713 HPS5Q9UPZ3 1129 aa24.21■■□□□ 1.47
VPS35-202ENST00000561713 STRIP1Q5VSL9 837 aa24.2■■□□□ 1.46
VPS35-202ENST00000561713 LINS1Q8NG48 757 aa24.2■■□□□ 1.46
VPS35-202ENST00000561713 ZNF296Q8WUU4 475 aaPredicted RBP24.2■■□□□ 1.46
VPS35-202ENST00000561713 MYH16Q9H6N6 1097 aa24.2■■□□□ 1.46
VPS35-202ENST00000561713 SASH1O94885 1247 aa24.19■■□□□ 1.46
VPS35-202ENST00000561713 ITGA6P23229 1130 aa24.19■■□□□ 1.46
VPS35-202ENST00000561713 KLRK1P26718 216 aa24.19■■□□□ 1.46
VPS35-202ENST00000561713 MKRN3Q13064 507 aaKnown RBP24.19■■□□□ 1.46
VPS35-202ENST00000561713 COA1Q9GZY4 146 aa24.19■■□□□ 1.46
VPS35-202ENST00000561713 HDAC9Q9UKV0 1011 aa24.19■■□□□ 1.46
VPS35-202ENST00000561713 MYO3BQ8WXR4 1341 aa24.18■■□□□ 1.46
VPS35-202ENST00000561713 TM4SF4P48230 202 aa24.18■■□□□ 1.46
VPS35-202ENST00000561713 PLA2G12BQ9BX93 195 aa24.18■■□□□ 1.46
VPS35-202ENST00000561713 IGHMBP2P38935 993 aaKnown RBP24.17■■□□□ 1.46
VPS35-202ENST00000561713 NF2P35240 595 aa24.16■■□□□ 1.46
VPS35-202ENST00000561713 PRKG1Q13976 671 aa24.16■■□□□ 1.46
VPS35-202ENST00000561713 PKN2Q16513 984 aaKnown RBP24.16■■□□□ 1.46
VPS35-202ENST00000561713 TTLL5Q6EMB2 1281 aa24.16■■□□□ 1.46
VPS35-202ENST00000561713 LEMD3Q9Y2U8 911 aa24.16■■□□□ 1.46
VPS35-202ENST00000561713 PTPN12Q05209 780 aaKnown RBP24.15■■□□□ 1.46
VPS35-202ENST00000561713 KIAA0825Q8IV33 1275 aa24.15■■□□□ 1.46
VPS35-202ENST00000561713 CHMP3Q9Y3E7 222 aa24.15■■□□□ 1.46
VPS35-202ENST00000561713 ZNF804BA4D1E1 1349 aa24.14■■□□□ 1.46
VPS35-202ENST00000561713 GPR25O00155 361 aa24.14■■□□□ 1.45
VPS35-202ENST00000561713 BEND3Q5T5X7 828 aa24.14■■□□□ 1.45
VPS35-202ENST00000561713 ZNF521Q96K83 1311 aa24.13■■□□□ 1.45
VPS35-202ENST00000561713 GTF2IP78347 998 aa24.13■■□□□ 1.45
VPS35-202ENST00000561713 MPHOSPH8Q99549 860 aa24.13■■□□□ 1.45
VPS35-202ENST00000561713 R3HDMLQ9H3Y0 253 aa24.13■■□□□ 1.45
VPS35-202ENST00000561713 SNAP23O00161 211 aa24.12■■□□□ 1.45
VPS35-202ENST00000561713 CSF1RP07333 972 aa24.12■■□□□ 1.45
VPS35-202ENST00000561713 MMP14P50281 582 aa24.12■■□□□ 1.45
VPS35-202ENST00000561713 EPHA10Q5JZY3 1008 aa24.12■■□□□ 1.45
VPS35-202ENST00000561713 ARMC9Q7Z3E5 817 aa24.12■■□□□ 1.45
VPS35-202ENST00000561713 ZBED3Q96IU2 234 aaPredicted RBP24.12■■□□□ 1.45
VPS35-202ENST00000561713 ANKRD2Q9GZV1 360 aa24.12■■□□□ 1.45
VPS35-202ENST00000561713 FZD1Q9UP38 647 aa24.12■■□□□ 1.45
VPS35-202ENST00000561713 FOXO4P98177 505 aa24.11■■□□□ 1.45
VPS35-202ENST00000561713 CHRNDQ07001 517 aa24.11■■□□□ 1.45
VPS35-202ENST00000561713 SREBF2Q12772 1141 aa24.11■■□□□ 1.45
VPS35-202ENST00000561713 APOBEC3FQ8IUX4 373 aaKnown RBP24.11■■□□□ 1.45
VPS35-202ENST00000561713 PCDH10Q9P2E7 1040 aa24.11■■□□□ 1.45
VPS35-202ENST00000561713 ECM29Q5VYK3 1845 aa24.1■■□□□ 1.45
VPS35-202ENST00000561713 HTTP42858 3142 aa24.1■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms