RNA–Protein interactions for RNA: ENST00000473969.6

USF1-205, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 1,092 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-205ENST00000473969 VPS37DQ86XT2 251 aa17.08■□□□□ 0.32
USF1-205ENST00000473969 C1orf115Q9H7X2 142 aa17.08■□□□□ 0.32
USF1-205ENST00000473969 COPRSQ9NQ92 184 aa17.08■□□□□ 0.32
USF1-205ENST00000473969 LTBP1Q14766 1721 aa17.07■□□□□ 0.32
USF1-205ENST00000473969 USP17L3A6NCW0 530 aa17.07■□□□□ 0.32
USF1-205ENST00000473969 USP17L4A6NCW7 530 aa17.07■□□□□ 0.32
USF1-205ENST00000473969 POTECB2RU33 542 aa17.07■□□□□ 0.32
USF1-205ENST00000473969 SNAP23O00161 211 aa17.07■□□□□ 0.32
USF1-205ENST00000473969 IFIT1P09914 478 aaKnown RBP17.07■□□□□ 0.32
USF1-205ENST00000473969 GMPSP49915 693 aaPredicted RBP17.07■□□□□ 0.32
USF1-205ENST00000473969 ATP8B2P98198 1209 aa17.07■□□□□ 0.32
USF1-205ENST00000473969 G3BP1Q13283 466 aaKnown RBP eCLIP17.07■□□□□ 0.32
USF1-205ENST00000473969 EAPPQ56P03 285 aaPredicted RBP17.07■□□□□ 0.32
USF1-205ENST00000473969 CAVIN4Q5BKX8 364 aa17.07■□□□□ 0.32
USF1-205ENST00000473969 IFFO2Q5TF58 517 aa17.07■□□□□ 0.32
USF1-205ENST00000473969 USP17L1Q7RTZ2 530 aa17.07■□□□□ 0.32
USF1-205ENST00000473969 PNMA8AQ86V59 439 aaPredicted RBP17.07■□□□□ 0.32
USF1-205ENST00000473969 RBM46Q8TBY0 533 aaKnown RBP17.07■□□□□ 0.32
USF1-205ENST00000473969 TAF1DQ9H5J8 278 aaPredicted RBP17.07■□□□□ 0.32
USF1-205ENST00000473969 PA2G4Q9UQ80 394 aaKnown RBP17.07■□□□□ 0.32
USF1-205ENST00000473969 H7C1D1 291 aa17.06■□□□□ 0.32
USF1-205ENST00000473969 RPS12P25398 132 aaKnown RBP17.06■□□□□ 0.32
USF1-205ENST00000473969 KLRK1P26718 216 aa17.06■□□□□ 0.32
USF1-205ENST00000473969 PUM3Q15397 648 aaKnown RBP17.06■□□□□ 0.32
USF1-205ENST00000473969 TXNRD3Q86VQ6 643 aa17.06■□□□□ 0.32
USF1-205ENST00000473969 KCNQ5Q9NR82 932 aa17.06■□□□□ 0.32
USF1-205ENST00000473969 CLEC11AQ9Y240 323 aa17.06■□□□□ 0.32
USF1-205ENST00000473969 WDR90Q96KV7 1748 aa17.06■□□□□ 0.32
USF1-205ENST00000473969 VIL1P09327 827 aaKnown RBP17.05■□□□□ 0.32
USF1-205ENST00000473969 SLC5A1P13866 664 aa17.05■□□□□ 0.32
USF1-205ENST00000473969 HIBADHP31937 336 aaKnown RBP17.05■□□□□ 0.32
USF1-205ENST00000473969 OS9Q13438 667 aaPredicted RBP17.05■□□□□ 0.32
USF1-205ENST00000473969 SMC1BQ8NDV3 1235 aa17.05■□□□□ 0.32
USF1-205ENST00000473969 DPF2Q92785 391 aa17.05■□□□□ 0.32
USF1-205ENST00000473969 CD209Q9NNX6 404 aa17.05■□□□□ 0.32
USF1-205ENST00000473969 GPRC5DQ9NZD1 345 aa17.05■□□□□ 0.32
USF1-205ENST00000473969 ZBTB12Q9Y330 459 aaPredicted RBP17.05■□□□□ 0.32
USF1-205ENST00000473969 PNMA6EA0A0J9YXQ4 647 aa17.04■□□□□ 0.32
USF1-205ENST00000473969 FRAT2O75474 233 aaPredicted RBP17.04■□□□□ 0.32
USF1-205ENST00000473969 EPS15P42566 896 aa17.04■□□□□ 0.32
USF1-205ENST00000473969 SCNN1DP51172 638 aa17.04■□□□□ 0.32
USF1-205ENST00000473969 RRP1P56182 461 aaKnown RBP17.04■□□□□ 0.32
USF1-205ENST00000473969 TTLL5Q6EMB2 1281 aa17.04■□□□□ 0.32
USF1-205ENST00000473969 RSBN1LQ6PCB5 846 aaPredicted RBP17.04■□□□□ 0.32
USF1-205ENST00000473969 ATG9AQ7Z3C6 839 aa17.04■□□□□ 0.32
USF1-205ENST00000473969 LPIN2Q92539 896 aa17.04■□□□□ 0.32
USF1-205ENST00000473969 ADARB2Q9NS39 739 aaKnown RBP17.04■□□□□ 0.32
USF1-205ENST00000473969 CNOT7Q9UIV1 285 aaKnown RBP17.04■□□□□ 0.32
USF1-205ENST00000473969 FSTL1Q12841 308 aa17.03■□□□□ 0.32
USF1-205ENST00000473969 C20orf194Q5TEA3 1177 aa17.03■□□□□ 0.32
USF1-205ENST00000473969 STRIP1Q5VSL9 837 aa17.03■□□□□ 0.32
USF1-205ENST00000473969 VGLL2Q8N8G2 317 aa17.03■□□□□ 0.32
USF1-205ENST00000473969 AGBL3Q8NEM8 1001 aa17.03■□□□□ 0.32
USF1-205ENST00000473969 AKAP2Q9Y2D5 859 aa17.03■□□□□ 0.32
USF1-205ENST00000473969 MYO3BQ8WXR4 1341 aa17.02■□□□□ 0.32
USF1-205ENST00000473969 HMMRO75330 724 aa17.02■□□□□ 0.32
USF1-205ENST00000473969 GYG1P46976 350 aa17.02■□□□□ 0.32
USF1-205ENST00000473969 GTF2IP78347 998 aa17.02■□□□□ 0.32
USF1-205ENST00000473969 ATP2B3Q16720 1220 aa17.02■□□□□ 0.32
USF1-205ENST00000473969 USP50Q70EL3 339 aaPredicted RBP17.02■□□□□ 0.32
USF1-205ENST00000473969 LDHDQ86WU2 507 aa17.02■□□□□ 0.32
USF1-205ENST00000473969 MICALL2Q8IY33 904 aa17.02■□□□□ 0.32
USF1-205ENST00000473969 SSH3Q8TE77 659 aa17.02■□□□□ 0.32
USF1-205ENST00000473969 ZBTB40Q9NUA8 1239 aa17.02■□□□□ 0.32
USF1-205ENST00000473969 SURF6O75683 361 aaKnown RBP17.01■□□□□ 0.31
USF1-205ENST00000473969 IL1R1P14778 569 aa17.01■□□□□ 0.31
USF1-205ENST00000473969 POLA2Q14181 598 aa17.01■□□□□ 0.31
USF1-205ENST00000473969 CHADLQ6NUI6 762 aa17.01■□□□□ 0.31
USF1-205ENST00000473969 CEP85Q6P2H3 762 aa17.01■□□□□ 0.31
USF1-205ENST00000473969 RPAP2Q8IXW5 612 aaPredicted RBP17.01■□□□□ 0.31
USF1-205ENST00000473969 OGFOD1Q8N543 542 aa17.01■□□□□ 0.31
USF1-205ENST00000473969 FAM84BQ96KN1 310 aaPredicted RBP17.01■□□□□ 0.31
USF1-205ENST00000473969 SCN4AP35499 1836 aa17■□□□□ 0.31
USF1-205ENST00000473969 FGFR2P21802 821 aa17■□□□□ 0.31
USF1-205ENST00000473969 TFCP2Q12800 502 aa17■□□□□ 0.31
USF1-205ENST00000473969 GNL3LQ9NVN8 582 aaKnown RBP17■□□□□ 0.31
USF1-205ENST00000473969 HDAC9Q9UKV0 1011 aa17■□□□□ 0.31
USF1-205ENST00000473969 IRS2Q9Y4H2 1338 aa16.99■□□□□ 0.31
USF1-205ENST00000473969 SASH1O94885 1247 aa16.99■□□□□ 0.31
USF1-205ENST00000473969 USP17L8P0C7I0 530 aa16.99■□□□□ 0.31
USF1-205ENST00000473969 HSP90AB4PQ58FF6 505 aa16.99■□□□□ 0.31
USF1-205ENST00000473969 DACT2Q5SW24 774 aa16.99■□□□□ 0.31
USF1-205ENST00000473969 RBM26Q5T8P6 1007 aaKnown RBP16.99■□□□□ 0.31
USF1-205ENST00000473969 FBXO33Q7Z6M2 555 aa16.99■□□□□ 0.31
USF1-205ENST00000473969 MMP14P50281 582 aa16.98■□□□□ 0.31
USF1-205ENST00000473969 BCAMP50895 628 aa16.98■□□□□ 0.31
USF1-205ENST00000473969 GORABQ5T7V8 394 aa16.98■□□□□ 0.31
USF1-205ENST00000473969 TDRD7Q8NHU6 1098 aaKnown RBP16.98■□□□□ 0.31
USF1-205ENST00000473969 NEUROD6Q96NK8 337 aa16.98■□□□□ 0.31
USF1-205ENST00000473969 POTEIP0CG38 1075 aa16.97■□□□□ 0.31
USF1-205ENST00000473969 POTEJP0CG39 1038 aa16.97■□□□□ 0.31
USF1-205ENST00000473969 TBC1D10BQ4KMP7 808 aaPredicted RBP16.97■□□□□ 0.31
USF1-205ENST00000473969 ERC1Q8IUD2 1116 aa16.97■□□□□ 0.31
USF1-205ENST00000473969 IQSEC3Q9UPP2 1182 aaPredicted RBP16.97■□□□□ 0.31
USF1-205ENST00000473969 A0A1B0GUL7 405 aa16.96■□□□□ 0.31
USF1-205ENST00000473969 TIMM10P62072 90 aa16.96■□□□□ 0.31
USF1-205ENST00000473969 FKBP1AP62942 108 aaKnown RBP16.96■□□□□ 0.31
USF1-205ENST00000473969 CHAF1AQ13111 956 aaPredicted RBP16.96■□□□□ 0.31
USF1-205ENST00000473969 KIF4BQ2VIQ3 1234 aa16.96■□□□□ 0.31
USF1-205ENST00000473969 SAMD7Q7Z3H4 446 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms