RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 GDF6Q6KF10 455 aaPredicted RBP9.7□□□□□ -0.86
SKP1-213ENST00000524288 IL22RA1Q8N6P7 574 aa9.7□□□□□ -0.86
SKP1-213ENST00000524288 NUDT16Q96DE0 195 aaKnown RBP9.69□□□□□ -0.86
SKP1-213ENST00000524288 SSBP4Q9BWG4 385 aaPredicted RBP9.69□□□□□ -0.86
SKP1-213ENST00000524288 SMNDC1O75940 238 aaKnown RBP eCLIP9.68□□□□□ -0.86
SKP1-213ENST00000524288 ZNF16P17020 682 aaPredicted RBP9.68□□□□□ -0.86
SKP1-213ENST00000524288 EIF1AXP47813 144 aaKnown RBP9.68□□□□□ -0.86
SKP1-213ENST00000524288 XKR5Q6UX68 686 aa9.68□□□□□ -0.86
SKP1-213ENST00000524288 ATCAYQ86WG3 371 aa9.68□□□□□ -0.86
SKP1-213ENST00000524288 WFDC12Q8WWY7 111 aa9.68□□□□□ -0.86
SKP1-213ENST00000524288 ASB16Q96NS5 453 aa9.68□□□□□ -0.86
SKP1-213ENST00000524288 MRPL18Q9H0U6 180 aaKnown RBP9.68□□□□□ -0.86
SKP1-213ENST00000524288 ELP3Q9H9T3 547 aa9.68□□□□□ -0.86
SKP1-213ENST00000524288 CCDC87Q9NVE4 849 aa9.68□□□□□ -0.86
SKP1-213ENST00000524288 ALKBH2Q6NS38 261 aa9.67□□□□□ -0.86
SKP1-213ENST00000524288 ZSCAN29Q8IWY8 852 aaPredicted RBP9.67□□□□□ -0.86
SKP1-213ENST00000524288 TRIM33Q9UPN9 1127 aa9.67□□□□□ -0.86
SKP1-213ENST00000524288 PPME1Q9Y570 386 aa9.67□□□□□ -0.86
SKP1-213ENST00000524288 NPR3P17342 541 aa9.66□□□□□ -0.86
SKP1-213ENST00000524288 COL13A1Q5TAT6 717 aaPredicted RBP9.66□□□□□ -0.86
SKP1-213ENST00000524288 ZNF438Q7Z4V0 828 aa9.66□□□□□ -0.86
SKP1-213ENST00000524288 TMEM130Q8N3G9 435 aa9.66□□□□□ -0.86
SKP1-213ENST00000524288 Q8N3U1 123 aa9.66□□□□□ -0.86
SKP1-213ENST00000524288 TMC1Q8TDI8 760 aa9.66□□□□□ -0.86
SKP1-213ENST00000524288 TP53INP1Q96A56 240 aa9.66□□□□□ -0.86
SKP1-213ENST00000524288 MRRFQ96E11 262 aaKnown RBP9.66□□□□□ -0.86
SKP1-213ENST00000524288 BRPF3Q9ULD4 1205 aa9.66□□□□□ -0.86
SKP1-213ENST00000524288 NDUFB5O43674 189 aa9.65□□□□□ -0.86
SKP1-213ENST00000524288 MZF1P28698 734 aaPredicted RBP9.65□□□□□ -0.86
SKP1-213ENST00000524288 SETDB1Q15047 1291 aa9.65□□□□□ -0.86
SKP1-213ENST00000524288 ZMYM1Q5SVZ6 1142 aa9.65□□□□□ -0.86
SKP1-213ENST00000524288 TMC7Q7Z402 723 aa9.65□□□□□ -0.86
SKP1-213ENST00000524288 FZD6O60353 706 aa9.64□□□□□ -0.87
SKP1-213ENST00000524288 NOS3P29474 1203 aa9.64□□□□□ -0.87
SKP1-213ENST00000524288 IREB2P48200 963 aaKnown RBP9.64□□□□□ -0.87
SKP1-213ENST00000524288 XP32Q5T750 250 aa9.64□□□□□ -0.87
SKP1-213ENST00000524288 CEP135Q66GS9 1140 aa9.64□□□□□ -0.87
SKP1-213ENST00000524288 TTC16Q8NEE8 873 aa9.64□□□□□ -0.87
SKP1-213ENST00000524288 EDEM1Q92611 657 aa9.64□□□□□ -0.87
SKP1-213ENST00000524288 AKTIPQ9H8T0 292 aa9.64□□□□□ -0.87
SKP1-213ENST00000524288 TMEM63CQ9P1W3 806 aa9.64□□□□□ -0.87
SKP1-213ENST00000524288 KIAA1522Q9P206 1035 aaPredicted RBP9.64□□□□□ -0.87
SKP1-213ENST00000524288 PDGFAP04085 211 aa9.63□□□□□ -0.87
SKP1-213ENST00000524288 ATP11AP98196 1134 aa9.63□□□□□ -0.87
SKP1-213ENST00000524288 DNM1Q05193 864 aaKnown RBP9.63□□□□□ -0.87
SKP1-213ENST00000524288 PRSS36Q5K4E3 855 aa9.63□□□□□ -0.87
SKP1-213ENST00000524288 NCAPG2Q86XI2 1143 aa9.63□□□□□ -0.87
SKP1-213ENST00000524288 CEP120Q8N960 986 aa9.63□□□□□ -0.87
SKP1-213ENST00000524288 PMEPA1Q969W9 287 aa9.63□□□□□ -0.87
SKP1-213ENST00000524288 PBX4Q9BYU1 374 aa9.63□□□□□ -0.87
SKP1-213ENST00000524288 CDC27P30260 824 aa9.62□□□□□ -0.87
SKP1-213ENST00000524288 FBXO33Q7Z6M2 555 aa9.62□□□□□ -0.87
SKP1-213ENST00000524288 RASSF4Q9H2L5 321 aa9.62□□□□□ -0.87
SKP1-213ENST00000524288 FAM177BA6PVY3 158 aa9.61□□□□□ -0.87
SKP1-213ENST00000524288 CYP2E1P05181 493 aaPredicted RBP9.61□□□□□ -0.87
SKP1-213ENST00000524288 P4HBP07237 508 aaKnown RBP9.61□□□□□ -0.87
SKP1-213ENST00000524288 RBCK1Q9BYM8 510 aa9.61□□□□□ -0.87
SKP1-213ENST00000524288 F8W735 103 aaPredicted RBP9.6□□□□□ -0.87
SKP1-213ENST00000524288 PTPRAP18433 802 aa9.6□□□□□ -0.87
SKP1-213ENST00000524288 USP5P45974 858 aa9.6□□□□□ -0.87
SKP1-213ENST00000524288 EHHADHQ08426 723 aa9.6□□□□□ -0.87
SKP1-213ENST00000524288 EAPPQ56P03 285 aaPredicted RBP9.6□□□□□ -0.87
SKP1-213ENST00000524288 ZNF326Q5BKZ1 582 aaKnown RBP9.6□□□□□ -0.87
SKP1-213ENST00000524288 FAM117BQ6P1L5 589 aa9.6□□□□□ -0.87
SKP1-213ENST00000524288 Q6ZS46 218 aa9.6□□□□□ -0.87
SKP1-213ENST00000524288 DZIP1LQ8IYY4 767 aaKnown RBP9.6□□□□□ -0.87
SKP1-213ENST00000524288 MEGF10Q96KG7 1140 aa9.6□□□□□ -0.87
SKP1-213ENST00000524288 SALL4Q9UJQ4 1053 aa9.6□□□□□ -0.87
SKP1-213ENST00000524288 POLIQ9UNA4 740 aa9.6□□□□□ -0.87
SKP1-213ENST00000524288 CES1P23141 567 aa9.59□□□□□ -0.87
SKP1-213ENST00000524288 C8orf34Q49A92 452 aa9.59□□□□□ -0.87
SKP1-213ENST00000524288 LACRTQ9GZZ8 138 aa9.59□□□□□ -0.87
SKP1-213ENST00000524288 ADAM19Q9H013 955 aa9.59□□□□□ -0.87
SKP1-213ENST00000524288 GGNBP2Q9H3C7 697 aa9.59□□□□□ -0.87
SKP1-213ENST00000524288 CNTN3Q9P232 1028 aa9.59□□□□□ -0.87
SKP1-213ENST00000524288 MAPK8P45983 427 aa9.58□□□□□ -0.88
SKP1-213ENST00000524288 KLHL23Q8NBE8 558 aa9.58□□□□□ -0.88
SKP1-213ENST00000524288 KANSL3Q9P2N6 904 aa9.58□□□□□ -0.88
SKP1-213ENST00000524288 LINC01387J3KSC0 135 aa9.57□□□□□ -0.88
SKP1-213ENST00000524288 GPR182O15218 404 aa9.57□□□□□ -0.88
SKP1-213ENST00000524288 CD68P34810 354 aaPredicted RBP9.57□□□□□ -0.88
SKP1-213ENST00000524288 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.57□□□□□ -0.88
SKP1-213ENST00000524288 SLC51AQ86UW1 340 aa9.57□□□□□ -0.88
SKP1-213ENST00000524288 C1orf127Q8N9H9 656 aa9.57□□□□□ -0.88
SKP1-213ENST00000524288 WNT8BQ93098 351 aa9.57□□□□□ -0.88
SKP1-213ENST00000524288 TREHO43280 583 aa9.56□□□□□ -0.88
SKP1-213ENST00000524288 PRR23CQ6ZRP0 262 aa9.56□□□□□ -0.88
SKP1-213ENST00000524288 GALNT11Q8NCW6 608 aa9.56□□□□□ -0.88
SKP1-213ENST00000524288 POP1Q99575 1024 aaKnown RBP9.56□□□□□ -0.88
SKP1-213ENST00000524288 FSCN2O14926 492 aa9.55□□□□□ -0.88
SKP1-213ENST00000524288 CABP4P57796 275 aa9.55□□□□□ -0.88
SKP1-213ENST00000524288 FOXD4L6Q3SYB3 417 aaPredicted RBP9.55□□□□□ -0.88
SKP1-213ENST00000524288 FOXD4L3Q6VB84 417 aaPredicted RBP9.55□□□□□ -0.88
SKP1-213ENST00000524288 SNX29Q8TEQ0 813 aa9.55□□□□□ -0.88
SKP1-213ENST00000524288 SETDB2Q96T68 719 aa9.55□□□□□ -0.88
SKP1-213ENST00000524288 DZANK1Q9NVP4 752 aa9.55□□□□□ -0.88
SKP1-213ENST00000524288 SCO2A0A1W2PP80 73 aa9.54□□□□□ -0.88
SKP1-213ENST00000524288 A6NHS1 94 aa9.54□□□□□ -0.88
SKP1-213ENST00000524288 H3BRJ5 948 aa9.54□□□□□ -0.88
SKP1-213ENST00000524288 TM4SF5O14894 197 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms