RNA–Protein interactions for RNA: ENST00000519914.5

SDC2-204, Transcript of syndecan 2, humanhuman

TSL 2 BASIC

Gene SDC2, Length 1,318 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-204ENST00000519914 TBX22Q9Y458 520 aa6.35□□□□□ -1.39
SDC2-204ENST00000519914 KDRP35968 1356 aa6.34□□□□□ -1.39
SDC2-204ENST00000519914 PIK3C2AO00443 1686 aa6.34□□□□□ -1.39
SDC2-204ENST00000519914 CNTNAP5Q8WYK1 1306 aa6.34□□□□□ -1.39
SDC2-204ENST00000519914 ZBTB7BO15156 539 aaPredicted RBP6.34□□□□□ -1.39
SDC2-204ENST00000519914 ERVK-9P63128 1117 aa6.34□□□□□ -1.39
SDC2-204ENST00000519914 NUCB1Q02818 461 aa6.34□□□□□ -1.39
SDC2-204ENST00000519914 RNF20Q5VTR2 975 aa6.34□□□□□ -1.39
SDC2-204ENST00000519914 TXNDC2Q86VQ3 553 aa6.34□□□□□ -1.39
SDC2-204ENST00000519914 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.34□□□□□ -1.39
SDC2-204ENST00000519914 NEDD1Q8NHV4 660 aa6.34□□□□□ -1.39
SDC2-204ENST00000519914 GCC1Q96CN9 775 aa6.34□□□□□ -1.39
SDC2-204ENST00000519914 PHACTR3Q96KR7 559 aa6.34□□□□□ -1.39
SDC2-204ENST00000519914 ARHGEF10LQ9HCE6 1279 aa6.34□□□□□ -1.39
SDC2-204ENST00000519914 ENAMQ9NRM1 1142 aa6.34□□□□□ -1.39
SDC2-204ENST00000519914 RAB6BQ9NRW1 208 aa6.34□□□□□ -1.39
SDC2-204ENST00000519914 MBIPQ9NS73 344 aa6.34□□□□□ -1.39
SDC2-204ENST00000519914 RGS12O14924 1447 aa6.34□□□□□ -1.4
SDC2-204ENST00000519914 PHRF1Q9P1Y6 1649 aaKnown RBP6.33□□□□□ -1.4
SDC2-204ENST00000519914 GPC1P35052 558 aa6.33□□□□□ -1.4
SDC2-204ENST00000519914 NR1H3Q13133 447 aa6.33□□□□□ -1.4
SDC2-204ENST00000519914 KANK3Q6NY19 840 aa6.33□□□□□ -1.4
SDC2-204ENST00000519914 ITPRIPQ8IWB1 547 aa6.33□□□□□ -1.4
SDC2-204ENST00000519914 API5Q9BZZ5 524 aaKnown RBP6.33□□□□□ -1.4
SDC2-204ENST00000519914 ANTXR1Q9H6X2 564 aa6.33□□□□□ -1.4
SDC2-204ENST00000519914 UPF2Q9HAU5 1272 aaKnown RBP6.33□□□□□ -1.4
SDC2-204ENST00000519914 GOPCQ9HD26 462 aa6.33□□□□□ -1.4
SDC2-204ENST00000519914 TIMMDC1Q9NPL8 285 aa6.33□□□□□ -1.4
SDC2-204ENST00000519914 DYRK1BQ9Y463 629 aa6.33□□□□□ -1.4
SDC2-204ENST00000519914 LAS1LQ9Y4W2 734 aaKnown RBP6.33□□□□□ -1.4
SDC2-204ENST00000519914 DNMT3AQ9Y6K1 912 aaPredicted RBP6.33□□□□□ -1.4
SDC2-204ENST00000519914 RGPD8O14715 1765 aaPredicted RBP6.33□□□□□ -1.4
SDC2-204ENST00000519914 ZNF142P52746 1687 aaPredicted RBP6.33□□□□□ -1.4
SDC2-204ENST00000519914 CRB1P82279 1406 aa6.33□□□□□ -1.4
SDC2-204ENST00000519914 NCOA3Q9Y6Q9 1424 aa6.33□□□□□ -1.4
SDC2-204ENST00000519914 SBNO1A3KN83 1393 aa6.33□□□□□ -1.4
SDC2-204ENST00000519914 RTL1A6NKG5 1358 aa6.33□□□□□ -1.4
SDC2-204ENST00000519914 CHD2O14647 1828 aaKnown RBP6.33□□□□□ -1.4
SDC2-204ENST00000519914 H7C1W4 665 aa6.32□□□□□ -1.4
SDC2-204ENST00000519914 CHL1O00533 1208 aa6.32□□□□□ -1.4
SDC2-204ENST00000519914 LTKP29376 864 aa6.32□□□□□ -1.4
SDC2-204ENST00000519914 PHKA2P46019 1235 aa6.32□□□□□ -1.4
SDC2-204ENST00000519914 RBM25P49756 843 aaKnown RBP6.32□□□□□ -1.4
SDC2-204ENST00000519914 EIF4A2Q14240 407 aaKnown RBP6.32□□□□□ -1.4
SDC2-204ENST00000519914 BMP2KLQ5H9B9 411 aa6.32□□□□□ -1.4
SDC2-204ENST00000519914 NBPF10Q6P3W6 841 aaKnown RBP6.32□□□□□ -1.4
SDC2-204ENST00000519914 CYP2U1Q7Z449 544 aa6.32□□□□□ -1.4
SDC2-204ENST00000519914 NBPF15Q8N660 670 aa6.32□□□□□ -1.4
SDC2-204ENST00000519914 TRERF1Q96PN7 1200 aa6.32□□□□□ -1.4
SDC2-204ENST00000519914 GRIP2Q9C0E4 1043 aa6.32□□□□□ -1.4
SDC2-204ENST00000519914 NWD1Q149M9 1564 aa6.32□□□□□ -1.4
SDC2-204ENST00000519914 ACEP12821 1306 aa6.31□□□□□ -1.4
SDC2-204ENST00000519914 SOS1Q07889 1333 aaPredicted RBP6.31□□□□□ -1.4
SDC2-204ENST00000519914 TUBGCP6Q96RT7 1819 aa6.31□□□□□ -1.4
SDC2-204ENST00000519914 HTATSF1O43719 755 aaKnown RBP6.31□□□□□ -1.4
SDC2-204ENST00000519914 CLN3Q13286 438 aa6.31□□□□□ -1.4
SDC2-204ENST00000519914 MLECQ14165 292 aa6.31□□□□□ -1.4
SDC2-204ENST00000519914 TWISTNBQ3B726 338 aaPredicted RBP6.31□□□□□ -1.4
SDC2-204ENST00000519914 INTS3Q68E01 1043 aaKnown RBP6.31□□□□□ -1.4
SDC2-204ENST00000519914 CHD1LQ86WJ1 897 aa6.31□□□□□ -1.4
SDC2-204ENST00000519914 SNX21Q969T3 373 aa6.31□□□□□ -1.4
SDC2-204ENST00000519914 ACDQ96AP0 544 aa6.31□□□□□ -1.4
SDC2-204ENST00000519914 GMCL1Q96IK5 515 aa6.31□□□□□ -1.4
SDC2-204ENST00000519914 OSBPL3Q9H4L5 887 aa6.31□□□□□ -1.4
SDC2-204ENST00000519914 GPAMQ9HCL2 828 aa6.31□□□□□ -1.4
SDC2-204ENST00000519914 ATP10DQ9P241 1426 aa6.31□□□□□ -1.4
SDC2-204ENST00000519914 FLT4P35916 1363 aa6.31□□□□□ -1.4
SDC2-204ENST00000519914 FAM208AQ9UK61 1670 aaKnown RBP6.31□□□□□ -1.4
SDC2-204ENST00000519914 PTPRCP08575 1304 aa6.31□□□□□ -1.4
SDC2-204ENST00000519914 IGSF1Q8N6C5 1336 aa6.31□□□□□ -1.4
SDC2-204ENST00000519914 LMTK3Q96Q04 1460 aa6.3□□□□□ -1.4
SDC2-204ENST00000519914 HMOX1P09601 288 aa6.3□□□□□ -1.4
SDC2-204ENST00000519914 BCRP11274 1271 aa6.3□□□□□ -1.4
SDC2-204ENST00000519914 MX2P20592 715 aa6.3□□□□□ -1.4
SDC2-204ENST00000519914 FBLN1P23142 703 aa6.3□□□□□ -1.4
SDC2-204ENST00000519914 TAS1R3Q7RTX0 852 aa6.3□□□□□ -1.4
SDC2-204ENST00000519914 TSPYL6Q8N831 410 aa6.3□□□□□ -1.4
SDC2-204ENST00000519914 NUCKS1Q9H1E3 243 aaKnown RBP6.3□□□□□ -1.4
SDC2-204ENST00000519914 BABAM1Q9NWV8 329 aa6.3□□□□□ -1.4
SDC2-204ENST00000519914 PODXL2Q9NZ53 605 aa6.3□□□□□ -1.4
SDC2-204ENST00000519914 ZNF330Q9Y3S2 320 aaPredicted RBP6.3□□□□□ -1.4
SDC2-204ENST00000519914 MED1Q15648 1581 aaPredicted RBP6.29□□□□□ -1.4
SDC2-204ENST00000519914 CEP170BQ9Y4F5 1589 aaPredicted RBP6.29□□□□□ -1.4
SDC2-204ENST00000519914 F11P03951 625 aa6.29□□□□□ -1.4
SDC2-204ENST00000519914 DDIT3P35638 169 aa6.29□□□□□ -1.4
SDC2-204ENST00000519914 RRS1Q15050 365 aaKnown RBP6.29□□□□□ -1.4
SDC2-204ENST00000519914 CCDC125Q86Z20 511 aa6.29□□□□□ -1.4
SDC2-204ENST00000519914 SIRT2Q8IXJ6 389 aa6.29□□□□□ -1.4
SDC2-204ENST00000519914 BEND7Q8N7W2 519 aaPredicted RBP6.29□□□□□ -1.4
SDC2-204ENST00000519914 C8orf58Q8NAV2 365 aa6.29□□□□□ -1.4
SDC2-204ENST00000519914 CDCA7Q9BWT1 371 aaPredicted RBP6.29□□□□□ -1.4
SDC2-204ENST00000519914 C22orf23Q9BZE7 217 aa6.29□□□□□ -1.4
SDC2-204ENST00000519914 DCTPP1Q9H773 170 aa6.29□□□□□ -1.4
SDC2-204ENST00000519914 SNRKQ9NRH2 765 aa6.29□□□□□ -1.4
SDC2-204ENST00000519914 EID1Q9Y6B2 187 aa6.29□□□□□ -1.4
SDC2-204ENST00000519914 PXDNLA1KZ92 1463 aa6.29□□□□□ -1.4
SDC2-204ENST00000519914 SETD1BQ9UPS6 1966 aaKnown RBP6.29□□□□□ -1.4
SDC2-204ENST00000519914 PHF20L1A8MW92 1017 aa6.28□□□□□ -1.4
SDC2-204ENST00000519914 SOCS7O14512 581 aa6.28□□□□□ -1.4
SDC2-204ENST00000519914 MCCD1P59942 119 aaPredicted RBP6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms