RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 ZBTB22O15209 634 aa21.47■■□□□ 1.03
CLIP1-215ENST00000541108 MCAMP43121 646 aa21.47■■□□□ 1.03
CLIP1-215ENST00000541108 RBM25P49756 843 aaKnown RBP21.47■■□□□ 1.03
CLIP1-215ENST00000541108 FKBP4Q02790 459 aaKnown RBP eCLIP21.47■■□□□ 1.03
CLIP1-215ENST00000541108 LRRFIP1Q32MZ4 808 aaKnown RBP21.47■■□□□ 1.03
CLIP1-215ENST00000541108 SP8Q8IXZ3 490 aa21.47■■□□□ 1.03
CLIP1-215ENST00000541108 EDC3Q96F86 508 aaKnown RBP21.47■■□□□ 1.03
CLIP1-215ENST00000541108 ANKIB1Q9P2G1 1089 aa21.47■■□□□ 1.03
CLIP1-215ENST00000541108 AKAP11Q9UKA4 1901 aa21.46■■□□□ 1.03
CLIP1-215ENST00000541108 SGSM2O43147 1006 aa21.46■■□□□ 1.03
CLIP1-215ENST00000541108 ANP32AP39687 249 aaKnown RBP21.46■■□□□ 1.03
CLIP1-215ENST00000541108 SCARF1Q14162 830 aa21.46■■□□□ 1.03
CLIP1-215ENST00000541108 TTF1Q15361 905 aaPredicted RBP21.46■■□□□ 1.03
CLIP1-215ENST00000541108 STYK1Q6J9G0 422 aa21.46■■□□□ 1.03
CLIP1-215ENST00000541108 GNL3LQ9NVN8 582 aaKnown RBP21.46■■□□□ 1.03
CLIP1-215ENST00000541108 PODXL2Q9NZ53 605 aa21.46■■□□□ 1.03
CLIP1-215ENST00000541108 NDUFB9Q9Y6M9 179 aa21.46■■□□□ 1.03
CLIP1-215ENST00000541108 BCAMP50895 628 aa21.45■■□□□ 1.02
CLIP1-215ENST00000541108 CWC27Q6UX04 472 aaKnown RBP21.45■■□□□ 1.02
CLIP1-215ENST00000541108 USP26Q9BXU7 913 aa21.45■■□□□ 1.02
CLIP1-215ENST00000541108 C2CD5Q86YS7 1000 aa21.44■■□□□ 1.02
CLIP1-215ENST00000541108 ATP6V0A2Q9Y487 856 aa21.44■■□□□ 1.02
CLIP1-215ENST00000541108 RAD50Q92878 1312 aa21.44■■□□□ 1.02
CLIP1-215ENST00000541108 PPEF1O14829 653 aaPredicted RBP21.44■■□□□ 1.02
CLIP1-215ENST00000541108 ZAP70P43403 619 aa21.44■■□□□ 1.02
CLIP1-215ENST00000541108 C15orf52Q6ZUT6 534 aaKnown RBP21.44■■□□□ 1.02
CLIP1-215ENST00000541108 FBXO33Q7Z6M2 555 aa21.44■■□□□ 1.02
CLIP1-215ENST00000541108 SPATA5Q8NB90 893 aa21.44■■□□□ 1.02
CLIP1-215ENST00000541108 FAM84BQ96KN1 310 aaPredicted RBP21.44■■□□□ 1.02
CLIP1-215ENST00000541108 MTFR1LQ9H019 292 aa21.44■■□□□ 1.02
CLIP1-215ENST00000541108 SNRKQ9NRH2 765 aa21.44■■□□□ 1.02
CLIP1-215ENST00000541108 ATP2B4P23634 1241 aa21.43■■□□□ 1.02
CLIP1-215ENST00000541108 HMG20BQ9P0W2 317 aa21.43■■□□□ 1.02
CLIP1-215ENST00000541108 NSFL1CQ9UNZ2 370 aaKnown RBP21.43■■□□□ 1.02
CLIP1-215ENST00000541108 LRRC37AA6NMS7 1700 aa21.42■■□□□ 1.02
CLIP1-215ENST00000541108 WTIPA6NIX2 430 aaPredicted RBP21.42■■□□□ 1.02
CLIP1-215ENST00000541108 SEMA3EO15041 775 aa21.42■■□□□ 1.02
CLIP1-215ENST00000541108 ZFYP08048 801 aaPredicted RBP21.42■■□□□ 1.02
CLIP1-215ENST00000541108 RASGRF1Q13972 1273 aa21.42■■□□□ 1.02
CLIP1-215ENST00000541108 VPS37DQ86XT2 251 aa21.42■■□□□ 1.02
CLIP1-215ENST00000541108 ANTXR1Q9H6X2 564 aa21.42■■□□□ 1.02
CLIP1-215ENST00000541108 C10orf71Q711Q0 1435 aa21.42■■□□□ 1.02
CLIP1-215ENST00000541108 COL11A2P13942 1736 aaPredicted RBP21.42■■□□□ 1.02
CLIP1-215ENST00000541108 IRS2Q9Y4H2 1338 aa21.42■■□□□ 1.02
CLIP1-215ENST00000541108 CYP2E1P05181 493 aaPredicted RBP21.41■■□□□ 1.02
CLIP1-215ENST00000541108 GYG1P46976 350 aa21.41■■□□□ 1.02
CLIP1-215ENST00000541108 GPSM2P81274 684 aa21.41■■□□□ 1.02
CLIP1-215ENST00000541108 CNKSR1Q969H4 720 aa21.41■■□□□ 1.02
CLIP1-215ENST00000541108 TMX4Q9H1E5 349 aaPredicted RBP21.41■■□□□ 1.02
CLIP1-215ENST00000541108 HIBADHP31937 336 aaKnown RBP21.4■■□□□ 1.02
CLIP1-215ENST00000541108 NMIQ13287 307 aaPredicted RBP21.4■■□□□ 1.02
CLIP1-215ENST00000541108 PI16Q6UXB8 463 aa21.4■■□□□ 1.02
CLIP1-215ENST00000541108 KIAA1211Q6ZU35 1233 aa21.4■■□□□ 1.02
CLIP1-215ENST00000541108 ZNF622Q969S3 477 aaKnown RBP eCLIP21.4■■□□□ 1.021e-6■□□□□ 11.2
CLIP1-215ENST00000541108 IL25Q9H293 177 aa21.4■■□□□ 1.02
CLIP1-215ENST00000541108 GGA1Q9UJY5 639 aa21.4■■□□□ 1.02
CLIP1-215ENST00000541108 ZSCAN25Q6NSZ9 544 aa21.4■■□□□ 1.02
CLIP1-215ENST00000541108 FAM227BQ96M60 508 aa21.4■■□□□ 1.02
CLIP1-215ENST00000541108 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.4■■□□□ 1.02
CLIP1-215ENST00000541108 ANO2Q9NQ90 1003 aa21.4■■□□□ 1.02
CLIP1-215ENST00000541108 DENND2AQ9ULE3 1009 aa21.4■■□□□ 1.02
CLIP1-215ENST00000541108 PDS5AQ29RF7 1337 aaKnown RBP21.4■■□□□ 1.02
CLIP1-215ENST00000541108 RNF113AO15541 343 aaKnown RBP21.39■■□□□ 1.01
CLIP1-215ENST00000541108 POLD1P28340 1107 aa21.39■■□□□ 1.01
CLIP1-215ENST00000541108 R3HDM1Q15032 1099 aaKnown RBP21.39■■□□□ 1.01
CLIP1-215ENST00000541108 HELLSQ9NRZ9 838 aa21.39■■□□□ 1.01
CLIP1-215ENST00000541108 A0A0D9SFI3 127 aa21.37■■□□□ 1.01
CLIP1-215ENST00000541108 ZBTB7AO95365 584 aa21.37■■□□□ 1.01
CLIP1-215ENST00000541108 MCMDC2Q4G0Z9 681 aa21.37■■□□□ 1.01
CLIP1-215ENST00000541108 UFL1O94874 794 aa21.37■■□□□ 1.01
CLIP1-215ENST00000541108 KLRK1P26718 216 aa21.37■■□□□ 1.01
CLIP1-215ENST00000541108 ZMYM1Q5SVZ6 1142 aa21.37■■□□□ 1.01
CLIP1-215ENST00000541108 TBC1D16Q8TBP0 767 aa21.37■■□□□ 1.01
CLIP1-215ENST00000541108 LTBP1Q14766 1721 aa21.36■■□□□ 1.01
CLIP1-215ENST00000541108 CHRNA5P30532 468 aa21.36■■□□□ 1.01
CLIP1-215ENST00000541108 ZNF804AQ7Z570 1209 aa21.36■■□□□ 1.01
CLIP1-215ENST00000541108 TXNRD3Q86VQ6 643 aa21.36■■□□□ 1.01
CLIP1-215ENST00000541108 MPNDQ8N594 471 aa21.36■■□□□ 1.01
CLIP1-215ENST00000541108 LSG1Q9H089 658 aaKnown RBP21.36■■□□□ 1.01
CLIP1-215ENST00000541108 MED23Q9ULK4 1368 aa21.36■■□□□ 1.01
CLIP1-215ENST00000541108 KIF13BQ9NQT8 1826 aa21.36■■□□□ 1.01
CLIP1-215ENST00000541108 MCCP23508 829 aa21.35■■□□□ 1.01
CLIP1-215ENST00000541108 UBE3CQ15386 1083 aa21.35■■□□□ 1.01
CLIP1-215ENST00000541108 CC2D2BQ6DHV5 1058 aa21.35■■□□□ 1.01
CLIP1-215ENST00000541108 PRPF40BQ6NWY9 871 aaKnown RBP21.35■■□□□ 1.01
CLIP1-215ENST00000541108 DDRGK1Q96HY6 314 aa21.35■■□□□ 1.01
CLIP1-215ENST00000541108 PIH1D3Q9NQM4 214 aaKnown RBP21.35■■□□□ 1.01
CLIP1-215ENST00000541108 POLLQ9UGP5 575 aa21.35■■□□□ 1.01
CLIP1-215ENST00000541108 IGSF3O75054 1194 aa21.34■■□□□ 1.01
CLIP1-215ENST00000541108 TGFB2P61812 414 aa21.34■■□□□ 1.01
CLIP1-215ENST00000541108 MAP3K12Q12852 859 aa21.34■■□□□ 1.01
CLIP1-215ENST00000541108 SLC51AQ86UW1 340 aa21.34■■□□□ 1.01
CLIP1-215ENST00000541108 ATF5Q9Y2D1 282 aaPredicted RBP21.34■■□□□ 1.01
CLIP1-215ENST00000541108 MYH7P12883 1935 aa21.34■■□□□ 1.01
CLIP1-215ENST00000541108 FRAT2O75474 233 aaPredicted RBP21.34■■□□□ 1.01
CLIP1-215ENST00000541108 ADD2P35612 726 aa21.34■■□□□ 1.01
CLIP1-215ENST00000541108 WASHC4Q2M389 1173 aa21.34■■□□□ 1.01
CLIP1-215ENST00000541108 TDRD7Q8NHU6 1098 aaKnown RBP21.34■■□□□ 1.01
CLIP1-215ENST00000541108 DLEC1Q9Y238 1755 aa21.34■■□□□ 1.01
CLIP1-215ENST00000541108 DOCK2Q92608 1830 aa21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms