RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 ATP5J2-PTCD1G3V325 749 aa12.18□□□□□ -0.46
SYNE2-224ENST00000557024 RIOK3O14730 519 aaKnown RBP12.18□□□□□ -0.46
SYNE2-224ENST00000557024 USP17L8P0C7I0 530 aa12.18□□□□□ -0.46
SYNE2-224ENST00000557024 RPS8P62241 208 aaKnown RBP12.18□□□□□ -0.46
SYNE2-224ENST00000557024 SREBF2Q12772 1141 aa12.18□□□□□ -0.46
SYNE2-224ENST00000557024 HS6ST3Q8IZP7 471 aa12.18□□□□□ -0.46
SYNE2-224ENST00000557024 ANKIB1Q9P2G1 1089 aa12.18□□□□□ -0.46
SYNE2-224ENST00000557024 FARP1Q9Y4F1 1045 aaPredicted RBP12.18□□□□□ -0.46
SYNE2-224ENST00000557024 TAF1P21675 1872 aa12.18□□□□□ -0.46
SYNE2-224ENST00000557024 HTTP42858 3142 aa12.18□□□□□ -0.46
SYNE2-224ENST00000557024 MAPK8IP3Q9UPT6 1336 aa12.17□□□□□ -0.46
SYNE2-224ENST00000557024 FXR1P51114 621 aaKnown RBP eCLIP12.17□□□□□ -0.46
SYNE2-224ENST00000557024 GMLQ99445 158 aa12.17□□□□□ -0.46
SYNE2-224ENST00000557024 PODXL2Q9NZ53 605 aa12.17□□□□□ -0.46
SYNE2-224ENST00000557024 GGA1Q9UJY5 639 aa12.17□□□□□ -0.46
SYNE2-224ENST00000557024 IRS4O14654 1257 aaPredicted RBP12.16□□□□□ -0.46
SYNE2-224ENST00000557024 PTPN12Q05209 780 aaKnown RBP12.16□□□□□ -0.46
SYNE2-224ENST00000557024 KRT24Q2M2I5 525 aa12.16□□□□□ -0.46
SYNE2-224ENST00000557024 NBPF9Q3BBW0 867 aa12.16□□□□□ -0.46
SYNE2-224ENST00000557024 PLBD2Q8NHP8 589 aa12.16□□□□□ -0.46
SYNE2-224ENST00000557024 ISCA1Q9BUE6 129 aa12.16□□□□□ -0.46
SYNE2-224ENST00000557024 CFHR5Q9BXR6 569 aa12.16□□□□□ -0.46
SYNE2-224ENST00000557024 SEC31BQ9NQW1 1179 aa12.16□□□□□ -0.46
SYNE2-224ENST00000557024 CHPF2Q9P2E5 772 aa12.16□□□□□ -0.46
SYNE2-224ENST00000557024 TRIM17Q9Y577 477 aa12.16□□□□□ -0.46
SYNE2-224ENST00000557024 ZNF609O15014 1411 aa12.16□□□□□ -0.46
SYNE2-224ENST00000557024 POLR2AP24928 1970 aaKnown RBP12.16□□□□□ -0.46
SYNE2-224ENST00000557024 USP17L3A6NCW0 530 aa12.15□□□□□ -0.46
SYNE2-224ENST00000557024 USP17L4A6NCW7 530 aa12.15□□□□□ -0.46
SYNE2-224ENST00000557024 PYGBP11216 843 aa12.15□□□□□ -0.46
SYNE2-224ENST00000557024 NF2P35240 595 aa12.15□□□□□ -0.46
SYNE2-224ENST00000557024 PRKG1Q13976 671 aa12.15□□□□□ -0.46
SYNE2-224ENST00000557024 USP17L1Q7RTZ2 530 aa12.15□□□□□ -0.46
SYNE2-224ENST00000557024 SCN9AQ15858 1988 aa12.15□□□□□ -0.46
SYNE2-224ENST00000557024 DDX60Q8IY21 1712 aaKnown RBP12.14□□□□□ -0.47
SYNE2-224ENST00000557024 INTS3Q68E01 1043 aaKnown RBP12.14□□□□□ -0.47
SYNE2-224ENST00000557024 ANKRD13DQ6ZTN6 518 aa12.14□□□□□ -0.47
SYNE2-224ENST00000557024 OTOP1Q7RTM1 612 aa12.14□□□□□ -0.47
SYNE2-224ENST00000557024 MXD3Q9BW11 206 aa12.14□□□□□ -0.47
SYNE2-224ENST00000557024 DLG5Q8TDM6 1919 aa12.13□□□□□ -0.47
SYNE2-224ENST00000557024 EN2P19622 333 aaPredicted RBP12.13□□□□□ -0.47
SYNE2-224ENST00000557024 RIPK4P57078 832 aa12.13□□□□□ -0.47
SYNE2-224ENST00000557024 SPRYD7Q5W111 196 aa12.13□□□□□ -0.47
SYNE2-224ENST00000557024 ARMC9Q7Z3E5 817 aa12.13□□□□□ -0.47
SYNE2-224ENST00000557024 TSHZ2Q9NRE2 1034 aa12.13□□□□□ -0.47
SYNE2-224ENST00000557024 BABAM1Q9NWV8 329 aa12.13□□□□□ -0.47
SYNE2-224ENST00000557024 WNT10BO00744 389 aa12.12□□□□□ -0.47
SYNE2-224ENST00000557024 SASH1O94885 1247 aa12.12□□□□□ -0.47
SYNE2-224ENST00000557024 ALDH1A1P00352 501 aa12.12□□□□□ -0.47
SYNE2-224ENST00000557024 PODNQ7Z5L7 613 aa12.12□□□□□ -0.47
SYNE2-224ENST00000557024 FBXW7Q969H0 707 aa12.12□□□□□ -0.47
SYNE2-224ENST00000557024 CCDC85AQ96PX6 553 aaPredicted RBP12.12□□□□□ -0.47
SYNE2-224ENST00000557024 FZD1Q9UP38 647 aa12.12□□□□□ -0.47
SYNE2-224ENST00000557024 COLQQ9Y215 455 aaPredicted RBP12.12□□□□□ -0.47
SYNE2-224ENST00000557024 XDHP47989 1333 aa12.11□□□□□ -0.47
SYNE2-224ENST00000557024 WTIPA6NIX2 430 aaPredicted RBP12.11□□□□□ -0.47
SYNE2-224ENST00000557024 LDLRAD1Q5T700 205 aa12.11□□□□□ -0.47
SYNE2-224ENST00000557024 HDGFL1Q5TGJ6 251 aa12.11□□□□□ -0.47
SYNE2-224ENST00000557024 IFNL1Q8IU54 200 aa12.11□□□□□ -0.47
SYNE2-224ENST00000557024 OGFOD1Q8N543 542 aa12.11□□□□□ -0.47
SYNE2-224ENST00000557024 PNNQ9H307 717 aaKnown RBP12.11□□□□□ -0.47
SYNE2-224ENST00000557024 ANGEL1Q9UNK9 670 aaKnown RBP12.11□□□□□ -0.47
SYNE2-224ENST00000557024 PTPN22Q9Y2R2 807 aa12.11□□□□□ -0.47
SYNE2-224ENST00000557024 MANSC4A6NHS7 340 aaPredicted RBP12.1□□□□□ -0.47
SYNE2-224ENST00000557024 TRIM28Q13263 835 aaKnown RBP12.1□□□□□ -0.47
SYNE2-224ENST00000557024 CCDC152Q4G0S7 254 aa12.1□□□□□ -0.47
SYNE2-224ENST00000557024 DACT2Q5SW24 774 aa12.1□□□□□ -0.47
SYNE2-224ENST00000557024 ZBTB38Q8NAP3 1195 aaPredicted RBP12.1□□□□□ -0.47
SYNE2-224ENST00000557024 CD99L2Q8TCZ2 262 aa12.1□□□□□ -0.47
SYNE2-224ENST00000557024 IGF2BP3O00425 579 aaKnown RBP eCLIP12.09□□□□□ -0.47
SYNE2-224ENST00000557024 GABBR2O75899 941 aa12.09□□□□□ -0.47
SYNE2-224ENST00000557024 CD44P16070 742 aaKnown RBP12.09□□□□□ -0.47
SYNE2-224ENST00000557024 ATP2B4P23634 1241 aa12.09□□□□□ -0.47
SYNE2-224ENST00000557024 ANKRD18AQ8IVF6 992 aa12.09□□□□□ -0.47
SYNE2-224ENST00000557024 JARID2Q92833 1246 aaPredicted RBP12.09□□□□□ -0.47
SYNE2-224ENST00000557024 ARMC5Q96C12 935 aa12.09□□□□□ -0.47
SYNE2-224ENST00000557024 SLC10A4Q96EP9 437 aa12.09□□□□□ -0.47
SYNE2-224ENST00000557024 ERO1AQ96HE7 468 aa12.09□□□□□ -0.47
SYNE2-224ENST00000557024 TSPYL2Q9H2G4 693 aaPredicted RBP12.09□□□□□ -0.47
SYNE2-224ENST00000557024 DBF4Q9UBU7 674 aaPredicted RBP12.09□□□□□ -0.47
SYNE2-224ENST00000557024 LAS1LQ9Y4W2 734 aaKnown RBP12.09□□□□□ -0.47
SYNE2-224ENST00000557024 CENPFP49454 3210 aa12.09□□□□□ -0.47
SYNE2-224ENST00000557024 STK25O00506 426 aa12.08□□□□□ -0.48
SYNE2-224ENST00000557024 CHL1O00533 1208 aa12.08□□□□□ -0.48
SYNE2-224ENST00000557024 CHRM1P11229 460 aaPredicted RBP12.08□□□□□ -0.48
SYNE2-224ENST00000557024 HSP90B1P14625 803 aaKnown RBP12.08□□□□□ -0.48
SYNE2-224ENST00000557024 TMPOP42166 694 aaKnown RBP12.08□□□□□ -0.48
SYNE2-224ENST00000557024 INHBEP58166 350 aa12.08□□□□□ -0.48
SYNE2-224ENST00000557024 LMOD3Q0VAK6 560 aa12.08□□□□□ -0.48
SYNE2-224ENST00000557024 APOBEC3FQ8IUX4 373 aaKnown RBP12.08□□□□□ -0.48
SYNE2-224ENST00000557024 CLMNQ96JQ2 1002 aa12.08□□□□□ -0.48
SYNE2-224ENST00000557024 EFCC1Q9HA90 598 aa12.08□□□□□ -0.48
SYNE2-224ENST00000557024 MED23Q9ULK4 1368 aa12.07□□□□□ -0.48
SYNE2-224ENST00000557024 PDE8AO60658 829 aa12.07□□□□□ -0.48
SYNE2-224ENST00000557024 CAP1Q01518 475 aa12.07□□□□□ -0.48
SYNE2-224ENST00000557024 CRHR2Q13324 411 aa12.07□□□□□ -0.48
SYNE2-224ENST00000557024 STRIP1Q5VSL9 837 aa12.07□□□□□ -0.48
SYNE2-224ENST00000557024 RIC3Q7Z5B4 369 aa12.07□□□□□ -0.48
SYNE2-224ENST00000557024 WNK4Q96J92 1243 aa12.07□□□□□ -0.48
SYNE2-224ENST00000557024 TMEM106CQ9BVX2 250 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms