RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 COPS6Q7L5N1 327 aa14□□□□□ -0.17
SHMT2-216ENST00000554975 TBC1D16Q8TBP0 767 aa14□□□□□ -0.17
SHMT2-216ENST00000554975 XAGE3Q8WTP9 111 aa14□□□□□ -0.17
SHMT2-216ENST00000554975 ZNF609O15014 1411 aa13.99□□□□□ -0.17
SHMT2-216ENST00000554975 FKBP1BP68106 108 aa13.99□□□□□ -0.17
SHMT2-216ENST00000554975 TSPYL4Q9UJ04 414 aa13.99□□□□□ -0.17
SHMT2-216ENST00000554975 SPEF2Q9C093 1822 aa13.99□□□□□ -0.17
SHMT2-216ENST00000554975 HSP90AB3PQ58FF7 597 aa13.98□□□□□ -0.17
SHMT2-216ENST00000554975 NOM1Q5C9Z4 860 aaKnown RBP13.98□□□□□ -0.17
SHMT2-216ENST00000554975 FAM89AQ96GI7 184 aa13.98□□□□□ -0.17
SHMT2-216ENST00000554975 LAS1LQ9Y4W2 734 aaKnown RBP13.98□□□□□ -0.17
SHMT2-216ENST00000554975 KIF16BQ96L93 1317 aa13.97□□□□□ -0.17
SHMT2-216ENST00000554975 FKTNO75072 461 aa13.97□□□□□ -0.17
SHMT2-216ENST00000554975 SF3B3Q15393 1217 aaKnown RBP13.97□□□□□ -0.17
SHMT2-216ENST00000554975 RSBN1LQ6PCB5 846 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-216ENST00000554975 GMLQ99445 158 aa13.97□□□□□ -0.17
SHMT2-216ENST00000554975 EYA3Q99504 573 aa13.97□□□□□ -0.17
SHMT2-216ENST00000554975 MYOZ2Q9NPC6 264 aa13.97□□□□□ -0.17
SHMT2-216ENST00000554975 SPINK5Q9NQ38 1064 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-216ENST00000554975 NOP58Q9Y2X3 529 aaKnown RBP13.97□□□□□ -0.17
SHMT2-216ENST00000554975 PITPNM2Q9BZ72 1349 aa13.96□□□□□ -0.17
SHMT2-216ENST00000554975 RARSP54136 660 aaKnown RBP13.96□□□□□ -0.17
SHMT2-216ENST00000554975 RTL5Q5HYW3 569 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-216ENST00000554975 C20orf194Q5TEA3 1177 aa13.96□□□□□ -0.17
SHMT2-216ENST00000554975 CLUAP1Q96AJ1 413 aa13.96□□□□□ -0.17
SHMT2-216ENST00000554975 DDRGK1Q96HY6 314 aa13.96□□□□□ -0.17
SHMT2-216ENST00000554975 CFHR5Q9BXR6 569 aa13.96□□□□□ -0.17
SHMT2-216ENST00000554975 UFL1O94874 794 aa13.95□□□□□ -0.18
SHMT2-216ENST00000554975 KRT24Q2M2I5 525 aa13.95□□□□□ -0.18
SHMT2-216ENST00000554975 NBPF9Q3BBW0 867 aa13.95□□□□□ -0.18
SHMT2-216ENST00000554975 AGBL3Q8NEM8 1001 aa13.95□□□□□ -0.18
SHMT2-216ENST00000554975 BACH2Q9BYV9 841 aa13.95□□□□□ -0.18
SHMT2-216ENST00000554975 ZC3H12CQ9C0D7 883 aaKnown RBP13.95□□□□□ -0.18
SHMT2-216ENST00000554975 SEC31BQ9NQW1 1179 aa13.95□□□□□ -0.18
SHMT2-216ENST00000554975 ATP5J2-PTCD1G3V325 749 aa13.94□□□□□ -0.18
SHMT2-216ENST00000554975 EN2P19622 333 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-216ENST00000554975 PDE4AP27815 886 aa13.94□□□□□ -0.18
SHMT2-216ENST00000554975 RPS8P62241 208 aaKnown RBP13.94□□□□□ -0.18
SHMT2-216ENST00000554975 PTPN12Q05209 780 aaKnown RBP13.94□□□□□ -0.18
SHMT2-216ENST00000554975 TTLL12Q14166 644 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-216ENST00000554975 OTOP1Q7RTM1 612 aa13.94□□□□□ -0.18
SHMT2-216ENST00000554975 IPO9Q96P70 1041 aaKnown RBP13.94□□□□□ -0.18
SHMT2-216ENST00000554975 ISCA1Q9BUE6 129 aa13.94□□□□□ -0.18
SHMT2-216ENST00000554975 MXD3Q9BW11 206 aa13.94□□□□□ -0.18
SHMT2-216ENST00000554975 PODXL2Q9NZ53 605 aa13.94□□□□□ -0.18
SHMT2-216ENST00000554975 FZD1Q9UP38 647 aa13.94□□□□□ -0.18
SHMT2-216ENST00000554975 TRIM35Q9UPQ4 493 aa13.94□□□□□ -0.18
SHMT2-216ENST00000554975 TRIM17Q9Y577 477 aa13.94□□□□□ -0.18
SHMT2-216ENST00000554975 WTIPA6NIX2 430 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-216ENST00000554975 USP17L8P0C7I0 530 aa13.93□□□□□ -0.18
SHMT2-216ENST00000554975 CAP1Q01518 475 aa13.93□□□□□ -0.18
SHMT2-216ENST00000554975 PRKG1Q13976 671 aa13.93□□□□□ -0.18
SHMT2-216ENST00000554975 CHMP4BQ9H444 224 aaKnown RBP13.93□□□□□ -0.18
SHMT2-216ENST00000554975 COLQQ9Y215 455 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-216ENST00000554975 ECM29Q5VYK3 1845 aa13.92□□□□□ -0.18
SHMT2-216ENST00000554975 BCAR3O75815 825 aa13.92□□□□□ -0.18
SHMT2-216ENST00000554975 SREBF2Q12772 1141 aa13.92□□□□□ -0.18
SHMT2-216ENST00000554975 ZKSCAN2Q63HK3 967 aa13.92□□□□□ -0.18
SHMT2-216ENST00000554975 BABAM1Q9NWV8 329 aa13.92□□□□□ -0.18
SHMT2-216ENST00000554975 CHPF2Q9P2E5 772 aa13.92□□□□□ -0.18
SHMT2-216ENST00000554975 RANBP2P49792 3224 aaKnown RBP13.91□□□□□ -0.18
SHMT2-216ENST00000554975 G3V3G9 751 aa13.91□□□□□ -0.18
SHMT2-216ENST00000554975 IRS4O14654 1257 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-216ENST00000554975 DCAF8Q5TAQ9 597 aa13.91□□□□□ -0.18
SHMT2-216ENST00000554975 SPRYD7Q5W111 196 aa13.91□□□□□ -0.18
SHMT2-216ENST00000554975 ANKIB1Q9P2G1 1089 aa13.91□□□□□ -0.18
SHMT2-216ENST00000554975 GGA1Q9UJY5 639 aa13.91□□□□□ -0.18
SHMT2-216ENST00000554975 ZSWIM8A7E2V4 1837 aa13.91□□□□□ -0.18
SHMT2-216ENST00000554975 OTOFQ9HC10 1997 aa13.91□□□□□ -0.18
SHMT2-216ENST00000554975 MYH3P11055 1940 aa13.9□□□□□ -0.18
SHMT2-216ENST00000554975 IGF2BP3O00425 579 aaKnown RBP eCLIP13.9□□□□□ -0.18
SHMT2-216ENST00000554975 WNT10BO00744 389 aa13.9□□□□□ -0.18
SHMT2-216ENST00000554975 ALDH1L2Q3SY69 923 aa13.9□□□□□ -0.18
SHMT2-216ENST00000554975 INTS3Q68E01 1043 aaKnown RBP13.9□□□□□ -0.18
SHMT2-216ENST00000554975 FTSJ3Q8IY81 847 aaKnown RBP13.9□□□□□ -0.18
SHMT2-216ENST00000554975 PLBD2Q8NHP8 589 aa13.9□□□□□ -0.18
SHMT2-216ENST00000554975 SSC5DA1L4H1 1573 aa13.9□□□□□ -0.18
SHMT2-216ENST00000554975 USP17L3A6NCW0 530 aa13.89□□□□□ -0.19
SHMT2-216ENST00000554975 USP17L4A6NCW7 530 aa13.89□□□□□ -0.19
SHMT2-216ENST00000554975 CHL1O00533 1208 aa13.89□□□□□ -0.19
SHMT2-216ENST00000554975 IPO8O15397 1037 aaKnown RBP13.89□□□□□ -0.19
SHMT2-216ENST00000554975 SASH1O94885 1247 aa13.89□□□□□ -0.19
SHMT2-216ENST00000554975 LDLRAD1Q5T700 205 aa13.89□□□□□ -0.19
SHMT2-216ENST00000554975 USP17L1Q7RTZ2 530 aa13.89□□□□□ -0.19
SHMT2-216ENST00000554975 IFNL1Q8IU54 200 aa13.89□□□□□ -0.19
SHMT2-216ENST00000554975 CD99L2Q8TCZ2 262 aa13.89□□□□□ -0.19
SHMT2-216ENST00000554975 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-216ENST00000554975 ZBTB47Q9UFB7 747 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-216ENST00000554975 PTPN22Q9Y2R2 807 aa13.89□□□□□ -0.19
SHMT2-216ENST00000554975 FRAT1Q92837 279 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-216ENST00000554975 ARMC5Q96C12 935 aa13.88□□□□□ -0.19
SHMT2-216ENST00000554975 CCDC85AQ96PX6 553 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-216ENST00000554975 SMC4Q9NTJ3 1288 aa13.88□□□□□ -0.19
SHMT2-216ENST00000554975 DDX19BQ9UMR2 479 aa13.88□□□□□ -0.19
SHMT2-216ENST00000554975 CUL9Q8IWT3 2517 aa13.87□□□□□ -0.19
SHMT2-216ENST00000554975 NF2P35240 595 aa13.87□□□□□ -0.19
SHMT2-216ENST00000554975 GNAI1P63096 354 aa13.87□□□□□ -0.19
SHMT2-216ENST00000554975 MVPQ14764 893 aaKnown RBP13.87□□□□□ -0.19
SHMT2-216ENST00000554975 DACT2Q5SW24 774 aa13.87□□□□□ -0.19
SHMT2-216ENST00000554975 ANKRD13DQ6ZTN6 518 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms