RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 MMP14P50281 582 aa10.17□□□□□ -0.78
USP54-212ENST00000480210 DPY19L2Q6NUT2 758 aa10.17□□□□□ -0.78
USP54-212ENST00000480210 OLFM4Q6UX06 510 aa10.17□□□□□ -0.78
USP54-212ENST00000480210 ZNF804AQ7Z570 1209 aa10.17□□□□□ -0.78
USP54-212ENST00000480210 NIM1KQ8IY84 436 aa10.17□□□□□ -0.78
USP54-212ENST00000480210 CLASRPQ8N2M8 674 aaKnown RBP10.17□□□□□ -0.78
USP54-212ENST00000480210 ZNF277Q9NRM2 450 aaPredicted RBP10.17□□□□□ -0.78
USP54-212ENST00000480210 FZD9O00144 591 aa10.16□□□□□ -0.78
USP54-212ENST00000480210 IGSF3O75054 1194 aa10.16□□□□□ -0.78
USP54-212ENST00000480210 SASH1O94885 1247 aa10.16□□□□□ -0.78
USP54-212ENST00000480210 HIBADHP31937 336 aaKnown RBP10.16□□□□□ -0.78
USP54-212ENST00000480210 EIF6P56537 245 aaKnown RBP10.16□□□□□ -0.78
USP54-212ENST00000480210 RASSF7Q02833 373 aa10.16□□□□□ -0.78
USP54-212ENST00000480210 TNIP1Q15025 636 aa10.16□□□□□ -0.78
USP54-212ENST00000480210 ATP2B3Q16720 1220 aa10.16□□□□□ -0.78
USP54-212ENST00000480210 C9orf131Q5VYM1 1079 aa10.16□□□□□ -0.78
USP54-212ENST00000480210 VPS37DQ86XT2 251 aa10.16□□□□□ -0.78
USP54-212ENST00000480210 HELBQ8NG08 1087 aaPredicted RBP10.16□□□□□ -0.78
USP54-212ENST00000480210 RHPN1Q8TCX5 695 aa10.16□□□□□ -0.78
USP54-212ENST00000480210 LRRCC1Q9C099 1032 aa10.16□□□□□ -0.78
USP54-212ENST00000480210 GNL3LQ9NVN8 582 aaKnown RBP10.16□□□□□ -0.78
USP54-212ENST00000480210 RNF181Q9P0P0 153 aa10.16□□□□□ -0.78
USP54-212ENST00000480210 ZNRF3Q9ULT6 936 aa10.16□□□□□ -0.78
USP54-212ENST00000480210 DUOX1Q9NRD9 1551 aa10.16□□□□□ -0.78
USP54-212ENST00000480210 ARAP2Q8WZ64 1704 aa10.16□□□□□ -0.78
USP54-212ENST00000480210 SEMA3EO15041 775 aa10.15□□□□□ -0.78
USP54-212ENST00000480210 IL1R1P14778 569 aa10.15□□□□□ -0.78
USP54-212ENST00000480210 TFCP2Q12800 502 aa10.15□□□□□ -0.78
USP54-212ENST00000480210 AOC3Q16853 763 aa10.15□□□□□ -0.78
USP54-212ENST00000480210 FBXO33Q7Z6M2 555 aa10.15□□□□□ -0.78
USP54-212ENST00000480210 EXOC6BQ9Y2D4 811 aa10.15□□□□□ -0.78
USP54-212ENST00000480210 A0A1B0GUL7 405 aa10.14□□□□□ -0.79
USP54-212ENST00000480210 RIMBP2O15034 1052 aa10.14□□□□□ -0.79
USP54-212ENST00000480210 UQCRFS1P1P0C7P4 283 aa10.14□□□□□ -0.79
USP54-212ENST00000480210 FKBP1AP62942 108 aaKnown RBP10.14□□□□□ -0.79
USP54-212ENST00000480210 TNNI3KQ59H18 835 aa10.14□□□□□ -0.79
USP54-212ENST00000480210 CCDC158Q5M9N0 1113 aa10.14□□□□□ -0.79
USP54-212ENST00000480210 FAM84BQ96KN1 310 aaPredicted RBP10.14□□□□□ -0.79
USP54-212ENST00000480210 NEUROD6Q96NK8 337 aa10.14□□□□□ -0.79
USP54-212ENST00000480210 CD209Q9NNX6 404 aa10.14□□□□□ -0.79
USP54-212ENST00000480210 FPGT-TNNI3KV9GXZ4 949 aa10.14□□□□□ -0.79
USP54-212ENST00000480210 TIAM2Q8IVF5 1701 aa10.13□□□□□ -0.79
USP54-212ENST00000480210 MYO3BQ8WXR4 1341 aa10.13□□□□□ -0.79
USP54-212ENST00000480210 IRS2Q9Y4H2 1338 aa10.13□□□□□ -0.79
USP54-212ENST00000480210 SCN4AP35499 1836 aa10.13□□□□□ -0.79
USP54-212ENST00000480210 ECE2O60344 883 aa10.13□□□□□ -0.79
USP54-212ENST00000480210 TIMM10P62072 90 aa10.13□□□□□ -0.79
USP54-212ENST00000480210 IRX6P78412 446 aaPredicted RBP10.13□□□□□ -0.79
USP54-212ENST00000480210 GORABQ5T7V8 394 aa10.13□□□□□ -0.79
USP54-212ENST00000480210 STRIP1Q5VSL9 837 aa10.13□□□□□ -0.79
USP54-212ENST00000480210 CIAPIN1Q6FI81 312 aa10.13□□□□□ -0.79
USP54-212ENST00000480210 SMC5Q8IY18 1101 aa10.13□□□□□ -0.79
USP54-212ENST00000480210 TDRD7Q8NHU6 1098 aaKnown RBP10.13□□□□□ -0.79
USP54-212ENST00000480210 TBC1D22AQ8WUA7 517 aa10.13□□□□□ -0.79
USP54-212ENST00000480210 XAGE2Q96GT9 111 aa10.13□□□□□ -0.79
USP54-212ENST00000480210 ZNF512BQ96KM6 892 aaPredicted RBP10.13□□□□□ -0.79
USP54-212ENST00000480210 DENND2AQ9ULE3 1009 aa10.13□□□□□ -0.79
USP54-212ENST00000480210 SRCAPQ6ZRS2 3230 aa10.12□□□□□ -0.79
USP54-212ENST00000480210 PDS5AQ29RF7 1337 aaKnown RBP10.12□□□□□ -0.79
USP54-212ENST00000480210 KDM2BQ8NHM5 1336 aa10.12□□□□□ -0.79
USP54-212ENST00000480210 USP17L3A6NCW0 530 aa10.12□□□□□ -0.79
USP54-212ENST00000480210 USP17L4A6NCW7 530 aa10.12□□□□□ -0.79
USP54-212ENST00000480210 GLTPD2A6NH11 291 aa10.12□□□□□ -0.79
USP54-212ENST00000480210 FRAT2O75474 233 aaPredicted RBP10.12□□□□□ -0.79
USP54-212ENST00000480210 IFIT2P09913 472 aaKnown RBP10.12□□□□□ -0.79
USP54-212ENST00000480210 RPS12P25398 132 aaKnown RBP10.12□□□□□ -0.79
USP54-212ENST00000480210 TTLL5Q6EMB2 1281 aa10.12□□□□□ -0.79
USP54-212ENST00000480210 USP17L1Q7RTZ2 530 aa10.12□□□□□ -0.79
USP54-212ENST00000480210 GPC2Q8N158 579 aa10.12□□□□□ -0.79
USP54-212ENST00000480210 ZGPATQ8N5A5 531 aaKnown RBP10.12□□□□□ -0.79
USP54-212ENST00000480210 AGBL3Q8NEM8 1001 aa10.12□□□□□ -0.79
USP54-212ENST00000480210 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.12□□□□□ -0.79
USP54-212ENST00000480210 SUGT1Q9Y2Z0 365 aa10.12□□□□□ -0.79
USP54-212ENST00000480210 ZNF609O15014 1411 aa10.12□□□□□ -0.79
USP54-212ENST00000480210 SCN9AQ15858 1988 aa10.12□□□□□ -0.79
USP54-212ENST00000480210 FAM205AQ6ZU69 1335 aa10.11□□□□□ -0.79
USP54-212ENST00000480210 VIL1P09327 827 aaKnown RBP10.11□□□□□ -0.79
USP54-212ENST00000480210 GYG1P46976 350 aa10.11□□□□□ -0.79
USP54-212ENST00000480210 PRELPP51888 382 aa10.11□□□□□ -0.79
USP54-212ENST00000480210 CXCL9Q07325 125 aa10.11□□□□□ -0.79
USP54-212ENST00000480210 DOK7Q18PE1 504 aa10.11□□□□□ -0.79
USP54-212ENST00000480210 CCDC102BQ68D86 513 aa10.11□□□□□ -0.79
USP54-212ENST00000480210 TMED8Q6PL24 325 aaPredicted RBP10.11□□□□□ -0.79
USP54-212ENST00000480210 TXNRD3Q86VQ6 643 aa10.11□□□□□ -0.79
USP54-212ENST00000480210 WDR66Q8TBY9 1149 aa10.11□□□□□ -0.79
USP54-212ENST00000480210 DPF2Q92785 391 aa10.11□□□□□ -0.79
USP54-212ENST00000480210 EAF2Q96CJ1 260 aaPredicted RBP10.11□□□□□ -0.79
USP54-212ENST00000480210 GPATCH3Q96I76 525 aa10.11□□□□□ -0.79
USP54-212ENST00000480210 DBNDD1Q9H9R9 158 aa10.11□□□□□ -0.79
USP54-212ENST00000480210 AKAP11Q9UKA4 1901 aa10.11□□□□□ -0.79
USP54-212ENST00000480210 YDJCA8MPS7 323 aa10.1□□□□□ -0.79
USP54-212ENST00000480210 SNAP23O00161 211 aa10.1□□□□□ -0.79
USP54-212ENST00000480210 IGHDP01880 384 aa10.1□□□□□ -0.79
USP54-212ENST00000480210 ARID4AP29374 1257 aaPredicted RBP10.1□□□□□ -0.79
USP54-212ENST00000480210 BCAMP50895 628 aa10.1□□□□□ -0.79
USP54-212ENST00000480210 TTC39AQ5SRH9 613 aa10.1□□□□□ -0.79
USP54-212ENST00000480210 ANKRD45Q5TZF3 282 aa10.1□□□□□ -0.79
USP54-212ENST00000480210 CENPQQ7L2Z9 268 aaPredicted RBP10.1□□□□□ -0.79
USP54-212ENST00000480210 AACSQ86V21 672 aa10.1□□□□□ -0.79
USP54-212ENST00000480210 IL1RAPL2Q9NP60 686 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms