RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 SCN9AQ15858 1988 aa16.32■□□□□ 0.2
SHMT2-223ENST00000556689 CCDC30Q5VVM6 783 aa16.32■□□□□ 0.2
SHMT2-223ENST00000556689 ZNF296Q8WUU4 475 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-223ENST00000556689 APAF1O14727 1248 aa16.31■□□□□ 0.2
SHMT2-223ENST00000556689 MMP14P50281 582 aa16.31■□□□□ 0.2
SHMT2-223ENST00000556689 DACT2Q5SW24 774 aa16.31■□□□□ 0.2
SHMT2-223ENST00000556689 C8orf58Q8NAV2 365 aa16.31■□□□□ 0.2
SHMT2-223ENST00000556689 TTLL11Q8NHH1 800 aa16.31■□□□□ 0.2
SHMT2-223ENST00000556689 FBXW7Q969H0 707 aa16.31■□□□□ 0.2
SHMT2-223ENST00000556689 MAP3K2Q9Y2U5 619 aa16.31■□□□□ 0.2
SHMT2-223ENST00000556689 MYO3BQ8WXR4 1341 aa16.3■□□□□ 0.2
SHMT2-223ENST00000556689 AKAP11Q9UKA4 1901 aa16.3■□□□□ 0.2
SHMT2-223ENST00000556689 WNT10BO00744 389 aa16.3■□□□□ 0.2
SHMT2-223ENST00000556689 CCT4P50991 539 aaKnown RBP16.3■□□□□ 0.2
SHMT2-223ENST00000556689 STRIP1Q5VSL9 837 aa16.3■□□□□ 0.2
SHMT2-223ENST00000556689 MXD3Q9BW11 206 aa16.3■□□□□ 0.2
SHMT2-223ENST00000556689 COA1Q9GZY4 146 aa16.3■□□□□ 0.2
SHMT2-223ENST00000556689 MED23Q9ULK4 1368 aa16.29■□□□□ 0.2
SHMT2-223ENST00000556689 GPR25O00155 361 aa16.29■□□□□ 0.2
SHMT2-223ENST00000556689 IGKV5-2P06315 115 aa16.29■□□□□ 0.2
SHMT2-223ENST00000556689 MKRN3Q13064 507 aaKnown RBP16.29■□□□□ 0.2
SHMT2-223ENST00000556689 NOM1Q5C9Z4 860 aaKnown RBP16.29■□□□□ 0.2
SHMT2-223ENST00000556689 PRPF38BQ5VTL8 546 aaKnown RBP16.29■□□□□ 0.2
SHMT2-223ENST00000556689 TTLL5Q6EMB2 1281 aa16.29■□□□□ 0.2
SHMT2-223ENST00000556689 KSR2Q6VAB6 950 aa16.29■□□□□ 0.2
SHMT2-223ENST00000556689 GREM2Q9H772 168 aa16.29■□□□□ 0.2
SHMT2-223ENST00000556689 LEMD3Q9Y2U8 911 aa16.29■□□□□ 0.2
SHMT2-223ENST00000556689 PAPPA2Q9BXP8 1791 aa16.28■□□□□ 0.2
SHMT2-223ENST00000556689 PI4KAP2A4QPH2 592 aa16.28■□□□□ 0.2
SHMT2-223ENST00000556689 NEXNQ0ZGT2 675 aa16.28■□□□□ 0.2
SHMT2-223ENST00000556689 SREBF2Q12772 1141 aa16.28■□□□□ 0.2
SHMT2-223ENST00000556689 ARMC9Q7Z3E5 817 aa16.28■□□□□ 0.2
SHMT2-223ENST00000556689 PI4KAP1Q8N8J0 262 aa16.28■□□□□ 0.2
SHMT2-223ENST00000556689 IGHMBP2P38935 993 aaKnown RBP16.27■□□□□ 0.2
SHMT2-223ENST00000556689 PTPN12Q05209 780 aaKnown RBP16.27■□□□□ 0.2
SHMT2-223ENST00000556689 FBXO46Q6PJ61 603 aaPredicted RBP16.27■□□□□ 0.2
SHMT2-223ENST00000556689 FKTNO75072 461 aa16.26■□□□□ 0.19
SHMT2-223ENST00000556689 SASH1O94885 1247 aa16.26■□□□□ 0.19
SHMT2-223ENST00000556689 ZEB1P37275 1124 aaPredicted RBP16.26■□□□□ 0.19
SHMT2-223ENST00000556689 PRKG1Q13976 671 aa16.26■□□□□ 0.19
SHMT2-223ENST00000556689 TXNRD3Q86VQ6 643 aa16.26■□□□□ 0.19
SHMT2-223ENST00000556689 APOBEC3FQ8IUX4 373 aaKnown RBP16.26■□□□□ 0.19
SHMT2-223ENST00000556689 TSPYL6Q8N831 410 aa16.26■□□□□ 0.19
SHMT2-223ENST00000556689 H7C1W4 665 aa16.25■□□□□ 0.19
SHMT2-223ENST00000556689 KIAA0825Q8IV33 1275 aa16.25■□□□□ 0.19
SHMT2-223ENST00000556689 CFHR5Q9BXR6 569 aa16.25■□□□□ 0.19
SHMT2-223ENST00000556689 STK31Q9BXU1 1019 aa16.25■□□□□ 0.19
SHMT2-223ENST00000556689 ANKRD2Q9GZV1 360 aa16.25■□□□□ 0.19
SHMT2-223ENST00000556689 ZNF804BA4D1E1 1349 aa16.24■□□□□ 0.19
SHMT2-223ENST00000556689 NEURL1BA8MQ27 555 aa16.24■□□□□ 0.19
SHMT2-223ENST00000556689 INHBEP58166 350 aa16.24■□□□□ 0.19
SHMT2-223ENST00000556689 GTF2IP78347 998 aa16.24■□□□□ 0.19
SHMT2-223ENST00000556689 CWF19L2Q2TBE0 894 aaKnown RBP16.24■□□□□ 0.19
SHMT2-223ENST00000556689 LDLRAD1Q5T700 205 aa16.24■□□□□ 0.19
SHMT2-223ENST00000556689 SPRYD7Q5W111 196 aa16.24■□□□□ 0.19
SHMT2-223ENST00000556689 SLC10A4Q96EP9 437 aa16.24■□□□□ 0.19
SHMT2-223ENST00000556689 MPHOSPH8Q99549 860 aa16.24■□□□□ 0.19
SHMT2-223ENST00000556689 ALDH1A1P00352 501 aa16.23■□□□□ 0.19
SHMT2-223ENST00000556689 ITGA6P23229 1130 aa16.23■□□□□ 0.19
SHMT2-223ENST00000556689 UBE3BQ7Z3V4 1068 aa16.23■□□□□ 0.19
SHMT2-223ENST00000556689 R3HDMLQ9H3Y0 253 aa16.23■□□□□ 0.19
SHMT2-223ENST00000556689 ANGEL1Q9UNK9 670 aaKnown RBP16.23■□□□□ 0.19
SHMT2-223ENST00000556689 PDE4DIPQ5VU43 2346 aa16.22■□□□□ 0.19
SHMT2-223ENST00000556689 MANSC4A6NHS7 340 aaPredicted RBP16.22■□□□□ 0.19
SHMT2-223ENST00000556689 KCNJ4P48050 445 aa16.22■□□□□ 0.19
SHMT2-223ENST00000556689 ZBED3Q96IU2 234 aaPredicted RBP16.22■□□□□ 0.19
SHMT2-223ENST00000556689 DEFB129Q9H1M3 183 aa16.22■□□□□ 0.19
SHMT2-223ENST00000556689 PRKRIP1Q9H875 184 aaPredicted RBP16.22■□□□□ 0.19
SHMT2-223ENST00000556689 KLRK1P26718 216 aa16.21■□□□□ 0.19
SHMT2-223ENST00000556689 DLGAP5Q15398 846 aa16.21■□□□□ 0.19
SHMT2-223ENST00000556689 PLA2G12BQ9BX93 195 aa16.21■□□□□ 0.19
SHMT2-223ENST00000556689 CD209Q9NNX6 404 aa16.21■□□□□ 0.19
SHMT2-223ENST00000556689 PSME4Q14997 1843 aa16.21■□□□□ 0.19
SHMT2-223ENST00000556689 PPP1R12BO60237 982 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-223ENST00000556689 SLC4A2P04920 1241 aa16.2■□□□□ 0.18
SHMT2-223ENST00000556689 CSF1RP07333 972 aa16.2■□□□□ 0.18
SHMT2-223ENST00000556689 GCKRQ14397 625 aa16.2■□□□□ 0.18
SHMT2-223ENST00000556689 G2E3Q7L622 706 aa16.2■□□□□ 0.18
SHMT2-223ENST00000556689 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-223ENST00000556689 CHRNDQ07001 517 aa16.19■□□□□ 0.18
SHMT2-223ENST00000556689 MAP3K11Q16584 847 aa16.19■□□□□ 0.18
SHMT2-223ENST00000556689 IFNL1Q8IU54 200 aa16.19■□□□□ 0.18
SHMT2-223ENST00000556689 MTMR14Q8NCE2 650 aa16.19■□□□□ 0.18
SHMT2-223ENST00000556689 TSR2Q969E8 191 aaKnown RBP16.19■□□□□ 0.18
SHMT2-223ENST00000556689 FZD1Q9UP38 647 aa16.19■□□□□ 0.18
SHMT2-223ENST00000556689 UNCXA6NJT0 531 aa16.18■□□□□ 0.18
SHMT2-223ENST00000556689 ZBTB48P10074 688 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-223ENST00000556689 TWISTNBQ3B726 338 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-223ENST00000556689 SUPT20HL1Q3ZLR7 823 aa16.18■□□□□ 0.18
SHMT2-223ENST00000556689 INTS3Q68E01 1043 aaKnown RBP16.18■□□□□ 0.18
SHMT2-223ENST00000556689 MYH16Q9H6N6 1097 aa16.18■□□□□ 0.18
SHMT2-223ENST00000556689 TRIM17Q9Y577 477 aa16.18■□□□□ 0.18
SHMT2-223ENST00000556689 PPP2R3BQ9Y5P8 575 aa16.18■□□□□ 0.18
SHMT2-223ENST00000556689 ANKRD18BA2A2Z9 1011 aa16.17■□□□□ 0.18
SHMT2-223ENST00000556689 MYO1BO43795 1136 aa16.17■□□□□ 0.18
SHMT2-223ENST00000556689 CASP7P55210 303 aa16.17■□□□□ 0.18
SHMT2-223ENST00000556689 GCC1Q96CN9 775 aa16.17■□□□□ 0.18
SHMT2-223ENST00000556689 SNAP23O00161 211 aa16.16■□□□□ 0.18
SHMT2-223ENST00000556689 TAF5LO75529 589 aa16.16■□□□□ 0.18
SHMT2-223ENST00000556689 CFAP100Q494V2 611 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms