RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 G3V3G9 751 aa17.71■□□□□ 0.43
SHMT2-217ENST00000555116 CIAO1O76071 339 aa17.71■□□□□ 0.43
SHMT2-217ENST00000555116 UBE4AQ14139 1066 aa17.71■□□□□ 0.43
SHMT2-217ENST00000555116 TNIP1Q15025 636 aa17.71■□□□□ 0.43
SHMT2-217ENST00000555116 DCAF8Q5TAQ9 597 aa17.71■□□□□ 0.43
SHMT2-217ENST00000555116 DDX19BQ9UMR2 479 aa17.71■□□□□ 0.43
SHMT2-217ENST00000555116 PSMD14O00487 310 aa17.7■□□□□ 0.42
SHMT2-217ENST00000555116 SCNN1DP51172 638 aa17.7■□□□□ 0.42
SHMT2-217ENST00000555116 PODNQ7Z5L7 613 aa17.7■□□□□ 0.42
SHMT2-217ENST00000555116 COA1Q9GZY4 146 aa17.7■□□□□ 0.42
SHMT2-217ENST00000555116 SIL1Q9H173 461 aa17.7■□□□□ 0.42
SHMT2-217ENST00000555116 PDE8BO95263 885 aa17.69■□□□□ 0.42
SHMT2-217ENST00000555116 ATP8B2P98198 1209 aa17.69■□□□□ 0.42
SHMT2-217ENST00000555116 IQCA1LA6NCM1 817 aa17.69■□□□□ 0.42
SHMT2-217ENST00000555116 POLA2Q14181 598 aa17.69■□□□□ 0.42
SHMT2-217ENST00000555116 TAF1DQ9H5J8 278 aaPredicted RBP17.69■□□□□ 0.42
SHMT2-217ENST00000555116 HACL1Q9UJ83 578 aa17.69■□□□□ 0.42
SHMT2-217ENST00000555116 GMPSP49915 693 aaPredicted RBP17.68■□□□□ 0.42
SHMT2-217ENST00000555116 RRP1P56182 461 aaKnown RBP17.68■□□□□ 0.42
SHMT2-217ENST00000555116 SSH3Q8TE77 659 aa17.68■□□□□ 0.42
SHMT2-217ENST00000555116 ZBTB40Q9NUA8 1239 aa17.68■□□□□ 0.42
SHMT2-217ENST00000555116 TOMM70O94826 608 aa17.67■□□□□ 0.42
SHMT2-217ENST00000555116 VIL1P09327 827 aaKnown RBP17.67■□□□□ 0.42
SHMT2-217ENST00000555116 FGFR2P21802 821 aa17.67■□□□□ 0.42
SHMT2-217ENST00000555116 IL15P40933 162 aaPredicted RBP17.67■□□□□ 0.42
SHMT2-217ENST00000555116 CD209Q9NNX6 404 aa17.67■□□□□ 0.42
SHMT2-217ENST00000555116 GPRC5DQ9NZD1 345 aa17.67■□□□□ 0.42
SHMT2-217ENST00000555116 ADAMTSL1Q8N6G6 1762 aa17.67■□□□□ 0.42
SHMT2-217ENST00000555116 C16orf71Q8IYS4 520 aaPredicted RBP17.67■□□□□ 0.42
SHMT2-217ENST00000555116 ZBTB12Q9Y330 459 aaPredicted RBP17.67■□□□□ 0.42
SHMT2-217ENST00000555116 ZNF609O15014 1411 aa17.66■□□□□ 0.42
SHMT2-217ENST00000555116 EPHX2P34913 555 aa17.66■□□□□ 0.42
SHMT2-217ENST00000555116 EPS15P42566 896 aa17.66■□□□□ 0.42
SHMT2-217ENST00000555116 CEP85Q6P2H3 762 aa17.66■□□□□ 0.42
SHMT2-217ENST00000555116 USP17L3A6NCW0 530 aa17.65■□□□□ 0.42
SHMT2-217ENST00000555116 USP17L4A6NCW7 530 aa17.65■□□□□ 0.42
SHMT2-217ENST00000555116 LMOD1P29536 600 aaPredicted RBP17.65■□□□□ 0.42
SHMT2-217ENST00000555116 PUM3Q15397 648 aaKnown RBP17.65■□□□□ 0.42
SHMT2-217ENST00000555116 USP17L1Q7RTZ2 530 aa17.65■□□□□ 0.42
SHMT2-217ENST00000555116 ZNF804AQ7Z570 1209 aa17.65■□□□□ 0.42
SHMT2-217ENST00000555116 RBM46Q8TBY0 533 aaKnown RBP17.65■□□□□ 0.42
SHMT2-217ENST00000555116 FAM84BQ96KN1 310 aaPredicted RBP17.65■□□□□ 0.42
SHMT2-217ENST00000555116 CEP126Q9P2H0 1117 aa17.65■□□□□ 0.42
SHMT2-217ENST00000555116 ARAP2Q8WZ64 1704 aa17.65■□□□□ 0.42
SHMT2-217ENST00000555116 IL1R1P14778 569 aa17.65■□□□□ 0.42
SHMT2-217ENST00000555116 GYG1P46976 350 aa17.65■□□□□ 0.42
SHMT2-217ENST00000555116 C1QTNF8P60827 252 aa17.65■□□□□ 0.42
SHMT2-217ENST00000555116 RSBN1LQ6PCB5 846 aaPredicted RBP17.65■□□□□ 0.42
SHMT2-217ENST00000555116 DPF2Q92785 391 aa17.65■□□□□ 0.42
SHMT2-217ENST00000555116 MYH13Q9UKX3 1938 aa17.64■□□□□ 0.41
SHMT2-217ENST00000555116 SHTN1A0MZ66 631 aa17.64■□□□□ 0.41
SHMT2-217ENST00000555116 POTEIP0CG38 1075 aa17.64■□□□□ 0.41
SHMT2-217ENST00000555116 POTEJP0CG39 1038 aa17.64■□□□□ 0.41
SHMT2-217ENST00000555116 RPS12P25398 132 aaKnown RBP17.64■□□□□ 0.41
SHMT2-217ENST00000555116 DACT2Q5SW24 774 aa17.64■□□□□ 0.41
SHMT2-217ENST00000555116 FBXO33Q7Z6M2 555 aa17.64■□□□□ 0.41
SHMT2-217ENST00000555116 CHMP4BQ9H444 224 aaKnown RBP17.64■□□□□ 0.41
SHMT2-217ENST00000555116 HIBADHP31937 336 aaKnown RBP17.63■□□□□ 0.41
SHMT2-217ENST00000555116 STRIP1Q5VSL9 837 aa17.63■□□□□ 0.41
SHMT2-217ENST00000555116 LPIN2Q92539 896 aa17.63■□□□□ 0.41
SHMT2-217ENST00000555116 GMLQ99445 158 aa17.63■□□□□ 0.41
SHMT2-217ENST00000555116 CNOT7Q9UIV1 285 aaKnown RBP17.63■□□□□ 0.41
SHMT2-217ENST00000555116 IFIT1P09914 478 aaKnown RBP17.63■□□□□ 0.41
SHMT2-217ENST00000555116 TDRD7Q8NHU6 1098 aaKnown RBP17.63■□□□□ 0.41
SHMT2-217ENST00000555116 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.63■□□□□ 0.41
SHMT2-217ENST00000555116 SLC5A1P13866 664 aa17.62■□□□□ 0.41
SHMT2-217ENST00000555116 TFCP2Q12800 502 aa17.62■□□□□ 0.41
SHMT2-217ENST00000555116 G3BP1Q13283 466 aaKnown RBP eCLIP17.62■□□□□ 0.412e-7■■■□□ 18
SHMT2-217ENST00000555116 ATP2B3Q16720 1220 aa17.62■□□□□ 0.41
SHMT2-217ENST00000555116 TTLL5Q6EMB2 1281 aa17.62■□□□□ 0.41
SHMT2-217ENST00000555116 MICALL2Q8IY33 904 aa17.62■□□□□ 0.41
SHMT2-217ENST00000555116 AGBL3Q8NEM8 1001 aa17.62■□□□□ 0.41
SHMT2-217ENST00000555116 MXD3Q9BW11 206 aa17.62■□□□□ 0.41
SHMT2-217ENST00000555116 ADARB2Q9NS39 739 aaKnown RBP17.62■□□□□ 0.41
SHMT2-217ENST00000555116 NOP58Q9Y2X3 529 aaKnown RBP17.62■□□□□ 0.41
SHMT2-217ENST00000555116 POLR2AP24928 1970 aaKnown RBP17.61■□□□□ 0.41
SHMT2-217ENST00000555116 GTF2IP78347 998 aa17.61■□□□□ 0.41
SHMT2-217ENST00000555116 EAPPQ56P03 285 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-217ENST00000555116 PNMA8AQ86V59 439 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-217ENST00000555116 SASH1O94885 1247 aa17.61■□□□□ 0.41
SHMT2-217ENST00000555116 LDHDQ86WU2 507 aa17.61■□□□□ 0.41
SHMT2-217ENST00000555116 SIRT2Q8IXJ6 389 aa17.61■□□□□ 0.41
SHMT2-217ENST00000555116 RPAP2Q8IXW5 612 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-217ENST00000555116 SMC1BQ8NDV3 1235 aa17.61■□□□□ 0.41
SHMT2-217ENST00000555116 FBXW7Q969H0 707 aa17.61■□□□□ 0.41
SHMT2-217ENST00000555116 H7C1D1 291 aa17.6■□□□□ 0.41
SHMT2-217ENST00000555116 SURF6O75683 361 aaKnown RBP17.6■□□□□ 0.41
SHMT2-217ENST00000555116 BCAMP50895 628 aa17.6■□□□□ 0.41
SHMT2-217ENST00000555116 FSTL1Q12841 308 aa17.6■□□□□ 0.41
SHMT2-217ENST00000555116 CAVIN4Q5BKX8 364 aa17.6■□□□□ 0.41
SHMT2-217ENST00000555116 USP50Q70EL3 339 aaPredicted RBP17.6■□□□□ 0.41
SHMT2-217ENST00000555116 FAM205AQ6ZU69 1335 aa17.6■□□□□ 0.41
SHMT2-217ENST00000555116 NEFLP07196 543 aa17.59■□□□□ 0.41
SHMT2-217ENST00000555116 TRPM4Q8TD43 1214 aa17.59■□□□□ 0.41
SHMT2-217ENST00000555116 MYO3BQ8WXR4 1341 aa17.59■□□□□ 0.41
SHMT2-217ENST00000555116 HIRAP54198 1017 aaPredicted RBP17.58■□□□□ 0.41
SHMT2-217ENST00000555116 ZNF280AP59817 542 aaPredicted RBP17.58■□□□□ 0.41
SHMT2-217ENST00000555116 CHADLQ6NUI6 762 aa17.58■□□□□ 0.41
SHMT2-217ENST00000555116 VPS37DQ86XT2 251 aa17.58■□□□□ 0.41
SHMT2-217ENST00000555116 CERS5Q8N5B7 392 aa17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms