RNA–Protein interactions for RNA: ENST00000431283.1

PTPN4-204, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 630 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-204ENST00000431283 CNTN3Q9P232 1028 aa9.35□□□□□ -0.91
PTPN4-204ENST00000431283 KLHL23Q8NBE8 558 aa9.34□□□□□ -0.91
PTPN4-204ENST00000431283 GGNBP2Q9H3C7 697 aa9.34□□□□□ -0.91
PTPN4-204ENST00000431283 POLIQ9UNA4 740 aa9.34□□□□□ -0.91
PTPN4-204ENST00000431283 FSCN2O14926 492 aa9.33□□□□□ -0.92
PTPN4-204ENST00000431283 FKBP4Q02790 459 aaKnown RBP eCLIP9.33□□□□□ -0.92
PTPN4-204ENST00000431283 ACAD11Q709F0 780 aa9.33□□□□□ -0.92
PTPN4-204ENST00000431283 CARD10Q9BWT7 1032 aa9.33□□□□□ -0.92
PTPN4-204ENST00000431283 SH2B1Q9NRF2 756 aaPredicted RBP9.33□□□□□ -0.92
PTPN4-204ENST00000431283 A6NHS1 94 aa9.32□□□□□ -0.92
PTPN4-204ENST00000431283 PHACTR2O75167 634 aa9.32□□□□□ -0.92
PTPN4-204ENST00000431283 ERICH6Q7L0X2 663 aa9.32□□□□□ -0.92
PTPN4-204ENST00000431283 POP1Q99575 1024 aaKnown RBP9.32□□□□□ -0.92
PTPN4-204ENST00000431283 CEP41Q9BYV8 373 aa9.32□□□□□ -0.92
PTPN4-204ENST00000431283 SEC31BQ9NQW1 1179 aa9.32□□□□□ -0.92
PTPN4-204ENST00000431283 SALL4Q9UJQ4 1053 aa9.32□□□□□ -0.92
PTPN4-204ENST00000431283 PDE2AO00408 941 aaPredicted RBP9.31□□□□□ -0.92
PTPN4-204ENST00000431283 DUOXA2Q1HG44 320 aa9.31□□□□□ -0.92
PTPN4-204ENST00000431283 PRR23CQ6ZRP0 262 aa9.31□□□□□ -0.92
PTPN4-204ENST00000431283 DZIP1LQ8IYY4 767 aaKnown RBP9.31□□□□□ -0.92
PTPN4-204ENST00000431283 AGGF1Q8N302 714 aaeCLIP9.31□□□□□ -0.92
PTPN4-204ENST00000431283 GALNT11Q8NCW6 608 aa9.31□□□□□ -0.92
PTPN4-204ENST00000431283 USTQ9Y2C2 406 aa9.31□□□□□ -0.92
PTPN4-204ENST00000431283 H3BRJ5 948 aa9.3□□□□□ -0.92
PTPN4-204ENST00000431283 EDN3P14138 238 aa9.3□□□□□ -0.92
PTPN4-204ENST00000431283 EPHA1P21709 976 aa9.3□□□□□ -0.92
PTPN4-204ENST00000431283 ARL4DP49703 201 aa9.3□□□□□ -0.92
PTPN4-204ENST00000431283 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.3□□□□□ -0.92
PTPN4-204ENST00000431283 NBPF11Q86T75 865 aa9.3□□□□□ -0.92
PTPN4-204ENST00000431283 SNX29Q8TEQ0 813 aa9.3□□□□□ -0.92
PTPN4-204ENST00000431283 ADAM19Q9H013 955 aa9.3□□□□□ -0.92
PTPN4-204ENST00000431283 ZFP64Q9NPA5 681 aa9.3□□□□□ -0.92
PTPN4-204ENST00000431283 CARNS1A5YM72 827 aa9.29□□□□□ -0.92
PTPN4-204ENST00000431283 NPR3P17342 541 aa9.29□□□□□ -0.92
PTPN4-204ENST00000431283 PIP4K2BP78356 416 aa9.29□□□□□ -0.92
PTPN4-204ENST00000431283 WNT8BQ93098 351 aa9.29□□□□□ -0.92
PTPN4-204ENST00000431283 ANO2Q9NQ90 1003 aa9.29□□□□□ -0.92
PTPN4-204ENST00000431283 DZANK1Q9NVP4 752 aa9.29□□□□□ -0.92
PTPN4-204ENST00000431283 TNFRSF21O75509 655 aa9.28□□□□□ -0.92
PTPN4-204ENST00000431283 ZNF211Q13398 564 aaPredicted RBP9.28□□□□□ -0.92
PTPN4-204ENST00000431283 FOXD4L6Q3SYB3 417 aaPredicted RBP9.28□□□□□ -0.92
PTPN4-204ENST00000431283 ARTNQ5T4W7 220 aa9.28□□□□□ -0.92
PTPN4-204ENST00000431283 FOXD4L3Q6VB84 417 aaPredicted RBP9.28□□□□□ -0.92
PTPN4-204ENST00000431283 OSMRQ99650 979 aa9.28□□□□□ -0.92
PTPN4-204ENST00000431283 DHX15O43143 795 aaKnown RBP9.27□□□□□ -0.93
PTPN4-204ENST00000431283 ACPPP15309 386 aa9.27□□□□□ -0.93
PTPN4-204ENST00000431283 SLC51AQ86UW1 340 aa9.27□□□□□ -0.93
PTPN4-204ENST00000431283 SLC7A3Q8WY07 619 aa9.27□□□□□ -0.93
PTPN4-204ENST00000431283 OSGEPQ9NPF4 335 aa9.27□□□□□ -0.93
PTPN4-204ENST00000431283 WISP1O95388 367 aa9.26□□□□□ -0.93
PTPN4-204ENST00000431283 LRP8Q14114 963 aa9.26□□□□□ -0.93
PTPN4-204ENST00000431283 PHLDB3Q6NSJ2 640 aa9.26□□□□□ -0.93
PTPN4-204ENST00000431283 Q6ZS46 218 aa9.26□□□□□ -0.93
PTPN4-204ENST00000431283 TMEM102Q8N9M5 508 aaPredicted RBP9.26□□□□□ -0.93
PTPN4-204ENST00000431283 KLHDC7BQ96G42 594 aa9.26□□□□□ -0.93
PTPN4-204ENST00000431283 CHRDQ9H2X0 955 aa9.26□□□□□ -0.93
PTPN4-204ENST00000431283 KCNK4Q9NYG8 393 aa9.26□□□□□ -0.93
PTPN4-204ENST00000431283 STOML1Q9UBI4 398 aa9.26□□□□□ -0.93
PTPN4-204ENST00000431283 EREGO14944 169 aa9.25□□□□□ -0.93
PTPN4-204ENST00000431283 SART1O43290 800 aaKnown RBP9.25□□□□□ -0.93
PTPN4-204ENST00000431283 TRPA1O75762 1119 aa9.25□□□□□ -0.93
PTPN4-204ENST00000431283 FSTP19883 344 aa9.25□□□□□ -0.93
PTPN4-204ENST00000431283 GLYCTKQ8IVS8 523 aa9.25□□□□□ -0.93
PTPN4-204ENST00000431283 BSNDQ8WZ55 320 aa9.25□□□□□ -0.93
PTPN4-204ENST00000431283 UTP4Q969X6 686 aaKnown RBP9.25□□□□□ -0.93
PTPN4-204ENST00000431283 ARID3AQ99856 593 aa9.25□□□□□ -0.93
PTPN4-204ENST00000431283 AMOTL2Q9Y2J4 779 aa9.25□□□□□ -0.93
PTPN4-204ENST00000431283 RAXQ9Y2V3 346 aa9.25□□□□□ -0.93
PTPN4-204ENST00000431283 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.25□□□□□ -0.93
PTPN4-204ENST00000431283 GSC2O15499 205 aa9.24□□□□□ -0.93
PTPN4-204ENST00000431283 DDX3YO15523 660 aaKnown RBP9.24□□□□□ -0.93
PTPN4-204ENST00000431283 FZD6O60353 706 aa9.24□□□□□ -0.93
PTPN4-204ENST00000431283 NLRP12P59046 1061 aa9.24□□□□□ -0.93
PTPN4-204ENST00000431283 C19orf57Q0VDD7 668 aa9.24□□□□□ -0.93
PTPN4-204ENST00000431283 UVSSAQ2YD98 709 aa9.24□□□□□ -0.93
PTPN4-204ENST00000431283 ADAMTSL4Q6UY14 1074 aa9.24□□□□□ -0.93
PTPN4-204ENST00000431283 ASAP3Q8TDY4 903 aa9.24□□□□□ -0.93
PTPN4-204ENST00000431283 ZKSCAN3Q9BRR0 538 aa9.24□□□□□ -0.93
PTPN4-204ENST00000431283 EGFL7Q9UHF1 273 aa9.24□□□□□ -0.93
PTPN4-204ENST00000431283 FOXD3Q9UJU5 478 aaPredicted RBP9.24□□□□□ -0.93
PTPN4-204ENST00000431283 BRPF3Q9ULD4 1205 aa9.24□□□□□ -0.93
PTPN4-204ENST00000431283 H3BRB1 525 aa9.23□□□□□ -0.93
PTPN4-204ENST00000431283 NFKBIEO00221 500 aa9.23□□□□□ -0.93
PTPN4-204ENST00000431283 PDE4CQ08493 712 aa9.23□□□□□ -0.93
PTPN4-204ENST00000431283 IKBKEQ14164 716 aa9.23□□□□□ -0.93
PTPN4-204ENST00000431283 UBASH3BQ8TF42 649 aa9.23□□□□□ -0.93
PTPN4-204ENST00000431283 HHIPQ96QV1 700 aa9.23□□□□□ -0.93
PTPN4-204ENST00000431283 TUT1Q9H6E5 874 aaKnown RBP9.23□□□□□ -0.93
PTPN4-204ENST00000431283 CCDC87Q9NVE4 849 aa9.23□□□□□ -0.93
PTPN4-204ENST00000431283 RNF112Q9ULX5 631 aa9.23□□□□□ -0.93
PTPN4-204ENST00000431283 NEFLP07196 543 aa9.22□□□□□ -0.93
PTPN4-204ENST00000431283 ANKRD34AQ69YU3 496 aa9.22□□□□□ -0.93
PTPN4-204ENST00000431283 FDX2Q6P4F2 183 aa9.22□□□□□ -0.93
PTPN4-204ENST00000431283 KIAA1211Q6ZU35 1233 aa9.22□□□□□ -0.93
PTPN4-204ENST00000431283 GJD3Q8N144 294 aa9.22□□□□□ -0.93
PTPN4-204ENST00000431283 FOXD4L4Q8WXT5 416 aaPredicted RBP9.22□□□□□ -0.93
PTPN4-204ENST00000431283 NXPE3Q969Y0 559 aa9.22□□□□□ -0.93
PTPN4-204ENST00000431283 UBL7Q96S82 380 aaPredicted RBP9.22□□□□□ -0.93
PTPN4-204ENST00000431283 RNF208Q9H0X6 261 aa9.22□□□□□ -0.93
PTPN4-204ENST00000431283 NDUFB5O43674 189 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms