RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 NDUFB5O43674 189 aa9.15□□□□□ -0.94
PTPN4-212ENST00000488896 MBTPS1Q14703 1052 aa9.15□□□□□ -0.94
PTPN4-212ENST00000488896 TMC1Q8TDI8 760 aa9.15□□□□□ -0.94
PTPN4-212ENST00000488896 BRD1O95696 1058 aa9.14□□□□□ -0.95
PTPN4-212ENST00000488896 PTPRAP18433 802 aa9.14□□□□□ -0.95
PTPN4-212ENST00000488896 NRG1Q02297 640 aaPredicted RBP9.14□□□□□ -0.95
PTPN4-212ENST00000488896 ADGRE1Q14246 886 aa9.14□□□□□ -0.95
PTPN4-212ENST00000488896 SETDB1Q15047 1291 aa9.14□□□□□ -0.95
PTPN4-212ENST00000488896 CARD10Q9BWT7 1032 aa9.14□□□□□ -0.95
PTPN4-212ENST00000488896 LATS2Q9NRM7 1088 aa9.14□□□□□ -0.95
PTPN4-212ENST00000488896 DZANK1Q9NVP4 752 aa9.14□□□□□ -0.95
PTPN4-212ENST00000488896 BIN2Q9UBW5 565 aaPredicted RBP9.14□□□□□ -0.95
PTPN4-212ENST00000488896 PDE2AO00408 941 aaPredicted RBP9.13□□□□□ -0.95
PTPN4-212ENST00000488896 SUZ12Q15022 739 aaKnown RBP9.13□□□□□ -0.95
PTPN4-212ENST00000488896 CACTIN-AS1Q8N1I8 211 aa9.13□□□□□ -0.95
PTPN4-212ENST00000488896 OSMRQ99650 979 aa9.13□□□□□ -0.95
PTPN4-212ENST00000488896 ZFYVE28Q9HCC9 887 aa9.13□□□□□ -0.95
PTPN4-212ENST00000488896 TPSG1Q9NRR2 321 aa9.13□□□□□ -0.95
PTPN4-212ENST00000488896 AMOTL2Q9Y2J4 779 aa9.13□□□□□ -0.95
PTPN4-212ENST00000488896 DLL1O00548 723 aa9.12□□□□□ -0.95
PTPN4-212ENST00000488896 EPHA1P21709 976 aa9.12□□□□□ -0.95
PTPN4-212ENST00000488896 IREB2P48200 963 aaKnown RBP9.12□□□□□ -0.95
PTPN4-212ENST00000488896 IGF2-ASQ6U949 168 aa9.12□□□□□ -0.95
PTPN4-212ENST00000488896 TXNRD3Q86VQ6 643 aa9.12□□□□□ -0.95
PTPN4-212ENST00000488896 ZKSCAN3Q9BRR0 538 aa9.12□□□□□ -0.95
PTPN4-212ENST00000488896 MUC3BQ9H195 1237 aa9.12□□□□□ -0.95
PTPN4-212ENST00000488896 SOWAHDA6NJG2 315 aa9.11□□□□□ -0.95
PTPN4-212ENST00000488896 K7ELQ4 463 aaPredicted RBP9.11□□□□□ -0.95
PTPN4-212ENST00000488896 NFKBIEO00221 500 aa9.11□□□□□ -0.95
PTPN4-212ENST00000488896 EDN3P14138 238 aa9.11□□□□□ -0.95
PTPN4-212ENST00000488896 GALNT11Q8NCW6 608 aa9.11□□□□□ -0.95
PTPN4-212ENST00000488896 ADAM23O75077 832 aa9.1□□□□□ -0.95
PTPN4-212ENST00000488896 ALX3O95076 343 aa9.1□□□□□ -0.95
PTPN4-212ENST00000488896 FAM117BQ6P1L5 589 aa9.1□□□□□ -0.95
PTPN4-212ENST00000488896 ASAP3Q8TDY4 903 aa9.1□□□□□ -0.95
PTPN4-212ENST00000488896 WFDC12Q8WWY7 111 aa9.1□□□□□ -0.95
PTPN4-212ENST00000488896 FSCN2O14926 492 aa9.09□□□□□ -0.95
PTPN4-212ENST00000488896 CABP4P57796 275 aa9.09□□□□□ -0.95
PTPN4-212ENST00000488896 PDE3BQ13370 1112 aa9.09□□□□□ -0.95
PTPN4-212ENST00000488896 ORC1Q13415 861 aa9.09□□□□□ -0.95
PTPN4-212ENST00000488896 USPL1Q5W0Q7 1092 aa9.09□□□□□ -0.95
PTPN4-212ENST00000488896 MAP4K3Q8IVH8 894 aa9.09□□□□□ -0.95
PTPN4-212ENST00000488896 ADAM19Q9H013 955 aa9.09□□□□□ -0.95
PTPN4-212ENST00000488896 SEMA6BQ9H3T3 888 aa9.09□□□□□ -0.95
PTPN4-212ENST00000488896 SRA1Q9HD15 236 aaKnown RBP9.09□□□□□ -0.95
PTPN4-212ENST00000488896 NOS3P29474 1203 aa9.08□□□□□ -0.96
PTPN4-212ENST00000488896 TMEM102Q8N9M5 508 aaPredicted RBP9.08□□□□□ -0.96
PTPN4-212ENST00000488896 SLC7A3Q8WY07 619 aa9.08□□□□□ -0.96
PTPN4-212ENST00000488896 NXPE3Q969Y0 559 aa9.08□□□□□ -0.96
PTPN4-212ENST00000488896 MRPL18Q9H0U6 180 aaKnown RBP9.08□□□□□ -0.96
PTPN4-212ENST00000488896 GNEQ9Y223 722 aaKnown RBP9.08□□□□□ -0.96
PTPN4-212ENST00000488896 CD68P34810 354 aaPredicted RBP9.07□□□□□ -0.96
PTPN4-212ENST00000488896 PEAR1Q5VY43 1037 aaPredicted RBP9.07□□□□□ -0.96
PTPN4-212ENST00000488896 AGGF1Q8N302 714 aaeCLIP9.07□□□□□ -0.96
PTPN4-212ENST00000488896 TP53INP1Q96A56 240 aa9.07□□□□□ -0.96
PTPN4-212ENST00000488896 NIF3L1Q9GZT8 377 aa9.07□□□□□ -0.96
PTPN4-212ENST00000488896 KCNK4Q9NYG8 393 aa9.07□□□□□ -0.96
PTPN4-212ENST00000488896 IVNS1ABPQ9Y6Y0 642 aa9.07□□□□□ -0.96
PTPN4-212ENST00000488896 H3BRJ5 948 aa9.06□□□□□ -0.96
PTPN4-212ENST00000488896 GPR182O15218 404 aa9.06□□□□□ -0.96
PTPN4-212ENST00000488896 DDX3YO15523 660 aaKnown RBP9.06□□□□□ -0.96
PTPN4-212ENST00000488896 RSPO4Q2I0M5 234 aaPredicted RBP9.06□□□□□ -0.96
PTPN4-212ENST00000488896 FOXD4L6Q3SYB3 417 aaPredicted RBP9.06□□□□□ -0.96
PTPN4-212ENST00000488896 FOXD4L3Q6VB84 417 aaPredicted RBP9.06□□□□□ -0.96
PTPN4-212ENST00000488896 KLHDC7BQ96G42 594 aa9.06□□□□□ -0.96
PTPN4-212ENST00000488896 FAM129BQ96TA1 746 aa9.06□□□□□ -0.96
PTPN4-212ENST00000488896 AKTIPQ9H8T0 292 aa9.06□□□□□ -0.96
PTPN4-212ENST00000488896 METTL12A8MUP2 240 aa9.05□□□□□ -0.96
PTPN4-212ENST00000488896 WISP1O95388 367 aa9.05□□□□□ -0.96
PTPN4-212ENST00000488896 NEFLP07196 543 aa9.05□□□□□ -0.96
PTPN4-212ENST00000488896 DCAF11Q8TEB1 546 aa9.05□□□□□ -0.96
PTPN4-212ENST00000488896 BSNDQ8WZ55 320 aa9.05□□□□□ -0.96
PTPN4-212ENST00000488896 CITED4Q96RK1 184 aa9.05□□□□□ -0.96
PTPN4-212ENST00000488896 SEC31BQ9NQW1 1179 aa9.05□□□□□ -0.96
PTPN4-212ENST00000488896 F8W735 103 aaPredicted RBP9.04□□□□□ -0.96
PTPN4-212ENST00000488896 CPNE3O75131 537 aaKnown RBP9.04□□□□□ -0.96
PTPN4-212ENST00000488896 HGSNATQ68CP4 663 aa9.04□□□□□ -0.96
PTPN4-212ENST00000488896 ACAD11Q709F0 780 aa9.04□□□□□ -0.96
PTPN4-212ENST00000488896 GALNT12Q8IXK2 581 aa9.04□□□□□ -0.96
PTPN4-212ENST00000488896 KLHL23Q8NBE8 558 aa9.04□□□□□ -0.96
PTPN4-212ENST00000488896 MEGF10Q96KG7 1140 aa9.04□□□□□ -0.96
PTPN4-212ENST00000488896 SOX13Q9UN79 622 aa9.04□□□□□ -0.96
PTPN4-212ENST00000488896 A0A1W2PP55 124 aa9.03□□□□□ -0.96
PTPN4-212ENST00000488896 GLB1P16278 677 aa9.03□□□□□ -0.96
PTPN4-212ENST00000488896 MAPK1P28482 360 aa9.03□□□□□ -0.96
PTPN4-212ENST00000488896 NLRP12P59046 1061 aa9.03□□□□□ -0.96
PTPN4-212ENST00000488896 DUOXA2Q1HG44 320 aa9.03□□□□□ -0.96
PTPN4-212ENST00000488896 NKAPLQ5M9Q1 402 aa9.03□□□□□ -0.96
PTPN4-212ENST00000488896 LIN7BQ9HAP6 207 aa9.03□□□□□ -0.96
PTPN4-212ENST00000488896 EIF1AYO14602 144 aaKnown RBP9.02□□□□□ -0.97
PTPN4-212ENST00000488896 PIP4K2BP78356 416 aa9.02□□□□□ -0.97
PTPN4-212ENST00000488896 IKBKEQ14164 716 aa9.02□□□□□ -0.97
PTPN4-212ENST00000488896 VN1R5Q7Z5H4 357 aa9.02□□□□□ -0.97
PTPN4-212ENST00000488896 UBASH3BQ8TF42 649 aa9.02□□□□□ -0.97
PTPN4-212ENST00000488896 NPHS2Q9NP85 383 aa9.02□□□□□ -0.97
PTPN4-212ENST00000488896 DYRK3O43781 588 aa9.01□□□□□ -0.97
PTPN4-212ENST00000488896 ADAM11O75078 769 aa9.01□□□□□ -0.97
PTPN4-212ENST00000488896 ARL4DP49703 201 aa9.01□□□□□ -0.97
PTPN4-212ENST00000488896 KCNA1Q09470 495 aa9.01□□□□□ -0.97
PTPN4-212ENST00000488896 TMC7Q7Z402 723 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms