RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 DRC1Q96MC2 740 aa7.24□□□□□ -1.25
CD44-220ENST00000525688 RSRP1Q9BUV0 290 aa7.24□□□□□ -1.25
CD44-220ENST00000525688 OXCT2Q9BYC2 517 aaPredicted RBP7.24□□□□□ -1.25
CD44-220ENST00000525688 ACPPP15309 386 aa7.23□□□□□ -1.25
CD44-220ENST00000525688 MAP3K10Q02779 954 aa7.23□□□□□ -1.25
CD44-220ENST00000525688 SF3A1Q15459 793 aaKnown RBP7.23□□□□□ -1.25
CD44-220ENST00000525688 ZNF394Q53GI3 561 aa7.23□□□□□ -1.25
CD44-220ENST00000525688 PBX4Q9BYU1 374 aa7.23□□□□□ -1.25
CD44-220ENST00000525688 TTF2Q9UNY4 1162 aaKnown RBP7.23□□□□□ -1.25
CD44-220ENST00000525688 BMP4P12644 408 aa7.22□□□□□ -1.25
CD44-220ENST00000525688 GRIA4P48058 902 aa7.22□□□□□ -1.25
CD44-220ENST00000525688 DTHD1Q6ZMT9 781 aa7.22□□□□□ -1.25
CD44-220ENST00000525688 SV2BQ7L1I2 683 aa7.22□□□□□ -1.25
CD44-220ENST00000525688 NPAS3Q8IXF0 933 aa7.22□□□□□ -1.25
CD44-220ENST00000525688 MDFIQ99750 246 aa7.22□□□□□ -1.25
CD44-220ENST00000525688 ACBD3Q9H3P7 528 aa7.22□□□□□ -1.25
CD44-220ENST00000525688 ADARB2-AS1A8MUL3 147 aa7.21□□□□□ -1.26
CD44-220ENST00000525688 J3QW42 95 aa7.21□□□□□ -1.26
CD44-220ENST00000525688 PDE2AO00408 941 aaPredicted RBP7.21□□□□□ -1.26
CD44-220ENST00000525688 HMGB1P09429 215 aaKnown RBP7.21□□□□□ -1.26
CD44-220ENST00000525688 ARAFP10398 606 aa7.21□□□□□ -1.26
CD44-220ENST00000525688 RLBP1P12271 317 aa7.21□□□□□ -1.26
CD44-220ENST00000525688 RPS26P11Q5JNZ5 115 aaPredicted RBP7.21□□□□□ -1.26
CD44-220ENST00000525688 Q6ZNB5 142 aa7.21□□□□□ -1.26
CD44-220ENST00000525688 GMLQ99445 158 aa7.21□□□□□ -1.26
CD44-220ENST00000525688 RBSNQ9H1K0 784 aa7.21□□□□□ -1.26
CD44-220ENST00000525688 DNAJB12Q9NXW2 375 aaKnown RBP7.21□□□□□ -1.26
CD44-220ENST00000525688 A0A096LPE4 126 aa7.2□□□□□ -1.26
CD44-220ENST00000525688 A0A1W2PPZ6 126 aa7.2□□□□□ -1.26
CD44-220ENST00000525688 TRPA1O75762 1119 aa7.2□□□□□ -1.26
CD44-220ENST00000525688 GHRHP01286 108 aa7.2□□□□□ -1.26
CD44-220ENST00000525688 MX2P20592 715 aa7.2□□□□□ -1.26
CD44-220ENST00000525688 PWP1Q13610 501 aa7.2□□□□□ -1.26
CD44-220ENST00000525688 GNL2Q13823 731 aaKnown RBP7.2□□□□□ -1.26
CD44-220ENST00000525688 GAS6Q14393 721 aa7.2□□□□□ -1.26
CD44-220ENST00000525688 CCDC85BQ15834 202 aaPredicted RBP7.2□□□□□ -1.26
CD44-220ENST00000525688 HHIPQ96QV1 700 aa7.2□□□□□ -1.26
CD44-220ENST00000525688 UBE2OQ9C0C9 1292 aaKnown RBP7.2□□□□□ -1.26
CD44-220ENST00000525688 CEP44Q9C0F1 390 aa7.2□□□□□ -1.26
CD44-220ENST00000525688 RASSF4Q9H2L5 321 aa7.2□□□□□ -1.26
CD44-220ENST00000525688 CAPN10Q9HC96 672 aa7.2□□□□□ -1.26
CD44-220ENST00000525688 KLF15Q9UIH9 416 aa7.2□□□□□ -1.26
CD44-220ENST00000525688 AKAP2Q9Y2D5 859 aa7.2□□□□□ -1.26
CD44-220ENST00000525688 PCDHGB7Q9Y5F8 929 aa7.2□□□□□ -1.26
CD44-220ENST00000525688 METTL12A8MUP2 240 aa7.19□□□□□ -1.26
CD44-220ENST00000525688 ADH6P28332 368 aa7.19□□□□□ -1.26
CD44-220ENST00000525688 MAP2K3P46734 347 aa7.19□□□□□ -1.26
CD44-220ENST00000525688 MLLT1Q03111 559 aaPredicted RBP7.19□□□□□ -1.26
CD44-220ENST00000525688 SPRED3Q2MJR0 410 aa7.19□□□□□ -1.26
CD44-220ENST00000525688 HFE2Q6ZVN8 426 aa7.19□□□□□ -1.26
CD44-220ENST00000525688 POP1Q99575 1024 aaKnown RBP7.19□□□□□ -1.26
CD44-220ENST00000525688 ZNF576Q9H609 170 aa7.19□□□□□ -1.26
CD44-220ENST00000525688 COPRSQ9NQ92 184 aa7.19□□□□□ -1.26
CD44-220ENST00000525688 NXF1Q9UBU9 619 aaKnown RBP7.19□□□□□ -1.26
CD44-220ENST00000525688 SLC6A14Q9UN76 642 aa7.19□□□□□ -1.26
CD44-220ENST00000525688 SMNDC1O75940 238 aaKnown RBP eCLIP7.18□□□□□ -1.26
CD44-220ENST00000525688 GJA8P48165 433 aa7.18□□□□□ -1.26
CD44-220ENST00000525688 TNNI2P48788 182 aa7.18□□□□□ -1.26
CD44-220ENST00000525688 PCBP4P57723 403 aaKnown RBP7.18□□□□□ -1.26
CD44-220ENST00000525688 ATP11AP98196 1134 aa7.18□□□□□ -1.26
CD44-220ENST00000525688 RELL1Q8IUW5 271 aa7.18□□□□□ -1.26
CD44-220ENST00000525688 UBXN4Q92575 508 aa7.18□□□□□ -1.26
CD44-220ENST00000525688 IGFLR1Q9H665 355 aa7.18□□□□□ -1.26
CD44-220ENST00000525688 MBIPQ9NS73 344 aa7.18□□□□□ -1.26
CD44-220ENST00000525688 KBTBD4Q9NVX7 518 aa7.18□□□□□ -1.26
CD44-220ENST00000525688 FRRS1LQ9P0K9 344 aa7.18□□□□□ -1.26
CD44-220ENST00000525688 NSFL1CQ9UNZ2 370 aaKnown RBP7.18□□□□□ -1.26
CD44-220ENST00000525688 VSIG8P0DPA2 414 aa7.17□□□□□ -1.26
CD44-220ENST00000525688 EIF2AK2P19525 551 aaKnown RBP7.17□□□□□ -1.26
CD44-220ENST00000525688 ADH7P40394 386 aa7.17□□□□□ -1.26
CD44-220ENST00000525688 FAM35AQ86V20 835 aa7.17□□□□□ -1.26
CD44-220ENST00000525688 BSNDQ8WZ55 320 aa7.17□□□□□ -1.26
CD44-220ENST00000525688 TTC9Q92623 222 aa7.17□□□□□ -1.26
CD44-220ENST00000525688 PLD4Q96BZ4 506 aa7.17□□□□□ -1.26
CD44-220ENST00000525688 TMEM74Q96NL1 305 aa7.17□□□□□ -1.26
CD44-220ENST00000525688 NECAB3Q96P71 396 aaPredicted RBP7.17□□□□□ -1.26
CD44-220ENST00000525688 SEC31BQ9NQW1 1179 aa7.17□□□□□ -1.26
CD44-220ENST00000525688 KCNQ5Q9NR82 932 aa7.17□□□□□ -1.26
CD44-220ENST00000525688 INPP5FQ9Y2H2 1132 aa7.17□□□□□ -1.26
CD44-220ENST00000525688 H3BM21 787 aa7.16□□□□□ -1.26
CD44-220ENST00000525688 CPB1P15086 417 aa7.16□□□□□ -1.26
CD44-220ENST00000525688 PERM1Q5SV97 790 aa7.16□□□□□ -1.26
CD44-220ENST00000525688 CEP135Q66GS9 1140 aa7.16□□□□□ -1.26
CD44-220ENST00000525688 FCHSD1Q86WN1 690 aa7.16□□□□□ -1.26
CD44-220ENST00000525688 GPR161Q8N6U8 529 aaKnown RBP7.16□□□□□ -1.26
CD44-220ENST00000525688 RASGRP4Q8TDF6 673 aa7.16□□□□□ -1.26
CD44-220ENST00000525688 ASAP3Q8TDY4 903 aa7.16□□□□□ -1.26
CD44-220ENST00000525688 TRIM56Q9BRZ2 755 aaKnown RBP7.16□□□□□ -1.26
CD44-220ENST00000525688 ADAM19Q9H013 955 aa7.16□□□□□ -1.26
CD44-220ENST00000525688 PRKAG2Q9UGJ0 569 aa7.16□□□□□ -1.26
CD44-220ENST00000525688 ELOA3CA0A087WX78 387 aaPredicted RBP7.15□□□□□ -1.26
CD44-220ENST00000525688 ELOA3DA6NLF2 546 aaPredicted RBP7.15□□□□□ -1.26
CD44-220ENST00000525688 ENC1O14682 589 aa7.15□□□□□ -1.26
CD44-220ENST00000525688 TBC1D8BQ0IIM8 1120 aa7.15□□□□□ -1.26
CD44-220ENST00000525688 FAAP100Q0VG06 881 aa7.15□□□□□ -1.26
CD44-220ENST00000525688 ELOA3BQ3SY89 546 aa7.15□□□□□ -1.26
CD44-220ENST00000525688 TPTE2Q6XPS3 522 aa7.15□□□□□ -1.26
CD44-220ENST00000525688 CACTIN-AS1Q8N1I8 211 aa7.15□□□□□ -1.26
CD44-220ENST00000525688 PHC3Q8NDX5 983 aa7.15□□□□□ -1.26
CD44-220ENST00000525688 ELOA3Q8NG57 546 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms