RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 PUM3Q15397 648 aaKnown RBP17.69■□□□□ 0.42
NUP54-216ENST00000514901 L3MBTL3Q96JM7 780 aaPredicted RBP17.69■□□□□ 0.42
NUP54-216ENST00000514901 SNAP23O00161 211 aa17.68■□□□□ 0.42
NUP54-216ENST00000514901 IFIT1P09914 478 aaKnown RBP17.68■□□□□ 0.42
NUP54-216ENST00000514901 VEGFAP15692 232 aaPredicted RBP17.68■□□□□ 0.42
NUP54-216ENST00000514901 ZNF804AQ7Z570 1209 aa17.68■□□□□ 0.42
NUP54-216ENST00000514901 TXNRD3Q86VQ6 643 aa17.68■□□□□ 0.42
NUP54-216ENST00000514901 NOP58Q9Y2X3 529 aaKnown RBP17.68■□□□□ 0.42
NUP54-216ENST00000514901 SUPT16HQ9Y5B9 1047 aaKnown RBP17.68■□□□□ 0.42
NUP54-216ENST00000514901 GJA3Q9Y6H8 435 aa17.68■□□□□ 0.42
NUP54-216ENST00000514901 IRS2Q9Y4H2 1338 aa17.68■□□□□ 0.42
NUP54-216ENST00000514901 IQCA1LA6NCM1 817 aa17.67■□□□□ 0.42
NUP54-216ENST00000514901 SURF6O75683 361 aaKnown RBP17.67■□□□□ 0.42
NUP54-216ENST00000514901 RAD17O75943 681 aa17.67■□□□□ 0.42
NUP54-216ENST00000514901 SLC5A1P13866 664 aa17.67■□□□□ 0.42
NUP54-216ENST00000514901 AAMPQ13685 434 aa17.67■□□□□ 0.42
NUP54-216ENST00000514901 LPIN2Q92539 896 aa17.67■□□□□ 0.42
NUP54-216ENST00000514901 RRAGCQ9HB90 399 aa17.67■□□□□ 0.42
NUP54-216ENST00000514901 AKAP2Q9Y2D5 859 aa17.67■□□□□ 0.42
NUP54-216ENST00000514901 FGFR2P21802 821 aa17.66■□□□□ 0.42
NUP54-216ENST00000514901 KLRK1P26718 216 aa17.66■□□□□ 0.42
NUP54-216ENST00000514901 HSP90AB4PQ58FF6 505 aa17.66■□□□□ 0.42
NUP54-216ENST00000514901 CAVIN4Q5BKX8 364 aa17.66■□□□□ 0.42
NUP54-216ENST00000514901 CD209Q9NNX6 404 aa17.66■□□□□ 0.42
NUP54-216ENST00000514901 USP17L3A6NCW0 530 aa17.65■□□□□ 0.42
NUP54-216ENST00000514901 USP17L4A6NCW7 530 aa17.65■□□□□ 0.42
NUP54-216ENST00000514901 VIL1P09327 827 aaKnown RBP17.65■□□□□ 0.42
NUP54-216ENST00000514901 IL1R1P14778 569 aa17.65■□□□□ 0.42
NUP54-216ENST00000514901 RPS12P25398 132 aaKnown RBP17.65■□□□□ 0.42
NUP54-216ENST00000514901 HIBADHP31937 336 aaKnown RBP17.65■□□□□ 0.42
NUP54-216ENST00000514901 OS9Q13438 667 aaPredicted RBP17.65■□□□□ 0.42
NUP54-216ENST00000514901 ATP2B3Q16720 1220 aa17.65■□□□□ 0.42
NUP54-216ENST00000514901 USP17L1Q7RTZ2 530 aa17.65■□□□□ 0.42
NUP54-216ENST00000514901 VPS37DQ86XT2 251 aa17.65■□□□□ 0.42
NUP54-216ENST00000514901 FAM84BQ96KN1 310 aaPredicted RBP17.65■□□□□ 0.42
NUP54-216ENST00000514901 NMRK2Q9NPI5 230 aa17.65■□□□□ 0.42
NUP54-216ENST00000514901 A0A1B0GUL6 1792 aa17.64■□□□□ 0.41
NUP54-216ENST00000514901 PSMD14O00487 310 aa17.64■□□□□ 0.41
NUP54-216ENST00000514901 LMOD1P29536 600 aaPredicted RBP17.64■□□□□ 0.41
NUP54-216ENST00000514901 STRIP1Q5VSL9 837 aa17.64■□□□□ 0.41
NUP54-216ENST00000514901 FBXO33Q7Z6M2 555 aa17.64■□□□□ 0.41
NUP54-216ENST00000514901 ERC1Q8IUD2 1116 aa17.64■□□□□ 0.41
NUP54-216ENST00000514901 DPF2Q92785 391 aa17.64■□□□□ 0.41
NUP54-216ENST00000514901 CRBNQ96SW2 442 aa17.64■□□□□ 0.41
NUP54-216ENST00000514901 WDR90Q96KV7 1748 aa17.64■□□□□ 0.41
NUP54-216ENST00000514901 POTECB2RU33 542 aa17.63■□□□□ 0.41
NUP54-216ENST00000514901 TFCP2Q12800 502 aa17.63■□□□□ 0.41
NUP54-216ENST00000514901 TTLL5Q6EMB2 1281 aa17.63■□□□□ 0.41
NUP54-216ENST00000514901 SIRT2Q8IXJ6 389 aa17.63■□□□□ 0.41
NUP54-216ENST00000514901 KCNQ5Q9NR82 932 aa17.63■□□□□ 0.41
NUP54-216ENST00000514901 HACL1Q9UJ83 578 aa17.63■□□□□ 0.41
NUP54-216ENST00000514901 KIF3CO14782 793 aa17.62■□□□□ 0.41
NUP54-216ENST00000514901 SASH1O94885 1247 aa17.62■□□□□ 0.41
NUP54-216ENST00000514901 GYG1P46976 350 aa17.62■□□□□ 0.41
NUP54-216ENST00000514901 GMPSP49915 693 aaPredicted RBP17.62■□□□□ 0.41
NUP54-216ENST00000514901 RSBN1LQ6PCB5 846 aaPredicted RBP17.62■□□□□ 0.41
NUP54-216ENST00000514901 C16orf71Q8IYS4 520 aaPredicted RBP17.62■□□□□ 0.41
NUP54-216ENST00000514901 AGBL3Q8NEM8 1001 aa17.62■□□□□ 0.41
NUP54-216ENST00000514901 TDRD7Q8NHU6 1098 aaKnown RBP17.62■□□□□ 0.41
NUP54-216ENST00000514901 GPR108Q9NPR9 543 aa17.62■□□□□ 0.41
NUP54-216ENST00000514901 MMP14P50281 582 aa17.61■□□□□ 0.41
NUP54-216ENST00000514901 SCNN1DP51172 638 aa17.61■□□□□ 0.41
NUP54-216ENST00000514901 GNL3LQ9NVN8 582 aaKnown RBP17.61■□□□□ 0.41
NUP54-216ENST00000514901 GPRC5DQ9NZD1 345 aa17.61■□□□□ 0.41
NUP54-216ENST00000514901 MYO3BQ8WXR4 1341 aa17.61■□□□□ 0.41
NUP54-216ENST00000514901 SCN4AP35499 1836 aa17.61■□□□□ 0.41
NUP54-216ENST00000514901 SCN9AQ15858 1988 aa17.6■□□□□ 0.41
NUP54-216ENST00000514901 H7C1D1 291 aa17.6■□□□□ 0.41
NUP54-216ENST00000514901 RAB11FIP3O75154 756 aa17.6■□□□□ 0.41
NUP54-216ENST00000514901 TIMM10P62072 90 aa17.6■□□□□ 0.41
NUP54-216ENST00000514901 FKBP1AP62942 108 aaKnown RBP17.6■□□□□ 0.41
NUP54-216ENST00000514901 GTF2IP78347 998 aa17.6■□□□□ 0.41
NUP54-216ENST00000514901 DACT2Q5SW24 774 aa17.6■□□□□ 0.41
NUP54-216ENST00000514901 PNMA8AQ86V59 439 aaPredicted RBP17.6■□□□□ 0.41
NUP54-216ENST00000514901 TAF1DQ9H5J8 278 aaPredicted RBP17.6■□□□□ 0.41
NUP54-216ENST00000514901 ZNF609O15014 1411 aa17.59■□□□□ 0.41
NUP54-216ENST00000514901 A0A1B0GUL7 405 aa17.59■□□□□ 0.41
NUP54-216ENST00000514901 ZBTB22O15209 634 aa17.59■□□□□ 0.41
NUP54-216ENST00000514901 FRAT2O75474 233 aaPredicted RBP17.59■□□□□ 0.41
NUP54-216ENST00000514901 TOMM70O94826 608 aa17.59■□□□□ 0.41
NUP54-216ENST00000514901 EPHX2P34913 555 aa17.59■□□□□ 0.41
NUP54-216ENST00000514901 BCAMP50895 628 aa17.59■□□□□ 0.41
NUP54-216ENST00000514901 FBXW7Q969H0 707 aa17.59■□□□□ 0.41
NUP54-216ENST00000514901 CNOT7Q9UIV1 285 aaKnown RBP17.59■□□□□ 0.41
NUP54-216ENST00000514901 ZBTB12Q9Y330 459 aaPredicted RBP17.59■□□□□ 0.41
NUP54-216ENST00000514901 FAM205AQ6ZU69 1335 aa17.58■□□□□ 0.4
NUP54-216ENST00000514901 EPS15P42566 896 aa17.58■□□□□ 0.4
NUP54-216ENST00000514901 USP50Q70EL3 339 aaPredicted RBP17.58■□□□□ 0.4
NUP54-216ENST00000514901 XAGE2Q96GT9 111 aa17.58■□□□□ 0.4
NUP54-216ENST00000514901 NEUROD6Q96NK8 337 aa17.58■□□□□ 0.4
NUP54-216ENST00000514901 GMLQ99445 158 aa17.58■□□□□ 0.4
NUP54-216ENST00000514901 ADARB2Q9NS39 739 aaKnown RBP17.58■□□□□ 0.4
NUP54-216ENST00000514901 EXOC6BQ9Y2D4 811 aa17.58■□□□□ 0.4
NUP54-216ENST00000514901 SEMA3EO15041 775 aa17.57■□□□□ 0.4
NUP54-216ENST00000514901 TNNI3KQ59H18 835 aa17.57■□□□□ 0.4
NUP54-216ENST00000514901 TBC1D22AQ8WUA7 517 aa17.57■□□□□ 0.4
NUP54-216ENST00000514901 KIF1BPQ96EK5 621 aa17.57■□□□□ 0.4
NUP54-216ENST00000514901 PCDHB15Q9Y5E8 787 aa17.57■□□□□ 0.4
NUP54-216ENST00000514901 FPGT-TNNI3KV9GXZ4 949 aa17.57■□□□□ 0.4
NUP54-216ENST00000514901 PSME4Q14997 1843 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms