RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 BCL11AQ9H165 835 aa12.17□□□□□ -0.46
TOPBP1-209ENST00000513818 CHMP4BQ9H444 224 aaKnown RBP12.17□□□□□ -0.46
TOPBP1-209ENST00000513818 PODXL2Q9NZ53 605 aa12.17□□□□□ -0.46
TOPBP1-209ENST00000513818 ARAP2Q8WZ64 1704 aa12.17□□□□□ -0.46
TOPBP1-209ENST00000513818 ZNF804BA4D1E1 1349 aa12.16□□□□□ -0.46
TOPBP1-209ENST00000513818 MROH5Q6ZUA9 1318 aa12.16□□□□□ -0.46
TOPBP1-209ENST00000513818 CIAO1O76071 339 aa12.16□□□□□ -0.46
TOPBP1-209ENST00000513818 ATP2B4P23634 1241 aa12.16□□□□□ -0.46
TOPBP1-209ENST00000513818 TFCP2Q12800 502 aa12.16□□□□□ -0.46
TOPBP1-209ENST00000513818 OS9Q13438 667 aaPredicted RBP12.16□□□□□ -0.46
TOPBP1-209ENST00000513818 DOK7Q18PE1 504 aa12.16□□□□□ -0.46
TOPBP1-209ENST00000513818 LARGE2Q8N3Y3 721 aa12.16□□□□□ -0.46
TOPBP1-209ENST00000513818 DBNDD1Q9H9R9 158 aa12.16□□□□□ -0.46
TOPBP1-209ENST00000513818 ZNF609O15014 1411 aa12.15□□□□□ -0.46
TOPBP1-209ENST00000513818 SASH1O94885 1247 aa12.15□□□□□ -0.46
TOPBP1-209ENST00000513818 IL15P40933 162 aaPredicted RBP12.15□□□□□ -0.46
TOPBP1-209ENST00000513818 G3BP1Q13283 466 aaKnown RBP eCLIP12.15□□□□□ -0.46
TOPBP1-209ENST00000513818 WASHC4Q2M389 1173 aa12.15□□□□□ -0.46
TOPBP1-209ENST00000513818 RPAP2Q8IXW5 612 aaPredicted RBP12.15□□□□□ -0.46
TOPBP1-209ENST00000513818 SUPT20HQ8NEM7 779 aa12.15□□□□□ -0.46
TOPBP1-209ENST00000513818 SCN9AQ15858 1988 aa12.15□□□□□ -0.46
TOPBP1-209ENST00000513818 MED23Q9ULK4 1368 aa12.15□□□□□ -0.46
TOPBP1-209ENST00000513818 ZNF541Q9H0D2 1346 aa12.14□□□□□ -0.47
TOPBP1-209ENST00000513818 IRS2Q9Y4H2 1338 aa12.14□□□□□ -0.47
TOPBP1-209ENST00000513818 HMMRO75330 724 aa12.14□□□□□ -0.47
TOPBP1-209ENST00000513818 PDE8BO95263 885 aa12.14□□□□□ -0.47
TOPBP1-209ENST00000513818 ADORA1P30542 326 aa12.14□□□□□ -0.47
TOPBP1-209ENST00000513818 KIAA2012Q0VF49 1180 aa12.14□□□□□ -0.47
TOPBP1-209ENST00000513818 MKRN4PQ13434 485 aaPredicted RBP12.14□□□□□ -0.47
TOPBP1-209ENST00000513818 NIM1KQ8IY84 436 aa12.14□□□□□ -0.47
TOPBP1-209ENST00000513818 EYA3Q99504 573 aa12.14□□□□□ -0.47
TOPBP1-209ENST00000513818 LEMD3Q9Y2U8 911 aa12.14□□□□□ -0.47
TOPBP1-209ENST00000513818 ZNF646O15015 1829 aaPredicted RBP12.14□□□□□ -0.47
TOPBP1-209ENST00000513818 YDJCA8MPS7 323 aa12.13□□□□□ -0.47
TOPBP1-209ENST00000513818 ECE2O60344 883 aa12.13□□□□□ -0.47
TOPBP1-209ENST00000513818 GYG1P46976 350 aa12.13□□□□□ -0.47
TOPBP1-209ENST00000513818 PUM3Q15397 648 aaKnown RBP12.13□□□□□ -0.47
TOPBP1-209ENST00000513818 ATP2B3Q16720 1220 aa12.13□□□□□ -0.47
TOPBP1-209ENST00000513818 GRIPAP1Q4V328 841 aa12.13□□□□□ -0.47
TOPBP1-209ENST00000513818 ZNF526Q8TF50 670 aaPredicted RBP12.13□□□□□ -0.47
TOPBP1-209ENST00000513818 ZC3H12CQ9C0D7 883 aaKnown RBP12.13□□□□□ -0.47
TOPBP1-209ENST00000513818 IL1RAPL2Q9NP60 686 aa12.13□□□□□ -0.47
TOPBP1-209ENST00000513818 CEP126Q9P2H0 1117 aa12.13□□□□□ -0.47
TOPBP1-209ENST00000513818 JAG2Q9Y219 1238 aa12.13□□□□□ -0.47
TOPBP1-209ENST00000513818 NOP58Q9Y2X3 529 aaKnown RBP12.13□□□□□ -0.47
TOPBP1-209ENST00000513818 SMARCA5O60264 1052 aaPredicted RBP12.12□□□□□ -0.47
TOPBP1-209ENST00000513818 FGFR2P21802 821 aa12.12□□□□□ -0.47
TOPBP1-209ENST00000513818 KCNQ5Q9NR82 932 aa12.12□□□□□ -0.47
TOPBP1-209ENST00000513818 TLR7Q9NYK1 1049 aaKnown RBP12.12□□□□□ -0.47
TOPBP1-209ENST00000513818 IQSEC3Q9UPP2 1182 aaPredicted RBP12.12□□□□□ -0.47
TOPBP1-209ENST00000513818 MYH13Q9UKX3 1938 aa12.11□□□□□ -0.47
TOPBP1-209ENST00000513818 COL1A1P02452 1464 aaPredicted RBP12.11□□□□□ -0.47
TOPBP1-209ENST00000513818 A0A1B0GUL7 405 aa12.11□□□□□ -0.47
TOPBP1-209ENST00000513818 G3V3G9 751 aa12.11□□□□□ -0.47
TOPBP1-209ENST00000513818 RAD17O75943 681 aa12.11□□□□□ -0.47
TOPBP1-209ENST00000513818 SLC5A1P13866 664 aa12.11□□□□□ -0.47
TOPBP1-209ENST00000513818 TIMM10P62072 90 aa12.11□□□□□ -0.47
TOPBP1-209ENST00000513818 UBE4AQ14139 1066 aa12.11□□□□□ -0.47
TOPBP1-209ENST00000513818 TMEM132AQ24JP5 1023 aa12.11□□□□□ -0.47
TOPBP1-209ENST00000513818 DCAF8Q5TAQ9 597 aa12.11□□□□□ -0.47
TOPBP1-209ENST00000513818 JDP2Q8WYK2 163 aa12.11□□□□□ -0.47
TOPBP1-209ENST00000513818 FBXW7Q969H0 707 aa12.11□□□□□ -0.47
TOPBP1-209ENST00000513818 GJA3Q9Y6H8 435 aa12.11□□□□□ -0.47
TOPBP1-209ENST00000513818 PSME4Q14997 1843 aa12.11□□□□□ -0.47
TOPBP1-209ENST00000513818 NEFLP07196 543 aa12.1□□□□□ -0.47
TOPBP1-209ENST00000513818 NBR1Q14596 966 aa12.1□□□□□ -0.47
TOPBP1-209ENST00000513818 TNNI3KQ59H18 835 aa12.1□□□□□ -0.47
TOPBP1-209ENST00000513818 LPIN2Q92539 896 aa12.1□□□□□ -0.47
TOPBP1-209ENST00000513818 NEUROD6Q96NK8 337 aa12.1□□□□□ -0.47
TOPBP1-209ENST00000513818 MXD3Q9BW11 206 aa12.1□□□□□ -0.47
TOPBP1-209ENST00000513818 FPGT-TNNI3KV9GXZ4 949 aa12.1□□□□□ -0.47
TOPBP1-209ENST00000513818 FZD9O00144 591 aa12.09□□□□□ -0.47
TOPBP1-209ENST00000513818 DDNO94850 711 aaPredicted RBP12.09□□□□□ -0.47
TOPBP1-209ENST00000513818 IGHDP01880 384 aa12.09□□□□□ -0.47
TOPBP1-209ENST00000513818 IFIT1P09914 478 aaKnown RBP12.09□□□□□ -0.47
TOPBP1-209ENST00000513818 YY1P25490 414 aa12.09□□□□□ -0.47
TOPBP1-209ENST00000513818 PHKA1P46020 1223 aa12.09□□□□□ -0.47
TOPBP1-209ENST00000513818 BCAMP50895 628 aa12.09□□□□□ -0.47
TOPBP1-209ENST00000513818 CXCL9Q07325 125 aa12.09□□□□□ -0.47
TOPBP1-209ENST00000513818 ZNF804AQ7Z570 1209 aa12.09□□□□□ -0.47
TOPBP1-209ENST00000513818 RHPN1Q8TCX5 695 aa12.09□□□□□ -0.47
TOPBP1-209ENST00000513818 XAGE2Q96GT9 111 aa12.09□□□□□ -0.47
TOPBP1-209ENST00000513818 FAM84BQ96KN1 310 aaPredicted RBP12.09□□□□□ -0.47
TOPBP1-209ENST00000513818 DBNDD2Q9BQY9 259 aa12.09□□□□□ -0.47
TOPBP1-209ENST00000513818 CCDC8Q9H0W5 538 aaPredicted RBP12.09□□□□□ -0.47
TOPBP1-209ENST00000513818 CD209Q9NNX6 404 aa12.09□□□□□ -0.47
TOPBP1-209ENST00000513818 ZNRF3Q9ULT6 936 aa12.09□□□□□ -0.47
TOPBP1-209ENST00000513818 HIBADHP31937 336 aaKnown RBP12.08□□□□□ -0.48
TOPBP1-209ENST00000513818 EIF6P56537 245 aaKnown RBP12.08□□□□□ -0.48
TOPBP1-209ENST00000513818 CHAF1AQ13111 956 aaPredicted RBP12.08□□□□□ -0.48
TOPBP1-209ENST00000513818 C15orf52Q6ZUT6 534 aaKnown RBP12.08□□□□□ -0.48
TOPBP1-209ENST00000513818 AACSQ86V21 672 aa12.08□□□□□ -0.48
TOPBP1-209ENST00000513818 ERC1Q8IUD2 1116 aa12.08□□□□□ -0.48
TOPBP1-209ENST00000513818 EAF2Q96CJ1 260 aaPredicted RBP12.08□□□□□ -0.48
TOPBP1-209ENST00000513818 KIF1BPQ96EK5 621 aa12.08□□□□□ -0.48
TOPBP1-209ENST00000513818 VPS33BQ9H267 617 aa12.08□□□□□ -0.48
TOPBP1-209ENST00000513818 DCTPP1Q9H773 170 aa12.08□□□□□ -0.48
TOPBP1-209ENST00000513818 DBNLQ9UJU6 430 aaKnown RBP12.08□□□□□ -0.48
TOPBP1-209ENST00000513818 ADAMTSL1Q8N6G6 1762 aa12.07□□□□□ -0.48
TOPBP1-209ENST00000513818 SHTN1A0MZ66 631 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms