RNA–Protein interactions for RNA: ENST00000409810.6

CHMP3-205, Transcript of charged multivesicular body protein 3, humanhuman

TSL 5

Gene CHMP3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-205ENST00000409810 RBM46Q8TBY0 533 aaKnown RBP13.56□□□□□ -0.24
CHMP3-205ENST00000409810 SIL1Q9H173 461 aa13.56□□□□□ -0.24
CHMP3-205ENST00000409810 POTECB2RU33 542 aa13.55□□□□□ -0.24
CHMP3-205ENST00000409810 PDE8BO95263 885 aa13.55□□□□□ -0.24
CHMP3-205ENST00000409810 EPHX2P34913 555 aa13.55□□□□□ -0.24
CHMP3-205ENST00000409810 IL15P40933 162 aaPredicted RBP13.55□□□□□ -0.24
CHMP3-205ENST00000409810 SCNN1DP51172 638 aa13.55□□□□□ -0.24
CHMP3-205ENST00000409810 PNMA8AQ86V59 439 aaPredicted RBP13.55□□□□□ -0.24
CHMP3-205ENST00000409810 SMC1BQ8NDV3 1235 aa13.55□□□□□ -0.24
CHMP3-205ENST00000409810 TAF1DQ9H5J8 278 aaPredicted RBP13.55□□□□□ -0.24
CHMP3-205ENST00000409810 COG6Q9Y2V7 657 aa13.55□□□□□ -0.24
CHMP3-205ENST00000409810 ZNF609O15014 1411 aa13.55□□□□□ -0.24
CHMP3-205ENST00000409810 USP17L3A6NCW0 530 aa13.54□□□□□ -0.24
CHMP3-205ENST00000409810 USP17L4A6NCW7 530 aa13.54□□□□□ -0.24
CHMP3-205ENST00000409810 IFIT1P09914 478 aaKnown RBP13.54□□□□□ -0.24
CHMP3-205ENST00000409810 KLRK1P26718 216 aa13.54□□□□□ -0.24
CHMP3-205ENST00000409810 GMPSP49915 693 aaPredicted RBP13.54□□□□□ -0.24
CHMP3-205ENST00000409810 C1QTNF8P60827 252 aa13.54□□□□□ -0.24
CHMP3-205ENST00000409810 PUM3Q15397 648 aaKnown RBP13.54□□□□□ -0.24
CHMP3-205ENST00000409810 USP17L1Q7RTZ2 530 aa13.54□□□□□ -0.24
CHMP3-205ENST00000409810 VPS37DQ86XT2 251 aa13.54□□□□□ -0.24
CHMP3-205ENST00000409810 VGLL2Q8N8G2 317 aa13.54□□□□□ -0.24
CHMP3-205ENST00000409810 DPF2Q92785 391 aa13.54□□□□□ -0.24
CHMP3-205ENST00000409810 CD209Q9NNX6 404 aa13.54□□□□□ -0.24
CHMP3-205ENST00000409810 GPRC5DQ9NZD1 345 aa13.54□□□□□ -0.24
CHMP3-205ENST00000409810 CEP126Q9P2H0 1117 aa13.54□□□□□ -0.24
CHMP3-205ENST00000409810 ZNF646O15015 1829 aaPredicted RBP13.54□□□□□ -0.24
CHMP3-205ENST00000409810 MYO3BQ8WXR4 1341 aa13.54□□□□□ -0.24
CHMP3-205ENST00000409810 WTIPA6NIX2 430 aaPredicted RBP13.53□□□□□ -0.24
CHMP3-205ENST00000409810 H7C1D1 291 aa13.53□□□□□ -0.24
CHMP3-205ENST00000409810 SNAP23O00161 211 aa13.53□□□□□ -0.24
CHMP3-205ENST00000409810 VIL1P09327 827 aaKnown RBP13.53□□□□□ -0.24
CHMP3-205ENST00000409810 SLC5A1P13866 664 aa13.53□□□□□ -0.24
CHMP3-205ENST00000409810 ATP8B2P98198 1209 aa13.53□□□□□ -0.24
CHMP3-205ENST00000409810 FSTL1Q12841 308 aa13.53□□□□□ -0.24
CHMP3-205ENST00000409810 EAPPQ56P03 285 aaPredicted RBP13.53□□□□□ -0.24
CHMP3-205ENST00000409810 CAVIN4Q5BKX8 364 aa13.53□□□□□ -0.24
CHMP3-205ENST00000409810 STRIP1Q5VSL9 837 aa13.53□□□□□ -0.24
CHMP3-205ENST00000409810 RSBN1LQ6PCB5 846 aaPredicted RBP13.53□□□□□ -0.24
CHMP3-205ENST00000409810 TXNRD3Q86VQ6 643 aa13.53□□□□□ -0.24
CHMP3-205ENST00000409810 LDHDQ86WU2 507 aa13.53□□□□□ -0.24
CHMP3-205ENST00000409810 FBXW7Q969H0 707 aa13.53□□□□□ -0.24
CHMP3-205ENST00000409810 C1orf115Q9H7X2 142 aa13.53□□□□□ -0.24
CHMP3-205ENST00000409810 ADARB2Q9NS39 739 aaKnown RBP13.53□□□□□ -0.24
CHMP3-205ENST00000409810 PA2G4Q9UQ80 394 aaKnown RBP13.53□□□□□ -0.24
CHMP3-205ENST00000409810 IRS2Q9Y4H2 1338 aa13.53□□□□□ -0.24
CHMP3-205ENST00000409810 ARAP2Q8WZ64 1704 aa13.53□□□□□ -0.24
CHMP3-205ENST00000409810 PNMA6EA0A0J9YXQ4 647 aa13.52□□□□□ -0.25
CHMP3-205ENST00000409810 HIBADHP31937 336 aaKnown RBP13.52□□□□□ -0.25
CHMP3-205ENST00000409810 RRP1P56182 461 aaKnown RBP13.52□□□□□ -0.25
CHMP3-205ENST00000409810 G3BP1Q13283 466 aaKnown RBP eCLIP13.52□□□□□ -0.25
CHMP3-205ENST00000409810 USP50Q70EL3 339 aaPredicted RBP13.52□□□□□ -0.25
CHMP3-205ENST00000409810 ATG9AQ7Z3C6 839 aa13.52□□□□□ -0.25
CHMP3-205ENST00000409810 AGBL3Q8NEM8 1001 aa13.52□□□□□ -0.25
CHMP3-205ENST00000409810 LPIN2Q92539 896 aa13.52□□□□□ -0.25
CHMP3-205ENST00000409810 ADAMTSL1Q8N6G6 1762 aa13.52□□□□□ -0.25
CHMP3-205ENST00000409810 IL1R1P14778 569 aa13.51□□□□□ -0.25
CHMP3-205ENST00000409810 EPS15P42566 896 aa13.51□□□□□ -0.25
CHMP3-205ENST00000409810 POLA2Q14181 598 aa13.51□□□□□ -0.25
CHMP3-205ENST00000409810 TTLL5Q6EMB2 1281 aa13.51□□□□□ -0.25
CHMP3-205ENST00000409810 MICALL2Q8IY33 904 aa13.51□□□□□ -0.25
CHMP3-205ENST00000409810 SSH3Q8TE77 659 aa13.51□□□□□ -0.25
CHMP3-205ENST00000409810 KCNQ5Q9NR82 932 aa13.51□□□□□ -0.25
CHMP3-205ENST00000409810 CNOT7Q9UIV1 285 aaKnown RBP13.51□□□□□ -0.25
CHMP3-205ENST00000409810 CLEC11AQ9Y240 323 aa13.51□□□□□ -0.25
CHMP3-205ENST00000409810 AKAP2Q9Y2D5 859 aa13.51□□□□□ -0.25
CHMP3-205ENST00000409810 ZBTB12Q9Y330 459 aaPredicted RBP13.51□□□□□ -0.25
CHMP3-205ENST00000409810 HMMRO75330 724 aa13.5□□□□□ -0.25
CHMP3-205ENST00000409810 FGFR2P21802 821 aa13.5□□□□□ -0.25
CHMP3-205ENST00000409810 GYG1P46976 350 aa13.5□□□□□ -0.25
CHMP3-205ENST00000409810 MMP14P50281 582 aa13.5□□□□□ -0.25
CHMP3-205ENST00000409810 OS9Q13438 667 aaPredicted RBP13.5□□□□□ -0.25
CHMP3-205ENST00000409810 ATP2B3Q16720 1220 aa13.5□□□□□ -0.25
CHMP3-205ENST00000409810 C20orf194Q5TEA3 1177 aa13.5□□□□□ -0.25
CHMP3-205ENST00000409810 CHADLQ6NUI6 762 aa13.5□□□□□ -0.25
CHMP3-205ENST00000409810 CEP85Q6P2H3 762 aa13.5□□□□□ -0.25
CHMP3-205ENST00000409810 RPAP2Q8IXW5 612 aaPredicted RBP13.5□□□□□ -0.25
CHMP3-205ENST00000409810 ZBTB40Q9NUA8 1239 aa13.5□□□□□ -0.25
CHMP3-205ENST00000409810 FRAT2O75474 233 aaPredicted RBP13.49□□□□□ -0.25
CHMP3-205ENST00000409810 GTF2IP78347 998 aa13.49□□□□□ -0.25
CHMP3-205ENST00000409810 DACT2Q5SW24 774 aa13.49□□□□□ -0.25
CHMP3-205ENST00000409810 FAM84BQ96KN1 310 aaPredicted RBP13.49□□□□□ -0.25
CHMP3-205ENST00000409810 SURF6O75683 361 aaKnown RBP13.48□□□□□ -0.25
CHMP3-205ENST00000409810 SASH1O94885 1247 aa13.48□□□□□ -0.25
CHMP3-205ENST00000409810 USP17L8P0C7I0 530 aa13.48□□□□□ -0.25
CHMP3-205ENST00000409810 FKBP1AP62942 108 aaKnown RBP13.48□□□□□ -0.25
CHMP3-205ENST00000409810 FBXO33Q7Z6M2 555 aa13.48□□□□□ -0.25
CHMP3-205ENST00000409810 OGFOD1Q8N543 542 aa13.48□□□□□ -0.25
CHMP3-205ENST00000409810 TDRD7Q8NHU6 1098 aaKnown RBP13.48□□□□□ -0.25
CHMP3-205ENST00000409810 GNL3LQ9NVN8 582 aaKnown RBP13.48□□□□□ -0.25
CHMP3-205ENST00000409810 HDAC9Q9UKV0 1011 aa13.48□□□□□ -0.25
CHMP3-205ENST00000409810 POLR2AP24928 1970 aaKnown RBP13.48□□□□□ -0.25
CHMP3-205ENST00000409810 TFCP2Q12800 502 aa13.47□□□□□ -0.25
CHMP3-205ENST00000409810 KIF4BQ2VIQ3 1234 aa13.47□□□□□ -0.25
CHMP3-205ENST00000409810 HSP90AB4PQ58FF6 505 aa13.47□□□□□ -0.25
CHMP3-205ENST00000409810 ERC1Q8IUD2 1116 aa13.47□□□□□ -0.25
CHMP3-205ENST00000409810 ZC3H15Q8WU90 426 aaKnown RBP13.47□□□□□ -0.25
CHMP3-205ENST00000409810 NOP58Q9Y2X3 529 aaKnown RBP13.47□□□□□ -0.25
CHMP3-205ENST00000409810 TRPM7Q96QT4 1865 aa13.46□□□□□ -0.25
CHMP3-205ENST00000409810 ECM29Q5VYK3 1845 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms