RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 ZNF804AQ7Z570 1209 aa14.77□□□□□ -0.05
VPS52-213ENST00000461743 PNMA8AQ86V59 439 aaPredicted RBP14.77□□□□□ -0.05
VPS52-213ENST00000461743 POLR2AP24928 1970 aaKnown RBP14.76□□□□□ -0.05
VPS52-213ENST00000461743 ZBTB7BO15156 539 aaPredicted RBP14.76□□□□□ -0.05
VPS52-213ENST00000461743 SRGAP3O43295 1099 aa14.76□□□□□ -0.05
VPS52-213ENST00000461743 RAD17O75943 681 aa14.76□□□□□ -0.05
VPS52-213ENST00000461743 EPHX2P34913 555 aa14.76□□□□□ -0.05
VPS52-213ENST00000461743 IL15P40933 162 aaPredicted RBP14.76□□□□□ -0.05
VPS52-213ENST00000461743 C1QTNF8P60827 252 aa14.76□□□□□ -0.05
VPS52-213ENST00000461743 DOK7Q18PE1 504 aa14.76□□□□□ -0.05
VPS52-213ENST00000461743 SMC1BQ8NDV3 1235 aa14.76□□□□□ -0.05
VPS52-213ENST00000461743 PANK1Q8TE04 598 aa14.76□□□□□ -0.05
VPS52-213ENST00000461743 DPF2Q92785 391 aa14.76□□□□□ -0.05
VPS52-213ENST00000461743 PUS3Q9BZE2 481 aaKnown RBP14.76□□□□□ -0.05
VPS52-213ENST00000461743 TAF1DQ9H5J8 278 aaPredicted RBP14.76□□□□□ -0.05
VPS52-213ENST00000461743 GPRC5DQ9NZD1 345 aa14.76□□□□□ -0.05
VPS52-213ENST00000461743 PSMD14O00487 310 aa14.75□□□□□ -0.05
VPS52-213ENST00000461743 TAF5LO75529 589 aa14.75□□□□□ -0.05
VPS52-213ENST00000461743 PDE8BO95263 885 aa14.75□□□□□ -0.05
VPS52-213ENST00000461743 CENPBP07199 599 aaPredicted RBP14.75□□□□□ -0.05
VPS52-213ENST00000461743 VIL1P09327 827 aaKnown RBP14.75□□□□□ -0.05
VPS52-213ENST00000461743 MMP14P50281 582 aa14.75□□□□□ -0.05
VPS52-213ENST00000461743 PUM3Q15397 648 aaKnown RBP14.75□□□□□ -0.05
VPS52-213ENST00000461743 LRRC24Q50LG9 513 aa14.75□□□□□ -0.05
VPS52-213ENST00000461743 LDHDQ86WU2 507 aa14.75□□□□□ -0.05
VPS52-213ENST00000461743 AGBL3Q8NEM8 1001 aa14.75□□□□□ -0.05
VPS52-213ENST00000461743 KLHDC4Q8TBB5 520 aa14.75□□□□□ -0.05
VPS52-213ENST00000461743 USP17L3A6NCW0 530 aa14.74□□□□□ -0.05
VPS52-213ENST00000461743 USP17L4A6NCW7 530 aa14.74□□□□□ -0.05
VPS52-213ENST00000461743 KLRK1P26718 216 aa14.74□□□□□ -0.05
VPS52-213ENST00000461743 GMPSP49915 693 aaPredicted RBP14.74□□□□□ -0.05
VPS52-213ENST00000461743 STRIP1Q5VSL9 837 aa14.74□□□□□ -0.05
VPS52-213ENST00000461743 USP50Q70EL3 339 aaPredicted RBP14.74□□□□□ -0.05
VPS52-213ENST00000461743 USP17L1Q7RTZ2 530 aa14.74□□□□□ -0.05
VPS52-213ENST00000461743 ATG9AQ7Z3C6 839 aa14.74□□□□□ -0.05
VPS52-213ENST00000461743 HELBQ8NG08 1087 aaPredicted RBP14.74□□□□□ -0.05
VPS52-213ENST00000461743 ADARB2Q9NS39 739 aaKnown RBP14.74□□□□□ -0.05
VPS52-213ENST00000461743 IL1R1P14778 569 aa14.73□□□□□ -0.05
VPS52-213ENST00000461743 POLA2Q14181 598 aa14.73□□□□□ -0.05
VPS52-213ENST00000461743 RSBN1LQ6PCB5 846 aaPredicted RBP14.73□□□□□ -0.05
VPS52-213ENST00000461743 TXNRD3Q86VQ6 643 aa14.73□□□□□ -0.05
VPS52-213ENST00000461743 SSH3Q8TE77 659 aa14.73□□□□□ -0.05
VPS52-213ENST00000461743 WTIPA6NIX2 430 aaPredicted RBP14.72□□□□□ -0.05
VPS52-213ENST00000461743 ZBTB22O15209 634 aa14.72□□□□□ -0.05
VPS52-213ENST00000461743 PLIN1O60240 522 aa14.72□□□□□ -0.05
VPS52-213ENST00000461743 IFIT1P09914 478 aaKnown RBP14.72□□□□□ -0.05
VPS52-213ENST00000461743 SLC5A1P13866 664 aa14.72□□□□□ -0.05
VPS52-213ENST00000461743 FGFR2P21802 821 aa14.72□□□□□ -0.05
VPS52-213ENST00000461743 FKBP1AP62942 108 aaKnown RBP14.72□□□□□ -0.05
VPS52-213ENST00000461743 LPIN2Q92539 896 aa14.72□□□□□ -0.05
VPS52-213ENST00000461743 SIL1Q9H173 461 aa14.72□□□□□ -0.05
VPS52-213ENST00000461743 CD209Q9NNX6 404 aa14.72□□□□□ -0.05
VPS52-213ENST00000461743 MAST2Q6P0Q8 1798 aa14.71□□□□□ -0.05
VPS52-213ENST00000461743 H7C1D1 291 aa14.71□□□□□ -0.05
VPS52-213ENST00000461743 RRP1P56182 461 aaKnown RBP14.71□□□□□ -0.05
VPS52-213ENST00000461743 ATP8B2P98198 1209 aa14.71□□□□□ -0.05
VPS52-213ENST00000461743 CAVIN4Q5BKX8 364 aa14.71□□□□□ -0.05
VPS52-213ENST00000461743 DACT2Q5SW24 774 aa14.71□□□□□ -0.05
VPS52-213ENST00000461743 CHADLQ6NUI6 762 aa14.71□□□□□ -0.05
VPS52-213ENST00000461743 CEP126Q9P2H0 1117 aa14.71□□□□□ -0.05
VPS52-213ENST00000461743 COG6Q9Y2V7 657 aa14.71□□□□□ -0.05
VPS52-213ENST00000461743 PNMA6EA0A0J9YXQ4 647 aa14.7□□□□□ -0.06
VPS52-213ENST00000461743 SNAP23O00161 211 aa14.7□□□□□ -0.06
VPS52-213ENST00000461743 HIBADHP31937 336 aaKnown RBP14.7□□□□□ -0.06
VPS52-213ENST00000461743 EPS15P42566 896 aa14.7□□□□□ -0.06
VPS52-213ENST00000461743 ATP2B3Q16720 1220 aa14.7□□□□□ -0.06
VPS52-213ENST00000461743 CEP85Q6P2H3 762 aa14.7□□□□□ -0.06
VPS52-213ENST00000461743 MICALL2Q8IY33 904 aa14.7□□□□□ -0.06
VPS52-213ENST00000461743 GMLQ99445 158 aa14.7□□□□□ -0.06
VPS52-213ENST00000461743 ZBTB40Q9NUA8 1239 aa14.7□□□□□ -0.06
VPS52-213ENST00000461743 CNOT7Q9UIV1 285 aaKnown RBP14.7□□□□□ -0.06
VPS52-213ENST00000461743 PA2G4Q9UQ80 394 aaKnown RBP14.7□□□□□ -0.06
VPS52-213ENST00000461743 FAM205AQ6ZU69 1335 aa14.69□□□□□ -0.06
VPS52-213ENST00000461743 AKAP11Q9UKA4 1901 aa14.69□□□□□ -0.06
VPS52-213ENST00000461743 ZNF280AP59817 542 aaPredicted RBP14.69□□□□□ -0.06
VPS52-213ENST00000461743 EAPPQ56P03 285 aaPredicted RBP14.69□□□□□ -0.06
VPS52-213ENST00000461743 TTLL5Q6EMB2 1281 aa14.69□□□□□ -0.06
VPS52-213ENST00000461743 FBXO33Q7Z6M2 555 aa14.69□□□□□ -0.06
VPS52-213ENST00000461743 VPS37DQ86XT2 251 aa14.69□□□□□ -0.06
VPS52-213ENST00000461743 ZC3H15Q8WU90 426 aaKnown RBP14.69□□□□□ -0.06
VPS52-213ENST00000461743 FAM84BQ96KN1 310 aaPredicted RBP14.69□□□□□ -0.06
VPS52-213ENST00000461743 C1orf115Q9H7X2 142 aa14.69□□□□□ -0.06
VPS52-213ENST00000461743 KCNQ5Q9NR82 932 aa14.69□□□□□ -0.06
VPS52-213ENST00000461743 AKAP2Q9Y2D5 859 aa14.69□□□□□ -0.06
VPS52-213ENST00000461743 ZBTB12Q9Y330 459 aaPredicted RBP14.69□□□□□ -0.06
VPS52-213ENST00000461743 HMMRO75330 724 aa14.68□□□□□ -0.06
VPS52-213ENST00000461743 SASH1O94885 1247 aa14.68□□□□□ -0.06
VPS52-213ENST00000461743 HSPA6P17066 643 aa14.68□□□□□ -0.06
VPS52-213ENST00000461743 G3BP1Q13283 466 aaKnown RBP eCLIP14.68□□□□□ -0.06
VPS52-213ENST00000461743 RPAP2Q8IXW5 612 aaPredicted RBP14.68□□□□□ -0.06
VPS52-213ENST00000461743 TDRD7Q8NHU6 1098 aaKnown RBP14.68□□□□□ -0.06
VPS52-213ENST00000461743 NOP58Q9Y2X3 529 aaKnown RBP14.68□□□□□ -0.06
VPS52-213ENST00000461743 MYH2Q9UKX2 1941 aa14.68□□□□□ -0.06
VPS52-213ENST00000461743 CEP350Q5VT06 3117 aa14.67□□□□□ -0.06
VPS52-213ENST00000461743 USP17L8P0C7I0 530 aa14.67□□□□□ -0.06
VPS52-213ENST00000461743 GYG1P46976 350 aa14.67□□□□□ -0.06
VPS52-213ENST00000461743 GTF2IP78347 998 aa14.67□□□□□ -0.06
VPS52-213ENST00000461743 C20orf194Q5TEA3 1177 aa14.67□□□□□ -0.06
VPS52-213ENST00000461743 TBC1D22AQ8WUA7 517 aa14.67□□□□□ -0.06
VPS52-213ENST00000461743 FBXW7Q969H0 707 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms