RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 TAF5LO75529 589 aa8.84□□□□□ -0.99
NUP54-204ENST00000506098 PDE1AP54750 535 aa8.84□□□□□ -0.99
NUP54-204ENST00000506098 TIMM10P62072 90 aa8.84□□□□□ -0.99
NUP54-204ENST00000506098 ATP2B3Q16720 1220 aa8.84□□□□□ -0.99
NUP54-204ENST00000506098 AACSQ86V21 672 aa8.84□□□□□ -0.99
NUP54-204ENST00000506098 HELBQ8NG08 1087 aaPredicted RBP8.84□□□□□ -0.99
NUP54-204ENST00000506098 LPIN2Q92539 896 aa8.84□□□□□ -0.99
NUP54-204ENST00000506098 DBNLQ9UJU6 430 aaKnown RBP8.84□□□□□ -0.99
NUP54-204ENST00000506098 IFIT2P09913 472 aaKnown RBP8.83□□□□□ -1
NUP54-204ENST00000506098 SLC5A1P13866 664 aa8.83□□□□□ -1
NUP54-204ENST00000506098 MX1P20591 662 aa8.83□□□□□ -1
NUP54-204ENST00000506098 ATP2B4P23634 1241 aa8.83□□□□□ -1
NUP54-204ENST00000506098 GPSM2P81274 684 aa8.83□□□□□ -1
NUP54-204ENST00000506098 OTUD7AQ8TE49 926 aaPredicted RBP8.83□□□□□ -1
NUP54-204ENST00000506098 XAGE2Q96GT9 111 aa8.83□□□□□ -1
NUP54-204ENST00000506098 ZNF512BQ96KM6 892 aaPredicted RBP8.83□□□□□ -1
NUP54-204ENST00000506098 RTFDC1Q9BY42 306 aaPredicted RBP8.83□□□□□ -1
NUP54-204ENST00000506098 CCDC8Q9H0W5 538 aaPredicted RBP8.83□□□□□ -1
NUP54-204ENST00000506098 ZNF804BA4D1E1 1349 aa8.82□□□□□ -1
NUP54-204ENST00000506098 IFIT1P09914 478 aaKnown RBP8.82□□□□□ -1
NUP54-204ENST00000506098 SOGA3Q5TF21 947 aa8.82□□□□□ -1
NUP54-204ENST00000506098 SLC51AQ86UW1 340 aa8.82□□□□□ -1
NUP54-204ENST00000506098 SKAP1Q86WV1 359 aa8.82□□□□□ -1
NUP54-204ENST00000506098 MPNDQ8N594 471 aa8.82□□□□□ -1
NUP54-204ENST00000506098 PI4K2BQ8TCG2 481 aa8.82□□□□□ -1
NUP54-204ENST00000506098 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.82□□□□□ -1
NUP54-204ENST00000506098 NEUROD6Q96NK8 337 aa8.82□□□□□ -1
NUP54-204ENST00000506098 DBNDD2Q9BQY9 259 aa8.82□□□□□ -1
NUP54-204ENST00000506098 FHDC1Q9C0D6 1143 aaPredicted RBP8.82□□□□□ -1
NUP54-204ENST00000506098 ECHDC1Q9NTX5 307 aa8.82□□□□□ -1
NUP54-204ENST00000506098 TLR7Q9NYK1 1049 aaKnown RBP8.82□□□□□ -1
NUP54-204ENST00000506098 ANKIB1Q9P2G1 1089 aa8.82□□□□□ -1
NUP54-204ENST00000506098 NSFL1CQ9UNZ2 370 aaKnown RBP8.82□□□□□ -1
NUP54-204ENST00000506098 POLR2AP24928 1970 aaKnown RBP8.82□□□□□ -1
NUP54-204ENST00000506098 MED23Q9ULK4 1368 aa8.82□□□□□ -1
NUP54-204ENST00000506098 TIAM2Q8IVF5 1701 aa8.82□□□□□ -1
NUP54-204ENST00000506098 WTIPA6NIX2 430 aaPredicted RBP8.81□□□□□ -1
NUP54-204ENST00000506098 SNAP23O00161 211 aa8.81□□□□□ -1
NUP54-204ENST00000506098 ERC2O15083 957 aa8.81□□□□□ -1
NUP54-204ENST00000506098 ATP5JP18859 108 aa8.81□□□□□ -1
NUP54-204ENST00000506098 ARID4AP29374 1257 aaPredicted RBP8.81□□□□□ -1
NUP54-204ENST00000506098 ADORA1P30542 326 aa8.81□□□□□ -1
NUP54-204ENST00000506098 RGS3P49796 1198 aa8.81□□□□□ -1
NUP54-204ENST00000506098 DALRD3Q5D0E6 543 aaKnown RBP8.81□□□□□ -1
NUP54-204ENST00000506098 OLFM4Q6UX06 510 aa8.81□□□□□ -1
NUP54-204ENST00000506098 FBXO33Q7Z6M2 555 aa8.81□□□□□ -1
NUP54-204ENST00000506098 RTKN2Q8IZC4 609 aa8.81□□□□□ -1
NUP54-204ENST00000506098 NLGN2Q8NFZ4 835 aa8.81□□□□□ -1
NUP54-204ENST00000506098 TBC1D16Q8TBP0 767 aa8.81□□□□□ -1
NUP54-204ENST00000506098 GPATCH3Q96I76 525 aa8.81□□□□□ -1
NUP54-204ENST00000506098 FAM84BQ96KN1 310 aaPredicted RBP8.81□□□□□ -1
NUP54-204ENST00000506098 SYT17Q9BSW7 474 aa8.81□□□□□ -1
NUP54-204ENST00000506098 TMX4Q9H1E5 349 aaPredicted RBP8.81□□□□□ -1
NUP54-204ENST00000506098 VPS33BQ9H267 617 aa8.81□□□□□ -1
NUP54-204ENST00000506098 POLLQ9UGP5 575 aa8.81□□□□□ -1
NUP54-204ENST00000506098 GGA1Q9UJY5 639 aa8.81□□□□□ -1
NUP54-204ENST00000506098 MYH1P12882 1939 aa8.8□□□□□ -1
NUP54-204ENST00000506098 BAZ2AQ9UIF9 1905 aaKnown RBP8.8□□□□□ -1
NUP54-204ENST00000506098 C21orf2O43822 256 aa8.8□□□□□ -1
NUP54-204ENST00000506098 GLRX3O76003 335 aaKnown RBP8.8□□□□□ -1
NUP54-204ENST00000506098 UQCRFS1P1P0C7P4 283 aa8.8□□□□□ -1
NUP54-204ENST00000506098 KCNJ4P48050 445 aa8.8□□□□□ -1
NUP54-204ENST00000506098 CCDC93Q567U6 631 aa8.8□□□□□ -1
NUP54-204ENST00000506098 CCDC158Q5M9N0 1113 aa8.8□□□□□ -1
NUP54-204ENST00000506098 TTC22Q5TAA0 569 aa8.8□□□□□ -1
NUP54-204ENST00000506098 CCDC102BQ68D86 513 aa8.8□□□□□ -1
NUP54-204ENST00000506098 DPP8Q6V1X1 898 aaPredicted RBP8.8□□□□□ -1
NUP54-204ENST00000506098 TXNRD3Q86VQ6 643 aa8.8□□□□□ -1
NUP54-204ENST00000506098 PSMD1Q99460 953 aa8.8□□□□□ -1
NUP54-204ENST00000506098 PPP1R1BQ9UD71 204 aaPredicted RBP8.8□□□□□ -1
NUP54-204ENST00000506098 MYH8P13535 1937 aa8.8□□□□□ -1
NUP54-204ENST00000506098 PDS5AQ29RF7 1337 aaKnown RBP8.8□□□□□ -1
NUP54-204ENST00000506098 LTBP3Q9NS15 1303 aa8.8□□□□□ -1
NUP54-204ENST00000506098 GOLGB1Q14789 3259 aaKnown RBP8.79□□□□□ -1
NUP54-204ENST00000506098 SEMA3EO15041 775 aa8.79□□□□□ -1
NUP54-204ENST00000506098 UFL1O94874 794 aa8.79□□□□□ -1
NUP54-204ENST00000506098 GSPT1P15170 499 aaKnown RBP8.79□□□□□ -1
NUP54-204ENST00000506098 PHKA1P46020 1223 aa8.79□□□□□ -1
NUP54-204ENST00000506098 CAVIN4Q5BKX8 364 aa8.79□□□□□ -1
NUP54-204ENST00000506098 BMP2KLQ5H9B9 411 aa8.79□□□□□ -1
NUP54-204ENST00000506098 TTC39AQ5SRH9 613 aa8.79□□□□□ -1
NUP54-204ENST00000506098 GORABQ5T7V8 394 aa8.79□□□□□ -1
NUP54-204ENST00000506098 TICAM2Q86XR7 235 aa8.79□□□□□ -1
NUP54-204ENST00000506098 KLHL34Q8N239 644 aa8.79□□□□□ -1
NUP54-204ENST00000506098 SUPT20HQ8NEM7 779 aa8.79□□□□□ -1
NUP54-204ENST00000506098 EYA3Q99504 573 aa8.79□□□□□ -1
NUP54-204ENST00000506098 HAUS7Q99871 368 aa8.79□□□□□ -1
NUP54-204ENST00000506098 LAMA4Q16363 1823 aa8.78□□□□□ -1
NUP54-204ENST00000506098 C6orf229H3BNL8 230 aa8.78□□□□□ -1
NUP54-204ENST00000506098 IL1R1P14778 569 aa8.78□□□□□ -1
NUP54-204ENST00000506098 KLRK1P26718 216 aa8.78□□□□□ -1
NUP54-204ENST00000506098 HIBADHP31937 336 aaKnown RBP8.78□□□□□ -1
NUP54-204ENST00000506098 MCAMP43121 646 aa8.78□□□□□ -1
NUP54-204ENST00000506098 GYG1P46976 350 aa8.78□□□□□ -1
NUP54-204ENST00000506098 BCAMP50895 628 aa8.78□□□□□ -1
NUP54-204ENST00000506098 FKBP4Q02790 459 aaKnown RBP eCLIP8.78□□□□□ -1
NUP54-204ENST00000506098 TSHZ3Q63HK5 1081 aa8.78□□□□□ -1
NUP54-204ENST00000506098 ZNF804AQ7Z570 1209 aa8.78□□□□□ -1
NUP54-204ENST00000506098 TDRD7Q8NHU6 1098 aaKnown RBP8.78□□□□□ -1
NUP54-204ENST00000506098 GNL3LQ9NVN8 582 aaKnown RBP8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 418.6 ms