RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 SMYD5Q6GMV2 418 aa10.05□□□□□ -0.8
USP40-216ENST00000485943 ITPRIPQ8IWB1 547 aa10.05□□□□□ -0.8
USP40-216ENST00000485943 SP8Q8IXZ3 490 aa10.05□□□□□ -0.8
USP40-216ENST00000485943 PLPP6Q8IY26 295 aa10.05□□□□□ -0.8
USP40-216ENST00000485943 FBXW7Q969H0 707 aa10.05□□□□□ -0.8
USP40-216ENST00000485943 ZC3H12CQ9C0D7 883 aaKnown RBP10.05□□□□□ -0.8
USP40-216ENST00000485943 CHMP4BQ9H444 224 aaKnown RBP10.05□□□□□ -0.8
USP40-216ENST00000485943 GGA1Q9UJY5 639 aa10.05□□□□□ -0.8
USP40-216ENST00000485943 GJA3Q9Y6H8 435 aa10.05□□□□□ -0.8
USP40-216ENST00000485943 ZC3H4Q9UPT8 1303 aaKnown RBP10.05□□□□□ -0.8
USP40-216ENST00000485943 H7C1W4 665 aa10.04□□□□□ -0.8
USP40-216ENST00000485943 PLIN1O60240 522 aa10.04□□□□□ -0.8
USP40-216ENST00000485943 UFL1O94874 794 aa10.04□□□□□ -0.8
USP40-216ENST00000485943 GNAI3P08754 354 aa10.04□□□□□ -0.8
USP40-216ENST00000485943 WASHC4Q2M389 1173 aa10.04□□□□□ -0.8
USP40-216ENST00000485943 ATF7IPQ6VMQ6 1270 aa10.04□□□□□ -0.8
USP40-216ENST00000485943 C3orf67Q6ZVT6 689 aa10.04□□□□□ -0.8
USP40-216ENST00000485943 TRMT2AQ8IZ69 625 aaKnown RBP10.04□□□□□ -0.8
USP40-216ENST00000485943 ZNF784Q8NCA9 323 aaPredicted RBP10.04□□□□□ -0.8
USP40-216ENST00000485943 PSMD1Q99460 953 aa10.04□□□□□ -0.8
USP40-216ENST00000485943 ANKRD2Q9GZV1 360 aa10.04□□□□□ -0.8
USP40-216ENST00000485943 SPEF2Q9C093 1822 aa10.04□□□□□ -0.8
USP40-216ENST00000485943 RIMBP2O15034 1052 aa10.03□□□□□ -0.8
USP40-216ENST00000485943 FRAT2O75474 233 aaPredicted RBP10.03□□□□□ -0.8
USP40-216ENST00000485943 BCAR3O75815 825 aa10.03□□□□□ -0.8
USP40-216ENST00000485943 FER1L6Q2WGJ9 1857 aa10.03□□□□□ -0.8
USP40-216ENST00000485943 FAM161AQ3B820 660 aa10.03□□□□□ -0.8
USP40-216ENST00000485943 LMBR1LQ6UX01 489 aa10.03□□□□□ -0.8
USP40-216ENST00000485943 VPS37DQ86XT2 251 aa10.03□□□□□ -0.8
USP40-216ENST00000485943 TTLL11Q8NHH1 800 aa10.03□□□□□ -0.8
USP40-216ENST00000485943 ARHGAP45Q92619 1136 aa10.03□□□□□ -0.8
USP40-216ENST00000485943 CELF1Q92879 486 aaKnown RBP10.03□□□□□ -0.8
USP40-216ENST00000485943 L3MBTL3Q96JM7 780 aaPredicted RBP10.03□□□□□ -0.8
USP40-216ENST00000485943 DCBLD2Q96PD2 775 aa10.03□□□□□ -0.8
USP40-216ENST00000485943 GREM2Q9H772 168 aa10.03□□□□□ -0.8
USP40-216ENST00000485943 SEC31BQ9NQW1 1179 aa10.03□□□□□ -0.8
USP40-216ENST00000485943 LTBP3Q9NS15 1303 aa10.03□□□□□ -0.8
USP40-216ENST00000485943 SBF1O95248 1867 aa10.02□□□□□ -0.8
USP40-216ENST00000485943 TAF1P21675 1872 aa10.02□□□□□ -0.8
USP40-216ENST00000485943 TIAM2Q8IVF5 1701 aa10.02□□□□□ -0.8
USP40-216ENST00000485943 IQCA1LA6NCM1 817 aa10.02□□□□□ -0.81
USP40-216ENST00000485943 NFKBIEO00221 500 aa10.02□□□□□ -0.81
USP40-216ENST00000485943 ATP2B4P23634 1241 aa10.02□□□□□ -0.81
USP40-216ENST00000485943 OS9Q13438 667 aaPredicted RBP10.02□□□□□ -0.81
USP40-216ENST00000485943 TNIP1Q15025 636 aa10.02□□□□□ -0.81
USP40-216ENST00000485943 AOC3Q16853 763 aa10.02□□□□□ -0.81
USP40-216ENST00000485943 OLFM4Q6UX06 510 aa10.02□□□□□ -0.81
USP40-216ENST00000485943 LDHAL6AQ6ZMR3 332 aa10.02□□□□□ -0.81
USP40-216ENST00000485943 DZIP1LQ8IYY4 767 aaKnown RBP10.02□□□□□ -0.81
USP40-216ENST00000485943 VPS33BQ9H267 617 aa10.02□□□□□ -0.81
USP40-216ENST00000485943 RCAN3Q9UKA8 241 aa10.02□□□□□ -0.81
USP40-216ENST00000485943 XDHP47989 1333 aa10.02□□□□□ -0.81
USP40-216ENST00000485943 GOLGB1Q14789 3259 aaKnown RBP10.01□□□□□ -0.81
USP40-216ENST00000485943 SPDYE16A6NNV3 312 aaPredicted RBP10.01□□□□□ -0.81
USP40-216ENST00000485943 ZMYND10O75800 440 aa10.01□□□□□ -0.81
USP40-216ENST00000485943 SUCLG2Q96I99 432 aa10.01□□□□□ -0.81
USP40-216ENST00000485943 PLA2G12BQ9BX93 195 aa10.01□□□□□ -0.81
USP40-216ENST00000485943 BSDC1Q9NW68 430 aaPredicted RBP10.01□□□□□ -0.81
USP40-216ENST00000485943 DICER1Q9UPY3 1922 aaKnown RBP10.01□□□□□ -0.81
USP40-216ENST00000485943 GLTPD2A6NH11 291 aa10□□□□□ -0.81
USP40-216ENST00000485943 SEC24BO95487 1268 aa10□□□□□ -0.81
USP40-216ENST00000485943 GNAI2P04899 355 aa10□□□□□ -0.81
USP40-216ENST00000485943 POTEIP0CG38 1075 aa10□□□□□ -0.81
USP40-216ENST00000485943 VEGFAP15692 232 aaPredicted RBP10□□□□□ -0.81
USP40-216ENST00000485943 BRPF1P55201 1214 aaPredicted RBP10□□□□□ -0.81
USP40-216ENST00000485943 EAPPQ56P03 285 aaPredicted RBP10□□□□□ -0.81
USP40-216ENST00000485943 METTL24Q5JXM2 366 aa10□□□□□ -0.81
USP40-216ENST00000485943 RBM26Q5T8P6 1007 aaKnown RBP10□□□□□ -0.81
USP40-216ENST00000485943 SLC39A7Q92504 469 aa10□□□□□ -0.81
USP40-216ENST00000485943 BICC1Q9H694 974 aaKnown RBP10□□□□□ -0.81
USP40-216ENST00000485943 RRAGCQ9HB90 399 aa10□□□□□ -0.81
USP40-216ENST00000485943 NBPF7P0C2Y1 421 aaPredicted RBP9.99□□□□□ -0.81
USP40-216ENST00000485943 TRIM27P14373 513 aa9.99□□□□□ -0.81
USP40-216ENST00000485943 GPSM2P81274 684 aa9.99□□□□□ -0.81
USP40-216ENST00000485943 CIAPIN1Q6FI81 312 aa9.99□□□□□ -0.81
USP40-216ENST00000485943 ZNF804AQ7Z570 1209 aa9.99□□□□□ -0.81
USP40-216ENST00000485943 DDNO94850 711 aaPredicted RBP9.98□□□□□ -0.81
USP40-216ENST00000485943 CHRNDQ07001 517 aa9.98□□□□□ -0.81
USP40-216ENST00000485943 DOK7Q18PE1 504 aa9.98□□□□□ -0.81
USP40-216ENST00000485943 CAVIN4Q5BKX8 364 aa9.98□□□□□ -0.81
USP40-216ENST00000485943 C7orf43Q8WVR3 580 aa9.98□□□□□ -0.81
USP40-216ENST00000485943 SIL1Q9H173 461 aa9.98□□□□□ -0.81
USP40-216ENST00000485943 DBNDD1Q9H9R9 158 aa9.98□□□□□ -0.81
USP40-216ENST00000485943 SLC24A3Q9HC58 644 aa9.98□□□□□ -0.81
USP40-216ENST00000485943 ZNRF3Q9ULT6 936 aa9.98□□□□□ -0.81
USP40-216ENST00000485943 LEMD3Q9Y2U8 911 aa9.98□□□□□ -0.81
USP40-216ENST00000485943 LRRFIP2Q9Y608 721 aaKnown RBP9.98□□□□□ -0.81
USP40-216ENST00000485943 MROH5Q6ZUA9 1318 aa9.98□□□□□ -0.81
USP40-216ENST00000485943 RTL9Q8NET4 1388 aa9.98□□□□□ -0.81
USP40-216ENST00000485943 H7C1D1 291 aa9.97□□□□□ -0.81
USP40-216ENST00000485943 ECE2O60344 883 aa9.97□□□□□ -0.81
USP40-216ENST00000485943 RAD17O75943 681 aa9.97□□□□□ -0.81
USP40-216ENST00000485943 CSF1RP07333 972 aa9.97□□□□□ -0.81
USP40-216ENST00000485943 IFIT1P09914 478 aaKnown RBP9.97□□□□□ -0.81
USP40-216ENST00000485943 C7P10643 843 aa9.97□□□□□ -0.81
USP40-216ENST00000485943 KIAA2012Q0VF49 1180 aa9.97□□□□□ -0.81
USP40-216ENST00000485943 G3BP1Q13283 466 aaKnown RBP eCLIP9.97□□□□□ -0.81
USP40-216ENST00000485943 GORABQ5T7V8 394 aa9.97□□□□□ -0.81
USP40-216ENST00000485943 INTS3Q68E01 1043 aaKnown RBP9.97□□□□□ -0.81
USP40-216ENST00000485943 GPC2Q8N158 579 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms