RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 COPRSQ9NQ92 184 aa16.23■□□□□ 0.19
VPS28-216ENST00000533806 FBXO3Q9UK99 471 aa16.23■□□□□ 0.19
VPS28-216ENST00000533806 ZBTB12Q9Y330 459 aaPredicted RBP16.23■□□□□ 0.19
VPS28-216ENST00000533806 RPS12P25398 132 aaKnown RBP16.22■□□□□ 0.19
VPS28-216ENST00000533806 PNMA8AQ86V59 439 aaPredicted RBP16.22■□□□□ 0.19
VPS28-216ENST00000533806 FTSJ3Q8IY81 847 aaKnown RBP16.22■□□□□ 0.19
VPS28-216ENST00000533806 PANK1Q8TE04 598 aa16.22■□□□□ 0.19
VPS28-216ENST00000533806 SCN9AQ15858 1988 aa16.22■□□□□ 0.19
VPS28-216ENST00000533806 ADAMTSL1Q8N6G6 1762 aa16.21■□□□□ 0.19
VPS28-216ENST00000533806 USP17L3A6NCW0 530 aa16.21■□□□□ 0.19
VPS28-216ENST00000533806 USP17L4A6NCW7 530 aa16.21■□□□□ 0.19
VPS28-216ENST00000533806 PLIN1O60240 522 aa16.21■□□□□ 0.19
VPS28-216ENST00000533806 CIAO1O76071 339 aa16.21■□□□□ 0.19
VPS28-216ENST00000533806 PDE8BO95263 885 aa16.21■□□□□ 0.19
VPS28-216ENST00000533806 FGFR2P21802 821 aa16.21■□□□□ 0.19
VPS28-216ENST00000533806 LMOD1P29536 600 aaPredicted RBP16.21■□□□□ 0.19
VPS28-216ENST00000533806 KCNJ4P48050 445 aa16.21■□□□□ 0.19
VPS28-216ENST00000533806 DACT2Q5SW24 774 aa16.21■□□□□ 0.19
VPS28-216ENST00000533806 CHADLQ6NUI6 762 aa16.21■□□□□ 0.19
VPS28-216ENST00000533806 USP50Q70EL3 339 aaPredicted RBP16.21■□□□□ 0.19
VPS28-216ENST00000533806 USP17L1Q7RTZ2 530 aa16.21■□□□□ 0.19
VPS28-216ENST00000533806 LDHDQ86WU2 507 aa16.21■□□□□ 0.19
VPS28-216ENST00000533806 CD209Q9NNX6 404 aa16.21■□□□□ 0.19
VPS28-216ENST00000533806 CNOT7Q9UIV1 285 aaKnown RBP16.21■□□□□ 0.19
VPS28-216ENST00000533806 A0A1B0GUL6 1792 aa16.21■□□□□ 0.18
VPS28-216ENST00000533806 SHTN1A0MZ66 631 aa16.2■□□□□ 0.18
VPS28-216ENST00000533806 G3V3G9 751 aa16.2■□□□□ 0.18
VPS28-216ENST00000533806 IL1R1P14778 569 aa16.2■□□□□ 0.18
VPS28-216ENST00000533806 HSPA6P17066 643 aa16.2■□□□□ 0.18
VPS28-216ENST00000533806 HIRAP54198 1017 aaPredicted RBP16.2■□□□□ 0.18
VPS28-216ENST00000533806 DCAF8Q5TAQ9 597 aa16.2■□□□□ 0.18
VPS28-216ENST00000533806 STRIP1Q5VSL9 837 aa16.2■□□□□ 0.18
VPS28-216ENST00000533806 RSBN1LQ6PCB5 846 aaPredicted RBP16.2■□□□□ 0.18
VPS28-216ENST00000533806 FAM84BQ96KN1 310 aaPredicted RBP16.2■□□□□ 0.18
VPS28-216ENST00000533806 ADARB2Q9NS39 739 aaKnown RBP16.2■□□□□ 0.18
VPS28-216ENST00000533806 PGAP2Q9UHJ9 254 aa16.2■□□□□ 0.18
VPS28-216ENST00000533806 PNMA6EA0A0J9YXQ4 647 aa16.19■□□□□ 0.18
VPS28-216ENST00000533806 SRGAP3O43295 1099 aa16.19■□□□□ 0.18
VPS28-216ENST00000533806 MS4A1P11836 297 aa16.19■□□□□ 0.18
VPS28-216ENST00000533806 METTL24Q5JXM2 366 aa16.19■□□□□ 0.18
VPS28-216ENST00000533806 ITPRIPQ8IWB1 547 aa16.19■□□□□ 0.18
VPS28-216ENST00000533806 AGBL3Q8NEM8 1001 aa16.19■□□□□ 0.18
VPS28-216ENST00000533806 PA2G4Q9UQ80 394 aaKnown RBP16.19■□□□□ 0.18
VPS28-216ENST00000533806 ITGBL1O95965 494 aaPredicted RBP16.18■□□□□ 0.18
VPS28-216ENST00000533806 ZNF280AP59817 542 aaPredicted RBP16.18■□□□□ 0.18
VPS28-216ENST00000533806 POLA2Q14181 598 aa16.18■□□□□ 0.18
VPS28-216ENST00000533806 EAPPQ56P03 285 aaPredicted RBP16.18■□□□□ 0.18
VPS28-216ENST00000533806 FBXO33Q7Z6M2 555 aa16.18■□□□□ 0.18
VPS28-216ENST00000533806 MICALL2Q8IY33 904 aa16.18■□□□□ 0.18
VPS28-216ENST00000533806 YTHDC1Q96MU7 727 aaKnown RBP16.18■□□□□ 0.18
VPS28-216ENST00000533806 EGFRP00533 1210 aa16.17■□□□□ 0.18
VPS28-216ENST00000533806 IL15P40933 162 aaPredicted RBP16.17■□□□□ 0.18
VPS28-216ENST00000533806 ATP8B2P98198 1209 aa16.17■□□□□ 0.18
VPS28-216ENST00000533806 PDE3AQ14432 1141 aa16.17■□□□□ 0.18
VPS28-216ENST00000533806 MVPQ14764 893 aaKnown RBP16.17■□□□□ 0.18
VPS28-216ENST00000533806 ZNF804AQ7Z570 1209 aa16.17■□□□□ 0.18
VPS28-216ENST00000533806 TDRD7Q8NHU6 1098 aaKnown RBP16.17■□□□□ 0.18
VPS28-216ENST00000533806 TRPM4Q8TD43 1214 aa16.17■□□□□ 0.18
VPS28-216ENST00000533806 SSH3Q8TE77 659 aa16.17■□□□□ 0.18
VPS28-216ENST00000533806 SIL1Q9H173 461 aa16.17■□□□□ 0.18
VPS28-216ENST00000533806 H7C1D1 291 aa16.16■□□□□ 0.18
VPS28-216ENST00000533806 SASH1O94885 1247 aa16.16■□□□□ 0.18
VPS28-216ENST00000533806 GYG1P46976 350 aa16.16■□□□□ 0.18
VPS28-216ENST00000533806 GTF2IP78347 998 aa16.16■□□□□ 0.18
VPS28-216ENST00000533806 PUM3Q15397 648 aaKnown RBP16.16■□□□□ 0.18
VPS28-216ENST00000533806 C20orf194Q5TEA3 1177 aa16.16■□□□□ 0.18
VPS28-216ENST00000533806 TTLL5Q6EMB2 1281 aa16.16■□□□□ 0.18
VPS28-216ENST00000533806 ZC3H15Q8WU90 426 aaKnown RBP16.16■□□□□ 0.18
VPS28-216ENST00000533806 MXD3Q9BW11 206 aa16.16■□□□□ 0.18
VPS28-216ENST00000533806 ZNF646O15015 1829 aaPredicted RBP16.16■□□□□ 0.18
VPS28-216ENST00000533806 PASKQ96RG2 1323 aa16.16■□□□□ 0.18
VPS28-216ENST00000533806 PSME4Q14997 1843 aa16.15■□□□□ 0.18
VPS28-216ENST00000533806 HIBADHP31937 336 aaKnown RBP16.15■□□□□ 0.18
VPS28-216ENST00000533806 MAP1SQ66K74 1059 aaPredicted RBP16.15■□□□□ 0.18
VPS28-216ENST00000533806 SAMD7Q7Z3H4 446 aa16.15■□□□□ 0.18
VPS28-216ENST00000533806 CERS5Q8N5B7 392 aa16.15■□□□□ 0.18
VPS28-216ENST00000533806 LPIN2Q92539 896 aa16.15■□□□□ 0.18
VPS28-216ENST00000533806 C1orf115Q9H7X2 142 aa16.15■□□□□ 0.18
VPS28-216ENST00000533806 ZBTB40Q9NUA8 1239 aa16.15■□□□□ 0.18
VPS28-216ENST00000533806 CEP126Q9P2H0 1117 aa16.15■□□□□ 0.18
VPS28-216ENST00000533806 COG6Q9Y2V7 657 aa16.15■□□□□ 0.18
VPS28-216ENST00000533806 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.15■□□□□ 0.18
VPS28-216ENST00000533806 FAM205AQ6ZU69 1335 aa16.15■□□□□ 0.18
VPS28-216ENST00000533806 USP17L8P0C7I0 530 aa16.14■□□□□ 0.17
VPS28-216ENST00000533806 FKBP1AP62942 108 aaKnown RBP16.14■□□□□ 0.17
VPS28-216ENST00000533806 CNTROBQ8N137 903 aa16.14■□□□□ 0.17
VPS28-216ENST00000533806 MYO3BQ8WXR4 1341 aa16.14■□□□□ 0.17
VPS28-216ENST00000533806 ZBTB22O15209 634 aa16.13■□□□□ 0.17
VPS28-216ENST00000533806 MMP14P50281 582 aa16.13■□□□□ 0.17
VPS28-216ENST00000533806 BCAMP50895 628 aa16.13■□□□□ 0.17
VPS28-216ENST00000533806 APLP1P51693 650 aa16.13■□□□□ 0.17
VPS28-216ENST00000533806 TBC1D10BQ4KMP7 808 aaPredicted RBP16.13■□□□□ 0.17
VPS28-216ENST00000533806 CEP85Q6P2H3 762 aa16.13■□□□□ 0.17
VPS28-216ENST00000533806 DDX19BQ9UMR2 479 aa16.13■□□□□ 0.17
VPS28-216ENST00000533806 CLEC11AQ9Y240 323 aa16.13■□□□□ 0.17
VPS28-216ENST00000533806 IFIT1P09914 478 aaKnown RBP16.12■□□□□ 0.17
VPS28-216ENST00000533806 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.12■□□□□ 0.17
VPS28-216ENST00000533806 NOP58Q9Y2X3 529 aaKnown RBP16.12■□□□□ 0.17
VPS28-216ENST00000533806 TFCP2Q12800 502 aa16.11■□□□□ 0.17
VPS28-216ENST00000533806 ATP2B3Q16720 1220 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms