RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 BRCA1P38398 1863 aaKnown RBP16.42■□□□□ 0.22
LIMS1-204ENST00000409441 ARHGAP27Q6ZUM4 889 aa16.41■□□□□ 0.22
LIMS1-204ENST00000409441 RTFDC1Q9BY42 306 aaPredicted RBP16.41■□□□□ 0.22
LIMS1-204ENST00000409441 GPR108Q9NPR9 543 aa16.41■□□□□ 0.22
LIMS1-204ENST00000409441 FGFR2P21802 821 aa16.41■□□□□ 0.22
LIMS1-204ENST00000409441 ATP2B3Q16720 1220 aa16.41■□□□□ 0.22
LIMS1-204ENST00000409441 TNNI3KQ59H18 835 aa16.41■□□□□ 0.22
LIMS1-204ENST00000409441 CLASRPQ8N2M8 674 aaKnown RBP16.41■□□□□ 0.22
LIMS1-204ENST00000409441 LPIN2Q92539 896 aa16.41■□□□□ 0.22
LIMS1-204ENST00000409441 EAF2Q96CJ1 260 aaPredicted RBP16.41■□□□□ 0.22
LIMS1-204ENST00000409441 TBC1D32Q96NH3 1257 aa16.41■□□□□ 0.22
LIMS1-204ENST00000409441 NEUROD6Q96NK8 337 aa16.41■□□□□ 0.22
LIMS1-204ENST00000409441 SPEF2Q9C093 1822 aa16.41■□□□□ 0.22
LIMS1-204ENST00000409441 LNPKQ9C0E8 428 aa16.41■□□□□ 0.22
LIMS1-204ENST00000409441 FPGT-TNNI3KV9GXZ4 949 aa16.41■□□□□ 0.22
LIMS1-204ENST00000409441 CACNA1SQ13698 1873 aa16.4■□□□□ 0.22
LIMS1-204ENST00000409441 A0A1B0GUL7 405 aa16.4■□□□□ 0.22
LIMS1-204ENST00000409441 FKBP4Q02790 459 aaKnown RBP eCLIP16.4■□□□□ 0.22
LIMS1-204ENST00000409441 SUPT20HQ8NEM7 779 aa16.4■□□□□ 0.22
LIMS1-204ENST00000409441 GPR101Q96P66 508 aaPredicted RBP16.4■□□□□ 0.22
LIMS1-204ENST00000409441 PSMD1Q99460 953 aa16.4■□□□□ 0.22
LIMS1-204ENST00000409441 SNED1Q8TER0 1413 aa16.39■□□□□ 0.21
LIMS1-204ENST00000409441 IFIT1P09914 478 aaKnown RBP16.39■□□□□ 0.21
LIMS1-204ENST00000409441 SLC5A1P13866 664 aa16.39■□□□□ 0.21
LIMS1-204ENST00000409441 WASHC4Q2M389 1173 aa16.39■□□□□ 0.21
LIMS1-204ENST00000409441 BMP2KLQ5H9B9 411 aa16.39■□□□□ 0.21
LIMS1-204ENST00000409441 AACSQ86V21 672 aa16.39■□□□□ 0.21
LIMS1-204ENST00000409441 ZC3H12CQ9C0D7 883 aaKnown RBP16.39■□□□□ 0.21
LIMS1-204ENST00000409441 TAOK3Q9H2K8 898 aa16.39■□□□□ 0.21
LIMS1-204ENST00000409441 NFKBIEO00221 500 aa16.38■□□□□ 0.21
LIMS1-204ENST00000409441 RIMBP2O15034 1052 aa16.38■□□□□ 0.21
LIMS1-204ENST00000409441 KLRK1P26718 216 aa16.38■□□□□ 0.21
LIMS1-204ENST00000409441 TXNRD3Q86VQ6 643 aa16.38■□□□□ 0.21
LIMS1-204ENST00000409441 EYA3Q99504 573 aa16.38■□□□□ 0.21
LIMS1-204ENST00000409441 CCDC8Q9H0W5 538 aaPredicted RBP16.38■□□□□ 0.21
LIMS1-204ENST00000409441 LRRC37AA6NMS7 1700 aa16.38■□□□□ 0.21
LIMS1-204ENST00000409441 GRIN3BO60391 1043 aa16.37■□□□□ 0.21
LIMS1-204ENST00000409441 IFIT2P09913 472 aaKnown RBP16.37■□□□□ 0.21
LIMS1-204ENST00000409441 BECN1Q14457 450 aa16.37■□□□□ 0.21
LIMS1-204ENST00000409441 POTEHQ6S545 545 aa16.37■□□□□ 0.21
LIMS1-204ENST00000409441 C16orf71Q8IYS4 520 aaPredicted RBP16.37■□□□□ 0.21
LIMS1-204ENST00000409441 XAGE2Q96GT9 111 aa16.37■□□□□ 0.21
LIMS1-204ENST00000409441 ZNF277Q9NRM2 450 aaPredicted RBP16.37■□□□□ 0.21
LIMS1-204ENST00000409441 ADORA1P30542 326 aa16.37■□□□□ 0.21
LIMS1-204ENST00000409441 C15orf52Q6ZUT6 534 aaKnown RBP16.37■□□□□ 0.21
LIMS1-204ENST00000409441 GYG1P46976 350 aa16.36■□□□□ 0.21
LIMS1-204ENST00000409441 CAVIN4Q5BKX8 364 aa16.36■□□□□ 0.21
LIMS1-204ENST00000409441 GORABQ5T7V8 394 aa16.36■□□□□ 0.21
LIMS1-204ENST00000409441 FAM84BQ96KN1 310 aaPredicted RBP16.36■□□□□ 0.21
LIMS1-204ENST00000409441 DBNDD2Q9BQY9 259 aa16.36■□□□□ 0.21
LIMS1-204ENST00000409441 VPS33BQ9H267 617 aa16.36■□□□□ 0.21
LIMS1-204ENST00000409441 GOLGB1Q14789 3259 aaKnown RBP16.35■□□□□ 0.21
LIMS1-204ENST00000409441 LTBP3Q9NS15 1303 aa16.35■□□□□ 0.21
LIMS1-204ENST00000409441 IRS2Q9Y4H2 1338 aa16.35■□□□□ 0.21
LIMS1-204ENST00000409441 PPIP5K2O43314 1243 aa16.35■□□□□ 0.21
LIMS1-204ENST00000409441 EIF5BO60841 1220 aaKnown RBP16.35■□□□□ 0.21
LIMS1-204ENST00000409441 BCAMP50895 628 aa16.35■□□□□ 0.21
LIMS1-204ENST00000409441 RASSF7Q02833 373 aa16.35■□□□□ 0.21
LIMS1-204ENST00000409441 KIAA2012Q0VF49 1180 aa16.35■□□□□ 0.21
LIMS1-204ENST00000409441 TLR7Q9NYK1 1049 aaKnown RBP16.35■□□□□ 0.21
LIMS1-204ENST00000409441 DBNLQ9UJU6 430 aaKnown RBP16.35■□□□□ 0.21
LIMS1-204ENST00000409441 HIBADHP31937 336 aaKnown RBP16.34■□□□□ 0.21
LIMS1-204ENST00000409441 IARSP41252 1262 aaKnown RBP16.34■□□□□ 0.21
LIMS1-204ENST00000409441 AOC3Q16853 763 aa16.34■□□□□ 0.21
LIMS1-204ENST00000409441 FBXO33Q7Z6M2 555 aa16.34■□□□□ 0.21
LIMS1-204ENST00000409441 VPS37DQ86XT2 251 aa16.34■□□□□ 0.21
LIMS1-204ENST00000409441 MED23Q9ULK4 1368 aa16.34■□□□□ 0.21
LIMS1-204ENST00000409441 ARFGEF1Q9Y6D6 1849 aa16.34■□□□□ 0.21
LIMS1-204ENST00000409441 DUOX1Q9NRD9 1551 aa16.34■□□□□ 0.21
LIMS1-204ENST00000409441 ZNF609O15014 1411 aa16.34■□□□□ 0.21
LIMS1-204ENST00000409441 G3V3G9 751 aa16.34■□□□□ 0.21
LIMS1-204ENST00000409441 PRELPP51888 382 aa16.34■□□□□ 0.21
LIMS1-204ENST00000409441 DOK7Q18PE1 504 aa16.34■□□□□ 0.21
LIMS1-204ENST00000409441 DCAF8Q5TAQ9 597 aa16.34■□□□□ 0.21
LIMS1-204ENST00000409441 LARGE2Q8N3Y3 721 aa16.34■□□□□ 0.21
LIMS1-204ENST00000409441 OTUD7AQ8TE49 926 aaPredicted RBP16.34■□□□□ 0.21
LIMS1-204ENST00000409441 LTBP1Q14766 1721 aa16.33■□□□□ 0.2
LIMS1-204ENST00000409441 CCDC158Q5M9N0 1113 aa16.33■□□□□ 0.2
LIMS1-204ENST00000409441 CCDC102BQ68D86 513 aa16.33■□□□□ 0.2
LIMS1-204ENST00000409441 ZNF804AQ7Z570 1209 aa16.33■□□□□ 0.2
LIMS1-204ENST00000409441 LMNB1P20700 586 aa16.32■□□□□ 0.2
LIMS1-204ENST00000409441 PHKA1P46020 1223 aa16.32■□□□□ 0.2
LIMS1-204ENST00000409441 NBR1Q14596 966 aa16.32■□□□□ 0.2
LIMS1-204ENST00000409441 C22orf23Q9BZE7 217 aa16.32■□□□□ 0.2
LIMS1-204ENST00000409441 COA1Q9GZY4 146 aa16.32■□□□□ 0.2
LIMS1-204ENST00000409441 CD209Q9NNX6 404 aa16.32■□□□□ 0.2
LIMS1-204ENST00000409441 DBNDD1Q9H9R9 158 aa16.31■□□□□ 0.2
LIMS1-204ENST00000409441 GNL3LQ9NVN8 582 aaKnown RBP16.31■□□□□ 0.2
LIMS1-204ENST00000409441 FER1L6Q2WGJ9 1857 aa16.31■□□□□ 0.2
LIMS1-204ENST00000409441 A0A1B0GUL6 1792 aa16.3■□□□□ 0.2
LIMS1-204ENST00000409441 TTC39AQ5SRH9 613 aa16.3■□□□□ 0.2
LIMS1-204ENST00000409441 PODNQ7Z5L7 613 aa16.3■□□□□ 0.2
LIMS1-204ENST00000409441 JDP2Q8WYK2 163 aa16.3■□□□□ 0.2
LIMS1-204ENST00000409441 ECHDC1Q9NTX5 307 aa16.3■□□□□ 0.2
LIMS1-204ENST00000409441 IQSEC3Q9UPP2 1182 aaPredicted RBP16.3■□□□□ 0.2
LIMS1-204ENST00000409441 FRAT2O75474 233 aaPredicted RBP16.3■□□□□ 0.2
LIMS1-204ENST00000409441 IL1R1P14778 569 aa16.3■□□□□ 0.2
LIMS1-204ENST00000409441 MX1P20591 662 aa16.3■□□□□ 0.2
LIMS1-204ENST00000409441 SLC4A3P48751 1232 aa16.3■□□□□ 0.2
LIMS1-204ENST00000409441 MFAP1P55081 439 aaKnown RBP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms