RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 ZNF804BA4D1E1 1349 aa12.98□□□□□ -0.33
LDLR-214ENST00000560628 ZNF521Q96K83 1311 aa12.98□□□□□ -0.33
LDLR-214ENST00000560628 SNAP23O00161 211 aa12.98□□□□□ -0.33
LDLR-214ENST00000560628 USP17L8P0C7I0 530 aa12.98□□□□□ -0.33
LDLR-214ENST00000560628 ZNF280AP59817 542 aaPredicted RBP12.98□□□□□ -0.33
LDLR-214ENST00000560628 CHRNDQ07001 517 aa12.98□□□□□ -0.33
LDLR-214ENST00000560628 IFIT5Q13325 482 aaKnown RBP12.98□□□□□ -0.33
LDLR-214ENST00000560628 SCARF1Q14162 830 aa12.98□□□□□ -0.33
LDLR-214ENST00000560628 EPHA10Q5JZY3 1008 aa12.98□□□□□ -0.33
LDLR-214ENST00000560628 LMBR1LQ6UX01 489 aa12.98□□□□□ -0.33
LDLR-214ENST00000560628 GGA3Q9NZ52 723 aa12.98□□□□□ -0.33
LDLR-214ENST00000560628 C9orf78Q9NZ63 289 aaPredicted RBP12.98□□□□□ -0.33
LDLR-214ENST00000560628 SCN9AQ15858 1988 aa12.98□□□□□ -0.33
LDLR-214ENST00000560628 MED23Q9ULK4 1368 aa12.97□□□□□ -0.33
LDLR-214ENST00000560628 GRM8O00222 908 aa12.97□□□□□ -0.33
LDLR-214ENST00000560628 TAF5LO75529 589 aa12.97□□□□□ -0.33
LDLR-214ENST00000560628 HSPA8P11142 646 aaKnown RBP12.97□□□□□ -0.33
LDLR-214ENST00000560628 KCNJ4P48050 445 aa12.97□□□□□ -0.33
LDLR-214ENST00000560628 HUNKP57058 714 aa12.97□□□□□ -0.33
LDLR-214ENST00000560628 ANGEL2Q5VTE6 544 aaKnown RBP12.97□□□□□ -0.33
LDLR-214ENST00000560628 SULF1Q8IWU6 871 aa12.97□□□□□ -0.33
LDLR-214ENST00000560628 ZNF594Q96JF6 807 aaPredicted RBP12.97□□□□□ -0.33
LDLR-214ENST00000560628 COA1Q9GZY4 146 aa12.97□□□□□ -0.33
LDLR-214ENST00000560628 PRDM10Q9NQV6 1147 aa12.97□□□□□ -0.33
LDLR-214ENST00000560628 SCAF8Q9UPN6 1271 aaKnown RBP12.97□□□□□ -0.33
LDLR-214ENST00000560628 TRPM7Q96QT4 1865 aa12.97□□□□□ -0.33
LDLR-214ENST00000560628 PLIN1O60240 522 aa12.96□□□□□ -0.33
LDLR-214ENST00000560628 MAP2K2P36507 400 aa12.96□□□□□ -0.33
LDLR-214ENST00000560628 DACT2Q5SW24 774 aa12.96□□□□□ -0.33
LDLR-214ENST00000560628 TTLL5Q6EMB2 1281 aa12.96□□□□□ -0.33
LDLR-214ENST00000560628 C2orf69Q8N8R5 385 aa12.96□□□□□ -0.33
LDLR-214ENST00000560628 BEGAINQ9BUH8 593 aa12.96□□□□□ -0.33
LDLR-214ENST00000560628 SRCIN1Q9C0H9 1055 aa12.96□□□□□ -0.33
LDLR-214ENST00000560628 MYOZ2Q9NPC6 264 aa12.96□□□□□ -0.33
LDLR-214ENST00000560628 POLR2AP24928 1970 aaKnown RBP12.95□□□□□ -0.34
LDLR-214ENST00000560628 ALDH1L1O75891 902 aa12.95□□□□□ -0.34
LDLR-214ENST00000560628 GTF2IP78347 998 aa12.95□□□□□ -0.34
LDLR-214ENST00000560628 CCDC57Q2TAC2 916 aa12.95□□□□□ -0.34
LDLR-214ENST00000560628 TAF7LQ5H9L4 462 aa12.95□□□□□ -0.34
LDLR-214ENST00000560628 STRIP1Q5VSL9 837 aa12.95□□□□□ -0.34
LDLR-214ENST00000560628 MRPL50Q8N5N7 158 aaKnown RBP12.95□□□□□ -0.34
LDLR-214ENST00000560628 HHIPL1Q96JK4 782 aa12.95□□□□□ -0.34
LDLR-214ENST00000560628 ZIC5Q96T25 663 aa12.95□□□□□ -0.34
LDLR-214ENST00000560628 GBA2Q9HCG7 927 aaPredicted RBP12.95□□□□□ -0.34
LDLR-214ENST00000560628 TSKSQ9UJT2 592 aa12.95□□□□□ -0.34
LDLR-214ENST00000560628 MYH3P11055 1940 aa12.94□□□□□ -0.34
LDLR-214ENST00000560628 E9PSI1 815 aa12.94□□□□□ -0.34
LDLR-214ENST00000560628 NBPF9Q3BBW0 867 aa12.94□□□□□ -0.34
LDLR-214ENST00000560628 LDHAL6AQ6ZMR3 332 aa12.94□□□□□ -0.34
LDLR-214ENST00000560628 OGFOD1Q8N543 542 aa12.94□□□□□ -0.34
LDLR-214ENST00000560628 CDCA5Q96FF9 252 aa12.94□□□□□ -0.34
LDLR-214ENST00000560628 CDCA7LQ96GN5 454 aa12.94□□□□□ -0.34
LDLR-214ENST00000560628 CD209Q9NNX6 404 aa12.94□□□□□ -0.34
LDLR-214ENST00000560628 CACNA1FO60840 1977 aa12.94□□□□□ -0.34
LDLR-214ENST00000560628 SPEF2Q9C093 1822 aa12.93□□□□□ -0.34
LDLR-214ENST00000560628 NBPF7P0C2Y1 421 aaPredicted RBP12.93□□□□□ -0.34
LDLR-214ENST00000560628 SLFN5Q08AF3 891 aa12.93□□□□□ -0.34
LDLR-214ENST00000560628 PRAMEF18Q5VWM3 479 aa12.93□□□□□ -0.34
LDLR-214ENST00000560628 RGMBQ6NW40 437 aa12.93□□□□□ -0.34
LDLR-214ENST00000560628 KIAA0825Q8IV33 1275 aa12.93□□□□□ -0.34
LDLR-214ENST00000560628 SSH1Q8WYL5 1049 aa12.93□□□□□ -0.34
LDLR-214ENST00000560628 SUCLG2Q96I99 432 aa12.93□□□□□ -0.34
LDLR-214ENST00000560628 CNNM1Q9NRU3 951 aa12.93□□□□□ -0.34
LDLR-214ENST00000560628 ZNF157P51786 506 aaPredicted RBP12.92□□□□□ -0.34
LDLR-214ENST00000560628 KAZALD1Q96I82 304 aa12.92□□□□□ -0.34
LDLR-214ENST00000560628 ZNF609O15014 1411 aa12.91□□□□□ -0.34
LDLR-214ENST00000560628 WNT10BO00744 389 aa12.91□□□□□ -0.34
LDLR-214ENST00000560628 SASH1O94885 1247 aa12.91□□□□□ -0.34
LDLR-214ENST00000560628 NOGQ13253 232 aa12.91□□□□□ -0.34
LDLR-214ENST00000560628 MOB2Q70IA6 237 aa12.91□□□□□ -0.34
LDLR-214ENST00000560628 PUS3Q9BZE2 481 aaKnown RBP12.91□□□□□ -0.34
LDLR-214ENST00000560628 JAG2Q9Y219 1238 aa12.91□□□□□ -0.34
LDLR-214ENST00000560628 MYO3BQ8WXR4 1341 aa12.9□□□□□ -0.34
LDLR-214ENST00000560628 IRS2Q9Y4H2 1338 aa12.9□□□□□ -0.34
LDLR-214ENST00000560628 FAM155AB1AL88 458 aaPredicted RBP12.9□□□□□ -0.34
LDLR-214ENST00000560628 BRPF1P55201 1214 aaPredicted RBP12.9□□□□□ -0.34
LDLR-214ENST00000560628 KIF23Q02241 960 aaPredicted RBP12.9□□□□□ -0.34
LDLR-214ENST00000560628 C15orf52Q6ZUT6 534 aaKnown RBP12.9□□□□□ -0.34
LDLR-214ENST00000560628 CERS5Q8N5B7 392 aa12.9□□□□□ -0.34
LDLR-214ENST00000560628 CCDC102AQ96A19 550 aa12.9□□□□□ -0.34
LDLR-214ENST00000560628 BICC1Q9H694 974 aaKnown RBP12.9□□□□□ -0.34
LDLR-214ENST00000560628 HDAC9Q9UKV0 1011 aa12.9□□□□□ -0.34
LDLR-214ENST00000560628 PITPNM2Q9BZ72 1349 aa12.89□□□□□ -0.35
LDLR-214ENST00000560628 F8W031 263 aaPredicted RBP12.89□□□□□ -0.35
LDLR-214ENST00000560628 UBE2Q2LH0YL09 131 aa12.89□□□□□ -0.35
LDLR-214ENST00000560628 ZNF804AQ7Z570 1209 aa12.89□□□□□ -0.35
LDLR-214ENST00000560628 UTYO14607 1347 aa12.88□□□□□ -0.35
LDLR-214ENST00000560628 PTPRCP08575 1304 aa12.88□□□□□ -0.35
LDLR-214ENST00000560628 IL1R1P14778 569 aa12.88□□□□□ -0.35
LDLR-214ENST00000560628 TTLL12Q14166 644 aaPredicted RBP12.88□□□□□ -0.35
LDLR-214ENST00000560628 DLGAP5Q15398 846 aa12.88□□□□□ -0.35
LDLR-214ENST00000560628 ANKRD44Q8N8A2 993 aa12.88□□□□□ -0.35
LDLR-214ENST00000560628 SMC4Q9NTJ3 1288 aa12.88□□□□□ -0.35
LDLR-214ENST00000560628 RIPOR2Q9Y4F9 1068 aa12.88□□□□□ -0.35
LDLR-214ENST00000560628 PCDHAC2Q9Y5I4 1007 aa12.88□□□□□ -0.35
LDLR-214ENST00000560628 CA12O43570 354 aa12.87□□□□□ -0.35
LDLR-214ENST00000560628 GYG1P46976 350 aa12.87□□□□□ -0.35
LDLR-214ENST00000560628 MMP14P50281 582 aa12.87□□□□□ -0.35
LDLR-214ENST00000560628 PRKG1Q13976 671 aa12.87□□□□□ -0.35
LDLR-214ENST00000560628 LRRC24Q50LG9 513 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms