RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 ST18O60284 1047 aa12.39□□□□□ -0.43
HDAC3-214ENST00000495485 ANAPC15P60006 121 aa12.39□□□□□ -0.43
HDAC3-214ENST00000495485 RPS8P62241 208 aaKnown RBP12.39□□□□□ -0.43
HDAC3-214ENST00000495485 GORABQ5T7V8 394 aa12.39□□□□□ -0.43
HDAC3-214ENST00000495485 TSHZ3Q63HK5 1081 aa12.39□□□□□ -0.43
HDAC3-214ENST00000495485 LDHAL6AQ6ZMR3 332 aa12.39□□□□□ -0.43
HDAC3-214ENST00000495485 SP8Q8IXZ3 490 aa12.39□□□□□ -0.43
HDAC3-214ENST00000495485 CCDC24Q8N4L8 307 aa12.39□□□□□ -0.43
HDAC3-214ENST00000495485 SUPT20HQ8NEM7 779 aa12.39□□□□□ -0.43
HDAC3-214ENST00000495485 C7orf43Q8WVR3 580 aa12.39□□□□□ -0.43
HDAC3-214ENST00000495485 NEUROD6Q96NK8 337 aa12.39□□□□□ -0.43
HDAC3-214ENST00000495485 PSMD1Q99460 953 aa12.39□□□□□ -0.43
HDAC3-214ENST00000495485 ATP6V0A2Q9Y487 856 aa12.39□□□□□ -0.43
HDAC3-214ENST00000495485 CCDC88AQ3V6T2 1871 aa12.39□□□□□ -0.43
HDAC3-214ENST00000495485 RAD50Q92878 1312 aa12.38□□□□□ -0.43
HDAC3-214ENST00000495485 PPEF1O14829 653 aaPredicted RBP12.38□□□□□ -0.43
HDAC3-214ENST00000495485 YBX3P16989 372 aaKnown RBP eCLIP12.38□□□□□ -0.432e-8■■□□□ 12.6
HDAC3-214ENST00000495485 ITGA6P23229 1130 aa12.38□□□□□ -0.43
HDAC3-214ENST00000495485 IGHMBP2P38935 993 aaKnown RBP12.38□□□□□ -0.43
HDAC3-214ENST00000495485 ATG9AQ7Z3C6 839 aa12.38□□□□□ -0.43
HDAC3-214ENST00000495485 ANKRD18AQ8IVF6 992 aa12.38□□□□□ -0.43
HDAC3-214ENST00000495485 SYNE4Q8N205 404 aa12.38□□□□□ -0.43
HDAC3-214ENST00000495485 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.38□□□□□ -0.43
HDAC3-214ENST00000495485 ANO2Q9NQ90 1003 aa12.38□□□□□ -0.43
HDAC3-214ENST00000495485 CNNM1Q9NRU3 951 aa12.38□□□□□ -0.43
HDAC3-214ENST00000495485 RFX7Q2KHR2 1363 aa12.38□□□□□ -0.43
HDAC3-214ENST00000495485 MROH5Q6ZUA9 1318 aa12.37□□□□□ -0.43
HDAC3-214ENST00000495485 METTL24Q5JXM2 366 aa12.37□□□□□ -0.43
HDAC3-214ENST00000495485 MPHOSPH8Q99549 860 aa12.37□□□□□ -0.43
HDAC3-214ENST00000495485 FSD1Q9BTV5 496 aa12.37□□□□□ -0.43
HDAC3-214ENST00000495485 TAOK3Q9H2K8 898 aa12.37□□□□□ -0.43
HDAC3-214ENST00000495485 BSDC1Q9NW68 430 aaPredicted RBP12.37□□□□□ -0.43
HDAC3-214ENST00000495485 TAF1P21675 1872 aa12.36□□□□□ -0.43
HDAC3-214ENST00000495485 SGSM2O43147 1006 aa12.36□□□□□ -0.43
HDAC3-214ENST00000495485 HSP90AA1P07900 732 aaKnown RBP12.36□□□□□ -0.43
HDAC3-214ENST00000495485 MCM2P49736 904 aa12.36□□□□□ -0.43
HDAC3-214ENST00000495485 FKBP4Q02790 459 aaKnown RBP eCLIP12.36□□□□□ -0.43
HDAC3-214ENST00000495485 ARHGAP27Q6ZUM4 889 aa12.36□□□□□ -0.43
HDAC3-214ENST00000495485 C3orf67Q6ZVT6 689 aa12.36□□□□□ -0.43
HDAC3-214ENST00000495485 HAUS7Q99871 368 aa12.36□□□□□ -0.43
HDAC3-214ENST00000495485 BOLA2Q9H3K6 86 aa12.36□□□□□ -0.43
HDAC3-214ENST00000495485 PODXL2Q9NZ53 605 aa12.36□□□□□ -0.43
HDAC3-214ENST00000495485 SPEF2Q9C093 1822 aa12.35□□□□□ -0.43
HDAC3-214ENST00000495485 A0A1B0GUL7 405 aa12.35□□□□□ -0.43
HDAC3-214ENST00000495485 C21orf2O43822 256 aa12.35□□□□□ -0.43
HDAC3-214ENST00000495485 MAP4K4O95819 1239 aaPredicted RBP12.35□□□□□ -0.43
HDAC3-214ENST00000495485 LMNB1P20700 586 aa12.35□□□□□ -0.43
HDAC3-214ENST00000495485 TTC39AQ5SRH9 613 aa12.35□□□□□ -0.43
HDAC3-214ENST00000495485 ZNF594Q96JF6 807 aaPredicted RBP12.35□□□□□ -0.43
HDAC3-214ENST00000495485 RTFDC1Q9BY42 306 aaPredicted RBP12.35□□□□□ -0.43
HDAC3-214ENST00000495485 TBC1D2Q9BYX2 928 aa12.35□□□□□ -0.43
HDAC3-214ENST00000495485 ANKRD2Q9GZV1 360 aa12.35□□□□□ -0.43
HDAC3-214ENST00000495485 GREM2Q9H772 168 aa12.35□□□□□ -0.43
HDAC3-214ENST00000495485 DBNLQ9UJU6 430 aaKnown RBP12.35□□□□□ -0.43
HDAC3-214ENST00000495485 IFIT1P09914 478 aaKnown RBP12.34□□□□□ -0.43
HDAC3-214ENST00000495485 ATP2B3Q16720 1220 aa12.34□□□□□ -0.43
HDAC3-214ENST00000495485 LRRC24Q50LG9 513 aa12.34□□□□□ -0.43
HDAC3-214ENST00000495485 RNF20Q5VTR2 975 aa12.34□□□□□ -0.43
HDAC3-214ENST00000495485 CWC27Q6UX04 472 aaKnown RBP12.34□□□□□ -0.43
HDAC3-214ENST00000495485 EYA3Q99504 573 aa12.34□□□□□ -0.43
HDAC3-214ENST00000495485 DBNDD2Q9BQY9 259 aa12.34□□□□□ -0.43
HDAC3-214ENST00000495485 ZNF609O15014 1411 aa12.34□□□□□ -0.43
HDAC3-214ENST00000495485 SNED1Q8TER0 1413 aa12.34□□□□□ -0.43
HDAC3-214ENST00000495485 XDHP47989 1333 aa12.34□□□□□ -0.43
HDAC3-214ENST00000495485 SLC5A1P13866 664 aa12.33□□□□□ -0.44
HDAC3-214ENST00000495485 TIMM10P62072 90 aa12.33□□□□□ -0.44
HDAC3-214ENST00000495485 TTF1Q15361 905 aaPredicted RBP12.33□□□□□ -0.44
HDAC3-214ENST00000495485 ZSCAN25Q6NSZ9 544 aa12.33□□□□□ -0.44
HDAC3-214ENST00000495485 DPP8Q6V1X1 898 aaPredicted RBP12.33□□□□□ -0.44
HDAC3-214ENST00000495485 MPNDQ8N594 471 aa12.33□□□□□ -0.44
HDAC3-214ENST00000495485 CELF1Q92879 486 aaKnown RBP12.33□□□□□ -0.44
HDAC3-214ENST00000495485 ANP32EQ9BTT0 268 aa12.33□□□□□ -0.44
HDAC3-214ENST00000495485 RIPOR2Q9Y4F9 1068 aa12.33□□□□□ -0.44
HDAC3-214ENST00000495485 LTBP1Q14766 1721 aa12.32□□□□□ -0.44
HDAC3-214ENST00000495485 K7ELQ4 463 aaPredicted RBP12.32□□□□□ -0.44
HDAC3-214ENST00000495485 PDE8BO95263 885 aa12.32□□□□□ -0.44
HDAC3-214ENST00000495485 ZFYP08048 801 aaPredicted RBP12.32□□□□□ -0.44
HDAC3-214ENST00000495485 UQCRFS1P1P0C7P4 283 aa12.32□□□□□ -0.44
HDAC3-214ENST00000495485 ZKSCAN1P17029 563 aaPredicted RBP12.32□□□□□ -0.44
HDAC3-214ENST00000495485 KCNJ4P48050 445 aa12.32□□□□□ -0.44
HDAC3-214ENST00000495485 PUM3Q15397 648 aaKnown RBP12.32□□□□□ -0.44
HDAC3-214ENST00000495485 ZNF512BQ96KM6 892 aaPredicted RBP12.32□□□□□ -0.44
HDAC3-214ENST00000495485 CCDC85AQ96PX6 553 aaPredicted RBP12.32□□□□□ -0.44
HDAC3-214ENST00000495485 DNAJC2Q99543 621 aaKnown RBP12.32□□□□□ -0.44
HDAC3-214ENST00000495485 PUS3Q9BZE2 481 aaKnown RBP12.32□□□□□ -0.44
HDAC3-214ENST00000495485 SEC31BQ9NQW1 1179 aa12.32□□□□□ -0.44
HDAC3-214ENST00000495485 PAG1Q9NWQ8 432 aa12.32□□□□□ -0.44
HDAC3-214ENST00000495485 TLR7Q9NYK1 1049 aaKnown RBP12.32□□□□□ -0.44
HDAC3-214ENST00000495485 LEMD3Q9Y2U8 911 aa12.32□□□□□ -0.44
HDAC3-214ENST00000495485 NFKBIEO00221 500 aa12.31□□□□□ -0.44
HDAC3-214ENST00000495485 ATP2B4P23634 1241 aa12.31□□□□□ -0.44
HDAC3-214ENST00000495485 HSPA4P34932 840 aa12.31□□□□□ -0.44
HDAC3-214ENST00000495485 SLC4A3P48751 1232 aa12.31□□□□□ -0.44
HDAC3-214ENST00000495485 KBTBD3Q8NAB2 608 aa12.31□□□□□ -0.44
HDAC3-214ENST00000495485 JDP2Q8WYK2 163 aa12.31□□□□□ -0.44
HDAC3-214ENST00000495485 LPIN2Q92539 896 aa12.31□□□□□ -0.44
HDAC3-214ENST00000495485 IL17RAQ96F46 866 aa12.31□□□□□ -0.44
HDAC3-214ENST00000495485 XAGE2Q96GT9 111 aa12.31□□□□□ -0.44
HDAC3-214ENST00000495485 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.31□□□□□ -0.442e-7■■□□□ 12.8
HDAC3-214ENST00000495485 HELLSQ9NRZ9 838 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms