RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	KIAA2012	Q0VF49	1180 aa		11.1	□□□□□ -0.63
RFX3-209	ENST00000451859	FLII	Q13045	1269 aa		11.1	□□□□□ -0.63
RFX3-209	ENST00000451859	CCDC152	Q4G0S7	254 aa		11.1	□□□□□ -0.63
RFX3-209	ENST00000451859	TMC4	Q7Z404	712 aa		11.1	□□□□□ -0.63
RFX3-209	ENST00000451859	MICALL2	Q8IY33	904 aa		11.1	□□□□□ -0.63
RFX3-209	ENST00000451859	RTFDC1	Q9BY42	306 aa	Predicted RBP	11.1	□□□□□ -0.63
RFX3-209	ENST00000451859	ZNRF3	Q9ULT6	936 aa		11.1	□□□□□ -0.63
RFX3-209	ENST00000451859	NEURL1B	A8MQ27	555 aa		11.09	□□□□□ -0.63
RFX3-209	ENST00000451859	HSP90B1	P14625	803 aa	Known RBP	11.09	□□□□□ -0.63
RFX3-209	ENST00000451859	GMPS	P49915	693 aa	Predicted RBP	11.09	□□□□□ -0.63
RFX3-209	ENST00000451859	RPS8	P62241	208 aa	Known RBP	11.09	□□□□□ -0.63
RFX3-209	ENST00000451859	CIAPIN1	Q6FI81	312 aa		11.09	□□□□□ -0.63
RFX3-209	ENST00000451859	PNMA8A	Q86V59	439 aa	Predicted RBP	11.09	□□□□□ -0.63
RFX3-209	ENST00000451859	BCL2L13	Q9BXK5	485 aa		11.09	□□□□□ -0.63
RFX3-209	ENST00000451859	DBNDD1	Q9H9R9	158 aa		11.09	□□□□□ -0.63
RFX3-209	ENST00000451859	ANKIB1	Q9P2G1	1089 aa		11.09	□□□□□ -0.63
RFX3-209	ENST00000451859	MKRN1	Q9UHC7	482 aa	Known RBP	11.09	□□□□□ -0.63
RFX3-209	ENST00000451859	YDJC	A8MPS7	323 aa		11.08	□□□□□ -0.64
RFX3-209	ENST00000451859	VAMP4	O75379	141 aa		11.08	□□□□□ -0.64
RFX3-209	ENST00000451859	UFL1	O94874	794 aa		11.08	□□□□□ -0.64
RFX3-209	ENST00000451859	CTSW	P56202	376 aa		11.08	□□□□□ -0.64
RFX3-209	ENST00000451859	WASHC4	Q2M389	1173 aa		11.08	□□□□□ -0.64
RFX3-209	ENST00000451859	UBE3B	Q7Z3V4	1068 aa		11.08	□□□□□ -0.64
RFX3-209	ENST00000451859	VPS33B	Q9H267	617 aa		11.08	□□□□□ -0.64
RFX3-209	ENST00000451859	MYH16	Q9H6N6	1097 aa		11.08	□□□□□ -0.64
RFX3-209	ENST00000451859	POLL	Q9UGP5	575 aa		11.08	□□□□□ -0.64
RFX3-209	ENST00000451859	CDHR2	Q9BYE9	1310 aa		11.08	□□□□□ -0.64
RFX3-209	ENST00000451859	SHTN1	A0MZ66	631 aa		11.07	□□□□□ -0.64
RFX3-209	ENST00000451859	ANKRD18A	Q8IVF6	992 aa		11.07	□□□□□ -0.64
RFX3-209	ENST00000451859	CNTROB	Q8N137	903 aa		11.07	□□□□□ -0.64
RFX3-209	ENST00000451859	TBC1D16	Q8TBP0	767 aa		11.07	□□□□□ -0.64
RFX3-209	ENST00000451859	DNAAF4	Q8WXU2	420 aa		11.07	□□□□□ -0.64
RFX3-209	ENST00000451859	GREM2	Q9H772	168 aa		11.07	□□□□□ -0.64
RFX3-209	ENST00000451859	GPRC5D	Q9NZD1	345 aa		11.07	□□□□□ -0.64
RFX3-209	ENST00000451859	ZNF646	O15015	1829 aa	Predicted RBP	11.07	□□□□□ -0.64
RFX3-209	ENST00000451859	PASK	Q96RG2	1323 aa		11.07	□□□□□ -0.64
RFX3-209	ENST00000451859		F6X3S4	739 aa		11.06	□□□□□ -0.64
RFX3-209	ENST00000451859	ECE2	O60344	883 aa		11.06	□□□□□ -0.64
RFX3-209	ENST00000451859	ITGBL1	O95965	494 aa	Predicted RBP	11.06	□□□□□ -0.64
RFX3-209	ENST00000451859	FMR1	Q06787	632 aa	Known RBP eCLIP	11.06	□□□□□ -0.64
RFX3-209	ENST00000451859	GCKR	Q14397	625 aa		11.06	□□□□□ -0.64
RFX3-209	ENST00000451859	TNIP1	Q15025	636 aa		11.06	□□□□□ -0.64
RFX3-209	ENST00000451859	EYA3	Q99504	573 aa		11.06	□□□□□ -0.64
RFX3-209	ENST00000451859	GGA1	Q9UJY5	639 aa		11.06	□□□□□ -0.64
RFX3-209	ENST00000451859	TMEM88B	A6NKF7	163 aa		11.05	□□□□□ -0.64
RFX3-209	ENST00000451859	PSMD14	O00487	310 aa		11.05	□□□□□ -0.64
RFX3-209	ENST00000451859	USP50	Q70EL3	339 aa	Predicted RBP	11.05	□□□□□ -0.64
RFX3-209	ENST00000451859	JMY	Q8N9B5	988 aa		11.05	□□□□□ -0.64
RFX3-209	ENST00000451859	TTLL11	Q8NHH1	800 aa		11.05	□□□□□ -0.64
RFX3-209	ENST00000451859	CDC5L	Q99459	802 aa	Known RBP	11.05	□□□□□ -0.64
RFX3-209	ENST00000451859	KCNQ5	Q9NR82	932 aa		11.05	□□□□□ -0.64
RFX3-209	ENST00000451859	ADARB2	Q9NS39	739 aa	Known RBP	11.05	□□□□□ -0.64
RFX3-209	ENST00000451859	TRAF5	O00463	557 aa		11.04	□□□□□ -0.64
RFX3-209	ENST00000451859	FAM161A	Q3B820	660 aa		11.04	□□□□□ -0.64
RFX3-209	ENST00000451859	SLC4A10	Q6U841	1118 aa		11.04	□□□□□ -0.64
RFX3-209	ENST00000451859	LINS1	Q8NG48	757 aa		11.04	□□□□□ -0.64
RFX3-209	ENST00000451859	TRPM4	Q8TD43	1214 aa		11.04	□□□□□ -0.64
RFX3-209	ENST00000451859	ZC3H12C	Q9C0D7	883 aa	Known RBP	11.04	□□□□□ -0.64
RFX3-209	ENST00000451859	CNOT7	Q9UIV1	285 aa	Known RBP	11.04	□□□□□ -0.64
RFX3-209	ENST00000451859	XDH	P47989	1333 aa		11.04	□□□□□ -0.64
RFX3-209	ENST00000451859	CNTNAP1	P78357	1384 aa		11.03	□□□□□ -0.64
RFX3-209	ENST00000451859	RTL9	Q8NET4	1388 aa		11.03	□□□□□ -0.64
RFX3-209	ENST00000451859	WTIP	A6NIX2	430 aa	Predicted RBP	11.03	□□□□□ -0.64
RFX3-209	ENST00000451859		H7C1D1	291 aa		11.03	□□□□□ -0.64
RFX3-209	ENST00000451859		H7C1W4	665 aa		11.03	□□□□□ -0.64
RFX3-209	ENST00000451859	HSPA1A	P0DMV8	641 aa	Known RBP	11.03	□□□□□ -0.64
RFX3-209	ENST00000451859	HSPA1B	P0DMV9	641 aa	Known RBP	11.03	□□□□□ -0.64
RFX3-209	ENST00000451859	GRM1	Q13255	1194 aa		11.03	□□□□□ -0.64
RFX3-209	ENST00000451859	MS4A4A	Q96JQ5	239 aa		11.03	□□□□□ -0.64
RFX3-209	ENST00000451859	GLIS2	Q9BZE0	524 aa	Predicted RBP	11.03	□□□□□ -0.64
RFX3-209	ENST00000451859	PODXL2	Q9NZ53	605 aa		11.03	□□□□□ -0.64
RFX3-209	ENST00000451859	ABT1	Q9ULW3	272 aa	Known RBP	11.03	□□□□□ -0.64
RFX3-209	ENST00000451859	CHMP3	Q9Y3E7	222 aa		11.03	□□□□□ -0.64
RFX3-209	ENST00000451859	ITGA6	P23229	1130 aa		11.02	□□□□□ -0.65
RFX3-209	ENST00000451859	IGHMBP2	P38935	993 aa	Known RBP	11.02	□□□□□ -0.65
RFX3-209	ENST00000451859	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	11.02	□□□□□ -0.65
RFX3-209	ENST00000451859	RBM26	Q5T8P6	1007 aa	Known RBP	11.02	□□□□□ -0.65
RFX3-209	ENST00000451859	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.02	□□□□□ -0.65
RFX3-209	ENST00000451859	SAMD7	Q7Z3H4	446 aa		11.02	□□□□□ -0.65
RFX3-209	ENST00000451859	FBXW7	Q969H0	707 aa		11.02	□□□□□ -0.65
RFX3-209	ENST00000451859	ZNF408	Q9H9D4	720 aa		11.02	□□□□□ -0.65
RFX3-209	ENST00000451859	ZNF521	Q96K83	1311 aa		11.02	□□□□□ -0.65
RFX3-209	ENST00000451859	EGFR	P00533	1210 aa		11.01	□□□□□ -0.65
RFX3-209	ENST00000451859	ATP2B4	P23634	1241 aa		11.01	□□□□□ -0.65
RFX3-209	ENST00000451859	VEGFB	P49765	207 aa		11.01	□□□□□ -0.65
RFX3-209	ENST00000451859	HIRA	P54198	1017 aa	Predicted RBP	11.01	□□□□□ -0.65
RFX3-209	ENST00000451859	CASP7	P55210	303 aa		11.01	□□□□□ -0.65
RFX3-209	ENST00000451859	BEND3	Q5T5X7	828 aa		11.01	□□□□□ -0.65
RFX3-209	ENST00000451859	MPHOSPH8	Q99549	860 aa		11.01	□□□□□ -0.65
RFX3-209	ENST00000451859	MINPP1	Q9UNW1	487 aa		11.01	□□□□□ -0.65
RFX3-209	ENST00000451859	MYH13	Q9UKX3	1938 aa		11.01	□□□□□ -0.65
RFX3-209	ENST00000451859	CCT4	P50991	539 aa	Known RBP	11	□□□□□ -0.65
RFX3-209	ENST00000451859	PLA2G12B	Q9BX93	195 aa		11	□□□□□ -0.65
RFX3-209	ENST00000451859	BSDC1	Q9NW68	430 aa	Predicted RBP	11	□□□□□ -0.65
RFX3-209	ENST00000451859	ECM29	Q5VYK3	1845 aa		11	□□□□□ -0.65
RFX3-209	ENST00000451859	ANKRD18B	A2A2Z9	1011 aa		10.99	□□□□□ -0.65
RFX3-209	ENST00000451859	GRM8	O00222	908 aa		10.99	□□□□□ -0.65
RFX3-209	ENST00000451859	CELF2	O95319	508 aa	Known RBP	10.99	□□□□□ -0.65
RFX3-209	ENST00000451859	KLRK1	P26718	216 aa		10.99	□□□□□ -0.65
RFX3-209	ENST00000451859	KCNJ4	P48050	445 aa		10.99	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms