RNA–Protein interactions for RNA: ENST00000496393.2

NVL-223, Transcript of nuclear VCP-like, human

TSL 3

Gene NVL, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NVL-223	ENST00000496393	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	10.28	□□□□□ -0.76
NVL-223	ENST00000496393	CHPF2	Q9P2E5	772 aa		10.28	□□□□□ -0.76
NVL-223	ENST00000496393	SCAF8	Q9UPN6	1271 aa	Known RBP	10.28	□□□□□ -0.76
NVL-223	ENST00000496393	SLC10A3	P09131	477 aa		10.27	□□□□□ -0.77
NVL-223	ENST00000496393	RIPK4	P57078	832 aa		10.27	□□□□□ -0.77
NVL-223	ENST00000496393	TMC4	Q7Z404	712 aa		10.27	□□□□□ -0.77
NVL-223	ENST00000496393	RASAL3	Q86YV0	1011 aa		10.27	□□□□□ -0.77
NVL-223	ENST00000496393	CSRNP1	Q96S65	589 aa		10.27	□□□□□ -0.77
NVL-223	ENST00000496393	RPS12	P25398	132 aa	Known RBP	10.26	□□□□□ -0.77
NVL-223	ENST00000496393	GSE1	Q14687	1217 aa		10.26	□□□□□ -0.77
NVL-223	ENST00000496393	ANGEL2	Q5VTE6	544 aa	Known RBP	10.26	□□□□□ -0.77
NVL-223	ENST00000496393	CTU1	Q7Z7A3	348 aa	Known RBP	10.26	□□□□□ -0.77
NVL-223	ENST00000496393	TBC1D16	Q8TBP0	767 aa		10.26	□□□□□ -0.77
NVL-223	ENST00000496393	MARVELD3	Q96A59	401 aa		10.26	□□□□□ -0.77
NVL-223	ENST00000496393	LAS1L	Q9Y4W2	734 aa	Known RBP	10.26	□□□□□ -0.77
NVL-223	ENST00000496393		G3V3G9	751 aa		10.25	□□□□□ -0.77
NVL-223	ENST00000496393	UFL1	O94874	794 aa		10.25	□□□□□ -0.77
NVL-223	ENST00000496393	NEUROD2	Q15784	382 aa		10.25	□□□□□ -0.77
NVL-223	ENST00000496393	MOB2	Q70IA6	237 aa		10.25	□□□□□ -0.77
NVL-223	ENST00000496393	EYA3	Q99504	573 aa		10.25	□□□□□ -0.77
NVL-223	ENST00000496393	HPS5	Q9UPZ3	1129 aa		10.25	□□□□□ -0.77
NVL-223	ENST00000496393	PAPPA2	Q9BXP8	1791 aa		10.24	□□□□□ -0.77
NVL-223	ENST00000496393	IRS4	O14654	1257 aa	Predicted RBP	10.24	□□□□□ -0.77
NVL-223	ENST00000496393	MKRN3	Q13064	507 aa	Known RBP	10.24	□□□□□ -0.77
NVL-223	ENST00000496393	SCARF1	Q14162	830 aa		10.24	□□□□□ -0.77
NVL-223	ENST00000496393	SF3B3	Q15393	1217 aa	Known RBP	10.24	□□□□□ -0.77
NVL-223	ENST00000496393	HDGFL1	Q5TGJ6	251 aa		10.24	□□□□□ -0.77
NVL-223	ENST00000496393	PRPF38B	Q5VTL8	546 aa	Known RBP	10.24	□□□□□ -0.77
NVL-223	ENST00000496393	PRAMEF18	Q5VWM3	479 aa		10.24	□□□□□ -0.77
NVL-223	ENST00000496393	CCDC146	Q8IYE0	955 aa		10.24	□□□□□ -0.77
NVL-223	ENST00000496393	CCDC85A	Q96PX6	553 aa	Predicted RBP	10.24	□□□□□ -0.77
NVL-223	ENST00000496393	ISCA1	Q9BUE6	129 aa		10.24	□□□□□ -0.77
NVL-223	ENST00000496393	ZC3H12C	Q9C0D7	883 aa	Known RBP	10.24	□□□□□ -0.77
NVL-223	ENST00000496393	PNN	Q9H307	717 aa	Known RBP	10.24	□□□□□ -0.77
NVL-223	ENST00000496393	SEC31B	Q9NQW1	1179 aa		10.24	□□□□□ -0.77
NVL-223	ENST00000496393	UBE2Q2L	H0YL09	131 aa		10.23	□□□□□ -0.77
NVL-223	ENST00000496393	TBC1D8	O95759	1140 aa		10.23	□□□□□ -0.77
NVL-223	ENST00000496393	VIL1	P09327	827 aa	Known RBP	10.23	□□□□□ -0.77
NVL-223	ENST00000496393	TMPO	P42166	694 aa	Known RBP	10.23	□□□□□ -0.77
NVL-223	ENST00000496393	ZNF467	Q7Z7K2	595 aa	Predicted RBP	10.23	□□□□□ -0.77
NVL-223	ENST00000496393	PLBD2	Q8NHP8	589 aa		10.23	□□□□□ -0.77
NVL-223	ENST00000496393	JARID2	Q92833	1246 aa	Predicted RBP	10.23	□□□□□ -0.77
NVL-223	ENST00000496393	ANKIB1	Q9P2G1	1089 aa		10.23	□□□□□ -0.77
NVL-223	ENST00000496393	HDAC9	Q9UKV0	1011 aa		10.23	□□□□□ -0.77
NVL-223	ENST00000496393	CHRM1	P11229	460 aa	Predicted RBP	10.22	□□□□□ -0.77
NVL-223	ENST00000496393	PSEN1	P49768	467 aa		10.22	□□□□□ -0.77
NVL-223	ENST00000496393	RPS8	P62241	208 aa	Known RBP	10.22	□□□□□ -0.77
NVL-223	ENST00000496393	LMOD3	Q0VAK6	560 aa		10.22	□□□□□ -0.77
NVL-223	ENST00000496393	TTLL12	Q14166	644 aa	Predicted RBP	10.22	□□□□□ -0.77
NVL-223	ENST00000496393	RSBN1L	Q6PCB5	846 aa	Predicted RBP	10.22	□□□□□ -0.77
NVL-223	ENST00000496393	ANKRD13D	Q6ZTN6	518 aa		10.22	□□□□□ -0.77
NVL-223	ENST00000496393	ZNF296	Q8WUU4	475 aa	Predicted RBP	10.22	□□□□□ -0.77
NVL-223	ENST00000496393	GGA1	Q9UJY5	639 aa		10.22	□□□□□ -0.77
NVL-223	ENST00000496393	ZNF280A	P59817	542 aa	Predicted RBP	10.21	□□□□□ -0.77
NVL-223	ENST00000496393	FBXW7	Q969H0	707 aa		10.21	□□□□□ -0.77
NVL-223	ENST00000496393	MXD3	Q9BW11	206 aa		10.21	□□□□□ -0.77
NVL-223	ENST00000496393	MYOZ2	Q9NPC6	264 aa		10.21	□□□□□ -0.77
NVL-223	ENST00000496393	BABAM1	Q9NWV8	329 aa		10.21	□□□□□ -0.77
NVL-223	ENST00000496393	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	10.21	□□□□□ -0.77
NVL-223	ENST00000496393	PSME4	Q14997	1843 aa		10.21	□□□□□ -0.78
NVL-223	ENST00000496393	CHL1	O00533	1208 aa		10.2	□□□□□ -0.78
NVL-223	ENST00000496393	USP17L8	P0C7I0	530 aa		10.2	□□□□□ -0.78
NVL-223	ENST00000496393	PRKG1	Q13976	671 aa		10.2	□□□□□ -0.78
NVL-223	ENST00000496393	SPEF2	Q9C093	1822 aa		10.19	□□□□□ -0.78
NVL-223	ENST00000496393	WTIP	A6NIX2	430 aa	Predicted RBP	10.19	□□□□□ -0.78
NVL-223	ENST00000496393	SNPH	O15079	494 aa		10.19	□□□□□ -0.78
NVL-223	ENST00000496393	SASH1	O94885	1247 aa		10.19	□□□□□ -0.78
NVL-223	ENST00000496393	GOLGA2	Q08379	1002 aa		10.19	□□□□□ -0.78
NVL-223	ENST00000496393	NBPF9	Q3BBW0	867 aa		10.19	□□□□□ -0.78
NVL-223	ENST00000496393	RIC3	Q7Z5B4	369 aa		10.19	□□□□□ -0.78
NVL-223	ENST00000496393	AGBL3	Q8NEM8	1001 aa		10.19	□□□□□ -0.78
NVL-223	ENST00000496393	MYD88	Q99836	296 aa		10.19	□□□□□ -0.78
NVL-223	ENST00000496393	PODXL2	Q9NZ53	605 aa		10.19	□□□□□ -0.78
NVL-223	ENST00000496393	DBF4	Q9UBU7	674 aa	Predicted RBP	10.19	□□□□□ -0.78
NVL-223	ENST00000496393	ZNF609	O15014	1411 aa		10.18	□□□□□ -0.78
NVL-223	ENST00000496393	XDH	P47989	1333 aa		10.18	□□□□□ -0.78
NVL-223	ENST00000496393	GPR25	O00155	361 aa		10.18	□□□□□ -0.78
NVL-223	ENST00000496393	FKBP1B	P68106	108 aa		10.18	□□□□□ -0.78
NVL-223	ENST00000496393	CCDC152	Q4G0S7	254 aa		10.18	□□□□□ -0.78
NVL-223	ENST00000496393	DUSP27	Q5VZP5	1158 aa		10.18	□□□□□ -0.78
NVL-223	ENST00000496393	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	10.18	□□□□□ -0.78
NVL-223	ENST00000496393	GML	Q99445	158 aa		10.18	□□□□□ -0.78
NVL-223	ENST00000496393	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	10.18	□□□□□ -0.78
NVL-223	ENST00000496393	R3HDML	Q9H3Y0	253 aa		10.18	□□□□□ -0.78
NVL-223	ENST00000496393	PHAX	Q9H814	394 aa	Known RBP	10.18	□□□□□ -0.78
NVL-223	ENST00000496393	HYPK	Q9NX55	129 aa		10.18	□□□□□ -0.78
NVL-223	ENST00000496393	PITPNM2	Q9BZ72	1349 aa		10.17	□□□□□ -0.78
NVL-223	ENST00000496393	USP17L3	A6NCW0	530 aa		10.17	□□□□□ -0.78
NVL-223	ENST00000496393	USP17L4	A6NCW7	530 aa		10.17	□□□□□ -0.78
NVL-223	ENST00000496393	PKN2	Q16513	984 aa	Known RBP	10.17	□□□□□ -0.78
NVL-223	ENST00000496393	FBXO46	Q6PJ61	603 aa	Predicted RBP	10.17	□□□□□ -0.78
NVL-223	ENST00000496393	USP17L1	Q7RTZ2	530 aa		10.17	□□□□□ -0.78
NVL-223	ENST00000496393	ANKRD18A	Q8IVF6	992 aa		10.17	□□□□□ -0.78
NVL-223	ENST00000496393	SPNS2	Q8IVW8	549 aa		10.17	□□□□□ -0.78
NVL-223	ENST00000496393	FZD1	Q9UP38	647 aa		10.17	□□□□□ -0.78
NVL-223	ENST00000496393	ZNF646	O15015	1829 aa	Predicted RBP	10.17	□□□□□ -0.78
NVL-223	ENST00000496393	ELL2	O00472	640 aa	Predicted RBP	10.16	□□□□□ -0.78
NVL-223	ENST00000496393	HOXB7	P09629	217 aa		10.16	□□□□□ -0.78
NVL-223	ENST00000496393	PTPN12	Q05209	780 aa	Known RBP	10.16	□□□□□ -0.78
NVL-223	ENST00000496393	MMRN1	Q13201	1228 aa		10.16	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms