RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 PCSK2P16519 638 aa7.28□□□□□ -1.24
VPS13A-213ENST00000539950 CES1P23141 567 aa7.28□□□□□ -1.24
VPS13A-213ENST00000539950 CARD10Q9BWT7 1032 aa7.28□□□□□ -1.24
VPS13A-213ENST00000539950 ANO2Q9NQ90 1003 aa7.28□□□□□ -1.24
VPS13A-213ENST00000539950 KCNK4Q9NYG8 393 aa7.28□□□□□ -1.24
VPS13A-213ENST00000539950 NFKBIEO00221 500 aa7.27□□□□□ -1.25
VPS13A-213ENST00000539950 TRPA1O75762 1119 aa7.27□□□□□ -1.25
VPS13A-213ENST00000539950 WISP1O95388 367 aa7.27□□□□□ -1.25
VPS13A-213ENST00000539950 ZNF211Q13398 564 aaPredicted RBP7.27□□□□□ -1.25
VPS13A-213ENST00000539950 AAMPQ13685 434 aa7.27□□□□□ -1.25
VPS13A-213ENST00000539950 ALKBH2Q6NS38 261 aa7.27□□□□□ -1.25
VPS13A-213ENST00000539950 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.27□□□□□ -1.25
VPS13A-213ENST00000539950 DCAF11Q8TEB1 546 aa7.27□□□□□ -1.25
VPS13A-213ENST00000539950 HHIPQ96QV1 700 aa7.27□□□□□ -1.25
VPS13A-213ENST00000539950 ADAM19Q9H013 955 aa7.27□□□□□ -1.25
VPS13A-213ENST00000539950 FSCN2O14926 492 aa7.26□□□□□ -1.25
VPS13A-213ENST00000539950 FAM13AO94988 1023 aa7.26□□□□□ -1.25
VPS13A-213ENST00000539950 ABL1P00519 1130 aa7.26□□□□□ -1.25
VPS13A-213ENST00000539950 PTPRAP18433 802 aa7.26□□□□□ -1.25
VPS13A-213ENST00000539950 CD68P34810 354 aaPredicted RBP7.26□□□□□ -1.25
VPS13A-213ENST00000539950 Q6ZS46 218 aa7.26□□□□□ -1.25
VPS13A-213ENST00000539950 TTC16Q8NEE8 873 aa7.26□□□□□ -1.25
VPS13A-213ENST00000539950 DZANK1Q9NVP4 752 aa7.26□□□□□ -1.25
VPS13A-213ENST00000539950 SCO2A0A1W2PP80 73 aa7.25□□□□□ -1.25
VPS13A-213ENST00000539950 EREGO14944 169 aa7.25□□□□□ -1.25
VPS13A-213ENST00000539950 FZD6O60353 706 aa7.25□□□□□ -1.25
VPS13A-213ENST00000539950 FKBP4Q02790 459 aaKnown RBP eCLIP7.25□□□□□ -1.25
VPS13A-213ENST00000539950 PRR23CQ6ZRP0 262 aa7.25□□□□□ -1.25
VPS13A-213ENST00000539950 FOXD3Q9UJU5 478 aaPredicted RBP7.25□□□□□ -1.25
VPS13A-213ENST00000539950 MTMR7Q9Y216 660 aa7.25□□□□□ -1.25
VPS13A-213ENST00000539950 DDX3YO15523 660 aaKnown RBP7.24□□□□□ -1.25
VPS13A-213ENST00000539950 TNFRSF21O75509 655 aa7.24□□□□□ -1.25
VPS13A-213ENST00000539950 GLB1P16278 677 aa7.24□□□□□ -1.25
VPS13A-213ENST00000539950 SF3B2Q13435 895 aaKnown RBP7.24□□□□□ -1.25
VPS13A-213ENST00000539950 CCDC87Q9NVE4 849 aa7.24□□□□□ -1.25
VPS13A-213ENST00000539950 PDE2AO00408 941 aaPredicted RBP7.23□□□□□ -1.25
VPS13A-213ENST00000539950 ADAM11O75078 769 aa7.23□□□□□ -1.25
VPS13A-213ENST00000539950 FAM117BQ6P1L5 589 aa7.23□□□□□ -1.25
VPS13A-213ENST00000539950 ACAD11Q709F0 780 aa7.23□□□□□ -1.25
VPS13A-213ENST00000539950 KLHL23Q8NBE8 558 aa7.23□□□□□ -1.25
VPS13A-213ENST00000539950 FOXD4L4Q8WXT5 416 aaPredicted RBP7.23□□□□□ -1.25
VPS13A-213ENST00000539950 PMEPA1Q969W9 287 aa7.23□□□□□ -1.25
VPS13A-213ENST00000539950 KLHDC7BQ96G42 594 aa7.23□□□□□ -1.25
VPS13A-213ENST00000539950 UBL7Q96S82 380 aaPredicted RBP7.23□□□□□ -1.25
VPS13A-213ENST00000539950 H3BRJ5 948 aa7.22□□□□□ -1.25
VPS13A-213ENST00000539950 PHACTR2O75167 634 aa7.22□□□□□ -1.25
VPS13A-213ENST00000539950 USP5P45974 858 aa7.22□□□□□ -1.25
VPS13A-213ENST00000539950 ARTNQ5T4W7 220 aa7.22□□□□□ -1.25
VPS13A-213ENST00000539950 KIAA1211Q6ZU35 1233 aa7.22□□□□□ -1.25
VPS13A-213ENST00000539950 UBASH3BQ8TF42 649 aa7.22□□□□□ -1.25
VPS13A-213ENST00000539950 ZKSCAN3Q9BRR0 538 aa7.22□□□□□ -1.25
VPS13A-213ENST00000539950 SEC31BQ9NQW1 1179 aa7.22□□□□□ -1.25
VPS13A-213ENST00000539950 USTQ9Y2C2 406 aa7.22□□□□□ -1.25
VPS13A-213ENST00000539950 FAM177BA6PVY3 158 aa7.21□□□□□ -1.26
VPS13A-213ENST00000539950 CABP4P57796 275 aa7.21□□□□□ -1.26
VPS13A-213ENST00000539950 DUOXA2Q1HG44 320 aa7.21□□□□□ -1.26
VPS13A-213ENST00000539950 HGSNATQ68CP4 663 aa7.21□□□□□ -1.26
VPS13A-213ENST00000539950 GJD3Q8N144 294 aa7.21□□□□□ -1.26
VPS13A-213ENST00000539950 TMEM102Q8N9M5 508 aaPredicted RBP7.21□□□□□ -1.26
VPS13A-213ENST00000539950 SNX29Q8TEQ0 813 aa7.21□□□□□ -1.26
VPS13A-213ENST00000539950 OSMRQ99650 979 aa7.21□□□□□ -1.26
VPS13A-213ENST00000539950 ARID3AQ99856 593 aa7.21□□□□□ -1.26
VPS13A-213ENST00000539950 ZFP64Q9NPA5 681 aa7.21□□□□□ -1.26
VPS13A-213ENST00000539950 SOX13Q9UN79 622 aa7.21□□□□□ -1.26
VPS13A-213ENST00000539950 SERPINB4P48594 390 aa7.2□□□□□ -1.26
VPS13A-213ENST00000539950 PIP4K2BP78356 416 aa7.2□□□□□ -1.26
VPS13A-213ENST00000539950 EHHADHQ08426 723 aa7.2□□□□□ -1.26
VPS13A-213ENST00000539950 ECM1Q16610 540 aa7.2□□□□□ -1.26
VPS13A-213ENST00000539950 SLC7A3Q8WY07 619 aa7.2□□□□□ -1.26
VPS13A-213ENST00000539950 NXPE3Q969Y0 559 aa7.2□□□□□ -1.26
VPS13A-213ENST00000539950 KRTAP4-8Q9BYQ9 185 aa7.2□□□□□ -1.26
VPS13A-213ENST00000539950 LATS2Q9NRM7 1088 aa7.2□□□□□ -1.26
VPS13A-213ENST00000539950 ICMTO60725 284 aa7.19□□□□□ -1.26
VPS13A-213ENST00000539950 FSTP19883 344 aa7.19□□□□□ -1.26
VPS13A-213ENST00000539950 PEAR1Q5VY43 1037 aaPredicted RBP7.19□□□□□ -1.26
VPS13A-213ENST00000539950 ARMC10Q8N2F6 343 aa7.19□□□□□ -1.26
VPS13A-213ENST00000539950 WNT8BQ93098 351 aa7.19□□□□□ -1.26
VPS13A-213ENST00000539950 EGFL7Q9UHF1 273 aa7.19□□□□□ -1.26
VPS13A-213ENST00000539950 H3BRB1 525 aa7.18□□□□□ -1.26
VPS13A-213ENST00000539950 SUPT5HO00267 1087 aaKnown RBP7.18□□□□□ -1.26
VPS13A-213ENST00000539950 EDN3P14138 238 aa7.18□□□□□ -1.26
VPS13A-213ENST00000539950 NLRP12P59046 1061 aa7.18□□□□□ -1.26
VPS13A-213ENST00000539950 LRP8Q14114 963 aa7.18□□□□□ -1.26
VPS13A-213ENST00000539950 VN1R5Q7Z5H4 357 aa7.18□□□□□ -1.26
VPS13A-213ENST00000539950 CEP41Q9BYV8 373 aa7.18□□□□□ -1.26
VPS13A-213ENST00000539950 TUT1Q9H6E5 874 aaKnown RBP7.18□□□□□ -1.26
VPS13A-213ENST00000539950 ZFYVE28Q9HCC9 887 aa7.18□□□□□ -1.26
VPS13A-213ENST00000539950 OSGEPQ9NPF4 335 aa7.18□□□□□ -1.26
VPS13A-213ENST00000539950 AMOTL2Q9Y2J4 779 aa7.18□□□□□ -1.26
VPS13A-213ENST00000539950 HYAL3O43820 417 aaPredicted RBP7.17□□□□□ -1.26
VPS13A-213ENST00000539950 POLR3DP05423 398 aaPredicted RBP7.17□□□□□ -1.26
VPS13A-213ENST00000539950 B4GALNT3Q6L9W6 998 aa7.17□□□□□ -1.26
VPS13A-213ENST00000539950 ASAP3Q8TDY4 903 aa7.17□□□□□ -1.26
VPS13A-213ENST00000539950 BSNDQ8WZ55 320 aa7.17□□□□□ -1.26
VPS13A-213ENST00000539950 RNF112Q9ULX5 631 aa7.17□□□□□ -1.26
VPS13A-213ENST00000539950 RAXQ9Y2V3 346 aa7.17□□□□□ -1.26
VPS13A-213ENST00000539950 SOX1O00570 391 aaPredicted RBP7.16□□□□□ -1.26
VPS13A-213ENST00000539950 ARHGAP4P98171 946 aa7.16□□□□□ -1.26
VPS13A-213ENST00000539950 IKBKEQ14164 716 aa7.16□□□□□ -1.26
VPS13A-213ENST00000539950 FAM46AQ96IP4 442 aaKnown RBP7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms