RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 EIF2AK2P19525 551 aaKnown RBP8.53□□□□□ -1.04
NUP54-218ENST00000515460 FOXD4L6Q3SYB3 417 aaPredicted RBP8.53□□□□□ -1.04
NUP54-218ENST00000515460 FOXD4L3Q6VB84 417 aaPredicted RBP8.53□□□□□ -1.04
NUP54-218ENST00000515460 WFDC8Q8IUA0 241 aa8.53□□□□□ -1.04
NUP54-218ENST00000515460 SMG9Q9H0W8 520 aaKnown RBP8.53□□□□□ -1.04
NUP54-218ENST00000515460 FRRS1LQ9P0K9 344 aa8.53□□□□□ -1.04
NUP54-218ENST00000515460 ZCCHC11Q5TAX3 1644 aaKnown RBP8.53□□□□□ -1.04
NUP54-218ENST00000515460 WDR7Q9Y4E6 1490 aa8.52□□□□□ -1.05
NUP54-218ENST00000515460 ARID4AP29374 1257 aaPredicted RBP8.52□□□□□ -1.05
NUP54-218ENST00000515460 GPLD1P80108 840 aa8.52□□□□□ -1.05
NUP54-218ENST00000515460 GRIK5Q16478 980 aa8.52□□□□□ -1.05
NUP54-218ENST00000515460 TP53INP1Q96A56 240 aa8.52□□□□□ -1.05
NUP54-218ENST00000515460 KDM5BQ9UGL1 1544 aa8.52□□□□□ -1.05
NUP54-218ENST00000515460 CEP350Q5VT06 3117 aa8.52□□□□□ -1.05
NUP54-218ENST00000515460 POGZQ7Z3K3 1410 aa8.52□□□□□ -1.05
NUP54-218ENST00000515460 FRMPD1Q5SYB0 1578 aa8.52□□□□□ -1.05
NUP54-218ENST00000515460 ACIN1Q9UKV3 1341 aaKnown RBP8.52□□□□□ -1.05
NUP54-218ENST00000515460 CARMIL1Q5VZK9 1371 aa8.51□□□□□ -1.05
NUP54-218ENST00000515460 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.51□□□□□ -1.05
NUP54-218ENST00000515460 J3QW42 95 aa8.51□□□□□ -1.05
NUP54-218ENST00000515460 FBXO11Q86XK2 927 aa8.51□□□□□ -1.05
NUP54-218ENST00000515460 SAP130Q9H0E3 1048 aa8.51□□□□□ -1.05
NUP54-218ENST00000515460 C11orf16Q9NQ32 467 aa8.51□□□□□ -1.05
NUP54-218ENST00000515460 TLR7Q9NYK1 1049 aaKnown RBP8.51□□□□□ -1.05
NUP54-218ENST00000515460 KIF27Q86VH2 1401 aa8.51□□□□□ -1.05
NUP54-218ENST00000515460 UHRF1BP1LA0JNW5 1464 aa8.51□□□□□ -1.05
NUP54-218ENST00000515460 ATG7O95352 703 aa8.5□□□□□ -1.05
NUP54-218ENST00000515460 PBXIP1Q96AQ6 731 aa8.5□□□□□ -1.05
NUP54-218ENST00000515460 UACAQ9BZF9 1416 aa8.5□□□□□ -1.05
NUP54-218ENST00000515460 SETD1BQ9UPS6 1966 aaKnown RBP8.5□□□□□ -1.05
NUP54-218ENST00000515460 PSAPP07602 524 aa8.49□□□□□ -1.05
NUP54-218ENST00000515460 IREB2P48200 963 aaKnown RBP8.49□□□□□ -1.05
NUP54-218ENST00000515460 NRLP54845 237 aa8.49□□□□□ -1.05
NUP54-218ENST00000515460 DTWD1Q8N5C7 304 aa8.49□□□□□ -1.05
NUP54-218ENST00000515460 STK32AQ8WU08 396 aa8.49□□□□□ -1.05
NUP54-218ENST00000515460 NSUN5Q96P11 429 aaKnown RBP8.49□□□□□ -1.05
NUP54-218ENST00000515460 MKNK1Q9BUB5 465 aa8.49□□□□□ -1.05
NUP54-218ENST00000515460 ZMIZ1Q9ULJ6 1067 aa8.49□□□□□ -1.05
NUP54-218ENST00000515460 FANCAO15360 1455 aa8.49□□□□□ -1.05
NUP54-218ENST00000515460 ARHGEF40Q8TER5 1519 aa8.49□□□□□ -1.05
NUP54-218ENST00000515460 TNIKQ9UKE5 1360 aa8.48□□□□□ -1.05
NUP54-218ENST00000515460 CAMSAP1Q5T5Y3 1602 aa8.48□□□□□ -1.05
NUP54-218ENST00000515460 MMP20O60882 483 aa8.48□□□□□ -1.05
NUP54-218ENST00000515460 EGFRP00533 1210 aa8.48□□□□□ -1.05
NUP54-218ENST00000515460 H2AFB1P0C5Y9 115 aa8.48□□□□□ -1.05
NUP54-218ENST00000515460 H2AFB2P0C5Z0 115 aa8.48□□□□□ -1.05
NUP54-218ENST00000515460 NAA30Q147X3 362 aaPredicted RBP8.48□□□□□ -1.05
NUP54-218ENST00000515460 GDF6Q6KF10 455 aaPredicted RBP8.48□□□□□ -1.05
NUP54-218ENST00000515460 CAPN12Q6ZSI9 719 aa8.48□□□□□ -1.05
NUP54-218ENST00000515460 C14orf37Q86TY3 774 aa8.48□□□□□ -1.05
NUP54-218ENST00000515460 ETFBKMTQ8IXQ9 262 aa8.48□□□□□ -1.05
NUP54-218ENST00000515460 WFDC12Q8WWY7 111 aa8.48□□□□□ -1.05
NUP54-218ENST00000515460 PLD4Q96BZ4 506 aa8.48□□□□□ -1.05
NUP54-218ENST00000515460 KCNMB2Q9Y691 235 aa8.48□□□□□ -1.05
NUP54-218ENST00000515460 LOC102724428A0A0B4J2F2 783 aa8.47□□□□□ -1.05
NUP54-218ENST00000515460 ARID3CA6NKF2 412 aa8.47□□□□□ -1.05
NUP54-218ENST00000515460 GHRHP01286 108 aa8.47□□□□□ -1.05
NUP54-218ENST00000515460 SIK1P57059 783 aa8.47□□□□□ -1.05
NUP54-218ENST00000515460 TTC9Q92623 222 aa8.47□□□□□ -1.05
NUP54-218ENST00000515460 DEAF1O75398 565 aaPredicted RBP8.46□□□□□ -1.06
NUP54-218ENST00000515460 BRD2P25440 801 aaKnown RBP8.46□□□□□ -1.06
NUP54-218ENST00000515460 SRPK2P78362 688 aaKnown RBP8.46□□□□□ -1.06
NUP54-218ENST00000515460 OCLNQ16625 522 aa8.46□□□□□ -1.06
NUP54-218ENST00000515460 C16orf46Q6P387 395 aa8.46□□□□□ -1.06
NUP54-218ENST00000515460 PTPRKQ15262 1439 aa8.46□□□□□ -1.06
NUP54-218ENST00000515460 NOS3P29474 1203 aa8.45□□□□□ -1.06
NUP54-218ENST00000515460 FAM26DQ5JW98 314 aa8.45□□□□□ -1.06
NUP54-218ENST00000515460 IGF2-ASQ6U949 168 aa8.45□□□□□ -1.06
NUP54-218ENST00000515460 IL22RA1Q8N6P7 574 aa8.45□□□□□ -1.06
NUP54-218ENST00000515460 SSBP4Q9BWG4 385 aaPredicted RBP8.45□□□□□ -1.06
NUP54-218ENST00000515460 RBSNQ9H1K0 784 aa8.44□□□□□ -1.06
NUP54-218ENST00000515460 ZFP64Q9NPA5 681 aa8.44□□□□□ -1.06
NUP54-218ENST00000515460 CARMIL2Q6F5E8 1435 aa8.44□□□□□ -1.06
NUP54-218ENST00000515460 TRIP4Q15650 581 aaPredicted RBP8.43□□□□□ -1.06
NUP54-218ENST00000515460 ARTNQ5T4W7 220 aa8.43□□□□□ -1.06
NUP54-218ENST00000515460 TMEM164Q5U3C3 297 aa8.43□□□□□ -1.06
NUP54-218ENST00000515460 NLRP13Q86W25 1043 aa8.43□□□□□ -1.06
NUP54-218ENST00000515460 LRRC7Q96NW7 1537 aa8.43□□□□□ -1.06
NUP54-218ENST00000515460 ARHGEF12Q9NZN5 1544 aa8.43□□□□□ -1.06
NUP54-218ENST00000515460 PTCD1O75127 700 aaKnown RBP8.42□□□□□ -1.06
NUP54-218ENST00000515460 ALX3O95076 343 aa8.42□□□□□ -1.06
NUP54-218ENST00000515460 CCDC82Q8N4S0 544 aa8.42□□□□□ -1.06
NUP54-218ENST00000515460 PIK3R5Q8WYR1 880 aa8.42□□□□□ -1.06
NUP54-218ENST00000515460 CLP1Q92989 425 aaKnown RBP8.42□□□□□ -1.06
NUP54-218ENST00000515460 COL26A1Q96A83 441 aa8.42□□□□□ -1.06
NUP54-218ENST00000515460 CXXC1Q9P0U4 656 aaPredicted RBP8.42□□□□□ -1.06
NUP54-218ENST00000515460 DISP1Q96F81 1524 aa8.41□□□□□ -1.06
NUP54-218ENST00000515460 AKNAQ7Z591 1439 aa8.41□□□□□ -1.06
NUP54-218ENST00000515460 DLL1O00548 723 aa8.41□□□□□ -1.06
NUP54-218ENST00000515460 TNFRSF10BO14763 440 aa8.41□□□□□ -1.06
NUP54-218ENST00000515460 MEGF10Q96KG7 1140 aa8.41□□□□□ -1.06
NUP54-218ENST00000515460 TRIM33Q9UPN9 1127 aa8.41□□□□□ -1.06
NUP54-218ENST00000515460 RXRBP28702 533 aa8.4□□□□□ -1.06
NUP54-218ENST00000515460 SOX18P35713 384 aa8.4□□□□□ -1.06
NUP54-218ENST00000515460 NBPF11Q86T75 865 aa8.4□□□□□ -1.06
NUP54-218ENST00000515460 GPR152Q8TDT2 470 aa8.4□□□□□ -1.06
NUP54-218ENST00000515460 AKTIPQ9H8T0 292 aa8.4□□□□□ -1.06
NUP54-218ENST00000515460 PPP1R15AO75807 674 aaPredicted RBP8.39□□□□□ -1.07
NUP54-218ENST00000515460 ZAP70P43403 619 aa8.39□□□□□ -1.07
NUP54-218ENST00000515460 COL13A1Q5TAT6 717 aaPredicted RBP8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms