RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 BCL2L12Q9HB09 334 aa7.28□□□□□ -1.24
HMGB3-202ENST00000419110 GPR108Q9NPR9 543 aa7.28□□□□□ -1.24
HMGB3-202ENST00000419110 CNNM1Q9NRU3 951 aa7.28□□□□□ -1.24
HMGB3-202ENST00000419110 ECHDC1Q9NTX5 307 aa7.28□□□□□ -1.24
HMGB3-202ENST00000419110 STK32BQ9NY57 414 aa7.28□□□□□ -1.24
HMGB3-202ENST00000419110 TFCP2L1Q9NZI6 479 aa7.28□□□□□ -1.24
HMGB3-202ENST00000419110 STAP2Q9UGK3 403 aa7.28□□□□□ -1.24
HMGB3-202ENST00000419110 TAOK2Q9UL54 1235 aa7.28□□□□□ -1.24
HMGB3-202ENST00000419110 FPGT-TNNI3KV9GXZ4 949 aa7.28□□□□□ -1.24
HMGB3-202ENST00000419110 MROH5Q6ZUA9 1318 aa7.27□□□□□ -1.24
HMGB3-202ENST00000419110 TRIM6-TRIM34B2RNG4 842 aa7.27□□□□□ -1.25
HMGB3-202ENST00000419110 SASH1O94885 1247 aa7.27□□□□□ -1.25
HMGB3-202ENST00000419110 CSF1RP07333 972 aa7.27□□□□□ -1.25
HMGB3-202ENST00000419110 HCLS1P14317 486 aaPredicted RBP7.27□□□□□ -1.25
HMGB3-202ENST00000419110 METTL24Q5JXM2 366 aa7.27□□□□□ -1.25
HMGB3-202ENST00000419110 TSHZ3Q63HK5 1081 aa7.27□□□□□ -1.25
HMGB3-202ENST00000419110 TTLL11Q8NHH1 800 aa7.27□□□□□ -1.25
HMGB3-202ENST00000419110 MPHOSPH8Q99549 860 aa7.27□□□□□ -1.25
HMGB3-202ENST00000419110 AKAP2Q9Y2D5 859 aa7.27□□□□□ -1.25
HMGB3-202ENST00000419110 BRCA1P38398 1863 aaKnown RBP7.27□□□□□ -1.25
HMGB3-202ENST00000419110 NAV1Q8NEY1 1877 aa7.26□□□□□ -1.25
HMGB3-202ENST00000419110 FAM205CA6NFA0 338 aa7.26□□□□□ -1.25
HMGB3-202ENST00000419110 GYS1P13807 737 aa7.26□□□□□ -1.25
HMGB3-202ENST00000419110 HOXB3P14651 431 aaPredicted RBP7.26□□□□□ -1.25
HMGB3-202ENST00000419110 MFAP1P55081 439 aaKnown RBP7.26□□□□□ -1.25
HMGB3-202ENST00000419110 TFCP2Q12800 502 aa7.26□□□□□ -1.25
HMGB3-202ENST00000419110 NFIXQ14938 502 aa7.26□□□□□ -1.25
HMGB3-202ENST00000419110 ATP2B3Q16720 1220 aa7.26□□□□□ -1.25
HMGB3-202ENST00000419110 ERFEQ4G0M1 354 aa7.26□□□□□ -1.25
HMGB3-202ENST00000419110 TPTE2Q6XPS3 522 aa7.26□□□□□ -1.25
HMGB3-202ENST00000419110 TBC1D9Q6ZT07 1266 aa7.26□□□□□ -1.25
HMGB3-202ENST00000419110 AMIGO3Q86WK7 504 aa7.26□□□□□ -1.25
HMGB3-202ENST00000419110 MICALL2Q8IY33 904 aa7.26□□□□□ -1.25
HMGB3-202ENST00000419110 PI4K2BQ8TCG2 481 aa7.26□□□□□ -1.25
HMGB3-202ENST00000419110 ZNF594Q96JF6 807 aaPredicted RBP7.26□□□□□ -1.25
HMGB3-202ENST00000419110 HS3ST6Q96QI5 342 aa7.26□□□□□ -1.25
HMGB3-202ENST00000419110 CEP126Q9P2H0 1117 aa7.26□□□□□ -1.25
HMGB3-202ENST00000419110 DBNLQ9UJU6 430 aaKnown RBP7.26□□□□□ -1.25
HMGB3-202ENST00000419110 RBM19Q9Y4C8 960 aaKnown RBP7.26□□□□□ -1.25
HMGB3-202ENST00000419110 PSME4Q14997 1843 aa7.26□□□□□ -1.25
HMGB3-202ENST00000419110 PNPLA7Q6ZV29 1317 aa7.26□□□□□ -1.25
HMGB3-202ENST00000419110 RAD50Q92878 1312 aa7.26□□□□□ -1.25
HMGB3-202ENST00000419110 A0A1B0GUL7 405 aa7.25□□□□□ -1.25
HMGB3-202ENST00000419110 HIP1O00291 1037 aa7.25□□□□□ -1.25
HMGB3-202ENST00000419110 REC8O95072 547 aa7.25□□□□□ -1.25
HMGB3-202ENST00000419110 SLC5A1P13866 664 aa7.25□□□□□ -1.25
HMGB3-202ENST00000419110 SDSP20132 328 aa7.25□□□□□ -1.25
HMGB3-202ENST00000419110 PUM3Q15397 648 aaKnown RBP7.25□□□□□ -1.25
HMGB3-202ENST00000419110 DOK7Q18PE1 504 aa7.25□□□□□ -1.25
HMGB3-202ENST00000419110 LRRC24Q50LG9 513 aa7.25□□□□□ -1.25
HMGB3-202ENST00000419110 GORABQ5T7V8 394 aa7.25□□□□□ -1.25
HMGB3-202ENST00000419110 LDHAL6AQ6ZMR3 332 aa7.25□□□□□ -1.25
HMGB3-202ENST00000419110 ATG9AQ7Z3C6 839 aa7.25□□□□□ -1.25
HMGB3-202ENST00000419110 ANKRD18AQ8IVF6 992 aa7.25□□□□□ -1.25
HMGB3-202ENST00000419110 C16orf71Q8IYS4 520 aaPredicted RBP7.25□□□□□ -1.25
HMGB3-202ENST00000419110 ZNF710Q8N1W2 664 aa7.25□□□□□ -1.25
HMGB3-202ENST00000419110 SYNE4Q8N205 404 aa7.25□□□□□ -1.25
HMGB3-202ENST00000419110 RPGRQ92834 1020 aaKnown RBP7.25□□□□□ -1.25
HMGB3-202ENST00000419110 RILPL2Q969X0 211 aa7.25□□□□□ -1.25
HMGB3-202ENST00000419110 EAF2Q96CJ1 260 aaPredicted RBP7.25□□□□□ -1.25
HMGB3-202ENST00000419110 DDRGK1Q96HY6 314 aa7.25□□□□□ -1.25
HMGB3-202ENST00000419110 MS4A4AQ96JQ5 239 aa7.25□□□□□ -1.25
HMGB3-202ENST00000419110 NLRP3Q96P20 1036 aa7.25□□□□□ -1.25
HMGB3-202ENST00000419110 DIAPH3Q9NSV4 1193 aa7.25□□□□□ -1.25
HMGB3-202ENST00000419110 TLR7Q9NYK1 1049 aaKnown RBP7.25□□□□□ -1.25
HMGB3-202ENST00000419110 POTEB3A0JP26 581 aa7.24□□□□□ -1.25
HMGB3-202ENST00000419110 SF3B3Q15393 1217 aaKnown RBP7.24□□□□□ -1.25
HMGB3-202ENST00000419110 TTC39AQ5SRH9 613 aa7.24□□□□□ -1.25
HMGB3-202ENST00000419110 PRR5LQ6MZQ0 368 aa7.24□□□□□ -1.25
HMGB3-202ENST00000419110 POTEBQ6S5H4 581 aa7.24□□□□□ -1.25
HMGB3-202ENST00000419110 SMIM5Q71RC9 77 aa7.24□□□□□ -1.25
HMGB3-202ENST00000419110 DDX46Q7L014 1031 aaKnown RBP7.24□□□□□ -1.25
HMGB3-202ENST00000419110 SPNS2Q8IVW8 549 aa7.24□□□□□ -1.25
HMGB3-202ENST00000419110 EVI5LQ96CN4 794 aa7.24□□□□□ -1.25
HMGB3-202ENST00000419110 NEUROD6Q96NK8 337 aa7.24□□□□□ -1.25
HMGB3-202ENST00000419110 DBNDD2Q9BQY9 259 aa7.24□□□□□ -1.25
HMGB3-202ENST00000419110 FSD1Q9BTV5 496 aa7.24□□□□□ -1.25
HMGB3-202ENST00000419110 CCDC8Q9H0W5 538 aaPredicted RBP7.24□□□□□ -1.25
HMGB3-202ENST00000419110 ANO8Q9HCE9 1232 aaPredicted RBP7.24□□□□□ -1.25
HMGB3-202ENST00000419110 MYH8P13535 1937 aa7.24□□□□□ -1.25
HMGB3-202ENST00000419110 C10orf71Q711Q0 1435 aa7.24□□□□□ -1.25
HMGB3-202ENST00000419110 CDK5RAP2Q96SN8 1893 aa7.24□□□□□ -1.25
HMGB3-202ENST00000419110 FOCADQ5VW36 1801 aa7.23□□□□□ -1.25
HMGB3-202ENST00000419110 ARFGEF1Q9Y6D6 1849 aa7.23□□□□□ -1.25
HMGB3-202ENST00000419110 POLRMTO00411 1230 aaKnown RBP7.23□□□□□ -1.25
HMGB3-202ENST00000419110 ECM2O94769 699 aaPredicted RBP7.23□□□□□ -1.25
HMGB3-202ENST00000419110 SERPINB2P05120 415 aa7.23□□□□□ -1.25
HMGB3-202ENST00000419110 HOXB1P14653 301 aaPredicted RBP7.23□□□□□ -1.25
HMGB3-202ENST00000419110 ATP5JP18859 108 aa7.23□□□□□ -1.25
HMGB3-202ENST00000419110 MCCP23508 829 aa7.23□□□□□ -1.25
HMGB3-202ENST00000419110 KCNJ4P48050 445 aa7.23□□□□□ -1.25
HMGB3-202ENST00000419110 EN1Q05925 392 aaPredicted RBP7.23□□□□□ -1.25
HMGB3-202ENST00000419110 DDR1Q08345 913 aa7.23□□□□□ -1.25
HMGB3-202ENST00000419110 EZH2Q15910 746 aaKnown RBP7.23□□□□□ -1.25
HMGB3-202ENST00000419110 LRRFIP1Q32MZ4 808 aaKnown RBP7.23□□□□□ -1.25
HMGB3-202ENST00000419110 CCDC158Q5M9N0 1113 aa7.23□□□□□ -1.25
HMGB3-202ENST00000419110 SLC10A5Q5PT55 438 aa7.23□□□□□ -1.25
HMGB3-202ENST00000419110 CCDC125Q86Z20 511 aa7.23□□□□□ -1.25
HMGB3-202ENST00000419110 NLGN1Q8N2Q7 840 aa7.23□□□□□ -1.25
HMGB3-202ENST00000419110 VGLL2Q8N8G2 317 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms