RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 ZMYM6O95789 1325 aa10.36□□□□□ -0.75
SNRNP40-202ENST00000373720 DHX16O60231 1041 aaKnown RBP10.36□□□□□ -0.75
SNRNP40-202ENST00000373720 ZSCAN22P10073 491 aaPredicted RBP10.36□□□□□ -0.75
SNRNP40-202ENST00000373720 HMGN5P82970 282 aaKnown RBP10.36□□□□□ -0.75
SNRNP40-202ENST00000373720 CCDC152Q4G0S7 254 aa10.36□□□□□ -0.75
SNRNP40-202ENST00000373720 TTC39AQ5SRH9 613 aa10.36□□□□□ -0.75
SNRNP40-202ENST00000373720 LDHAL6AQ6ZMR3 332 aa10.36□□□□□ -0.75
SNRNP40-202ENST00000373720 FAM184AQ8NB25 1140 aa10.36□□□□□ -0.75
SNRNP40-202ENST00000373720 TTLL11Q8NHH1 800 aa10.36□□□□□ -0.75
SNRNP40-202ENST00000373720 LPIN2Q92539 896 aa10.36□□□□□ -0.75
SNRNP40-202ENST00000373720 NEUROD6Q96NK8 337 aa10.36□□□□□ -0.75
SNRNP40-202ENST00000373720 DBNDD2Q9BQY9 259 aa10.36□□□□□ -0.75
SNRNP40-202ENST00000373720 OCEL1Q9H607 264 aa10.36□□□□□ -0.75
SNRNP40-202ENST00000373720 LMBRD1Q9NUN5 540 aa10.36□□□□□ -0.75
SNRNP40-202ENST00000373720 TRMT112Q9UI30 125 aaKnown RBP10.36□□□□□ -0.75
SNRNP40-202ENST00000373720 RIPOR2Q9Y4F9 1068 aa10.36□□□□□ -0.75
SNRNP40-202ENST00000373720 IRS4O14654 1257 aaPredicted RBP10.35□□□□□ -0.75
SNRNP40-202ENST00000373720 STX6O43752 255 aa10.35□□□□□ -0.75
SNRNP40-202ENST00000373720 PDE8BO95263 885 aa10.35□□□□□ -0.75
SNRNP40-202ENST00000373720 PRIM1P49642 420 aaKnown RBP10.35□□□□□ -0.75
SNRNP40-202ENST00000373720 IRX5P78411 483 aaPredicted RBP10.35□□□□□ -0.75
SNRNP40-202ENST00000373720 UBE3CQ15386 1083 aa10.35□□□□□ -0.75
SNRNP40-202ENST00000373720 PUM3Q15397 648 aaKnown RBP10.35□□□□□ -0.75
SNRNP40-202ENST00000373720 DHX32Q7L7V1 743 aaKnown RBP10.35□□□□□ -0.75
SNRNP40-202ENST00000373720 FNBP4Q8N3X1 1017 aaPredicted RBP10.35□□□□□ -0.75
SNRNP40-202ENST00000373720 UTP14AQ9BVJ6 771 aaKnown RBP10.35□□□□□ -0.75
SNRNP40-202ENST00000373720 AGXT2Q9BYV1 514 aa10.35□□□□□ -0.75
SNRNP40-202ENST00000373720 UPF3BQ9BZI7 483 aaKnown RBP10.35□□□□□ -0.75
SNRNP40-202ENST00000373720 ZSCAN16Q9H4T2 348 aaPredicted RBP10.35□□□□□ -0.75
SNRNP40-202ENST00000373720 LOC102724428A0A0B4J2F2 783 aa10.34□□□□□ -0.75
SNRNP40-202ENST00000373720 A0A0D9SFI3 127 aa10.34□□□□□ -0.75
SNRNP40-202ENST00000373720 MAP4K4O95819 1239 aaPredicted RBP10.34□□□□□ -0.75
SNRNP40-202ENST00000373720 PYGBP11216 843 aa10.34□□□□□ -0.75
SNRNP40-202ENST00000373720 GNAT2P19087 354 aa10.34□□□□□ -0.75
SNRNP40-202ENST00000373720 ITGA6P23229 1130 aa10.34□□□□□ -0.75
SNRNP40-202ENST00000373720 SIK1P57059 783 aa10.34□□□□□ -0.75
SNRNP40-202ENST00000373720 EVCP57679 992 aa10.34□□□□□ -0.75
SNRNP40-202ENST00000373720 PTH1RQ03431 593 aa10.34□□□□□ -0.75
SNRNP40-202ENST00000373720 ATP2B3Q16720 1220 aa10.34□□□□□ -0.75
SNRNP40-202ENST00000373720 HS1BP3Q53T59 392 aa10.34□□□□□ -0.75
SNRNP40-202ENST00000373720 MCTP1Q6DN14 999 aa10.34□□□□□ -0.75
SNRNP40-202ENST00000373720 APPBP2Q92624 585 aa10.34□□□□□ -0.75
SNRNP40-202ENST00000373720 ZNF274Q96GC6 653 aaPredicted RBP10.34□□□□□ -0.75
SNRNP40-202ENST00000373720 FAM227BQ96M60 508 aa10.34□□□□□ -0.75
SNRNP40-202ENST00000373720 NYXQ9GZU5 481 aa10.34□□□□□ -0.75
SNRNP40-202ENST00000373720 SCAND2PQ9GZW5 306 aaPredicted RBP10.34□□□□□ -0.75
SNRNP40-202ENST00000373720 TLR7Q9NYK1 1049 aaKnown RBP10.34□□□□□ -0.75
SNRNP40-202ENST00000373720 TBC1D2BQ9UPU7 963 aa10.34□□□□□ -0.75
SNRNP40-202ENST00000373720 ELP1O95163 1332 aa10.33□□□□□ -0.76
SNRNP40-202ENST00000373720 CNTNAP4Q9C0A0 1308 aa10.33□□□□□ -0.76
SNRNP40-202ENST00000373720 ATRNO75882 1429 aa10.33□□□□□ -0.76
SNRNP40-202ENST00000373720 SLC5A1P13866 664 aa10.33□□□□□ -0.76
SNRNP40-202ENST00000373720 ARID4AP29374 1257 aaPredicted RBP10.33□□□□□ -0.76
SNRNP40-202ENST00000373720 ATP6V1AP38606 617 aa10.33□□□□□ -0.76
SNRNP40-202ENST00000373720 UBE2HP62256 183 aa10.33□□□□□ -0.76
SNRNP40-202ENST00000373720 IMMTQ16891 758 aaKnown RBP10.33□□□□□ -0.76
SNRNP40-202ENST00000373720 METTL24Q5JXM2 366 aa10.33□□□□□ -0.76
SNRNP40-202ENST00000373720 ZGPATQ8N5A5 531 aaKnown RBP10.33□□□□□ -0.76
SNRNP40-202ENST00000373720 KLHDC4Q8TBB5 520 aa10.33□□□□□ -0.76
SNRNP40-202ENST00000373720 XAGE2Q96GT9 111 aa10.33□□□□□ -0.76
SNRNP40-202ENST00000373720 GRPEL1Q9HAV7 217 aa10.33□□□□□ -0.76
SNRNP40-202ENST00000373720 CNNM1Q9NRU3 951 aa10.33□□□□□ -0.76
SNRNP40-202ENST00000373720 ZDHHC9Q9Y397 364 aa10.33□□□□□ -0.76
SNRNP40-202ENST00000373720 GOLIM4O00461 696 aa10.32□□□□□ -0.76
SNRNP40-202ENST00000373720 SEMA3EO15041 775 aa10.32□□□□□ -0.76
SNRNP40-202ENST00000373720 CAVIN2O95810 425 aa10.32□□□□□ -0.76
SNRNP40-202ENST00000373720 SYT1P21579 422 aa10.32□□□□□ -0.76
SNRNP40-202ENST00000373720 IGHMBP2P38935 993 aaKnown RBP10.32□□□□□ -0.76
SNRNP40-202ENST00000373720 ALX1Q15699 326 aa10.32□□□□□ -0.76
SNRNP40-202ENST00000373720 SLC10A5Q5PT55 438 aa10.32□□□□□ -0.76
SNRNP40-202ENST00000373720 INTS5Q6P9B9 1019 aaKnown RBP10.32□□□□□ -0.76
SNRNP40-202ENST00000373720 FAM89AQ96GI7 184 aa10.32□□□□□ -0.76
SNRNP40-202ENST00000373720 DNAJC2Q99543 621 aaKnown RBP10.32□□□□□ -0.76
SNRNP40-202ENST00000373720 MPHOSPH8Q99549 860 aa10.32□□□□□ -0.76
SNRNP40-202ENST00000373720 IL25Q9H293 177 aa10.32□□□□□ -0.76
SNRNP40-202ENST00000373720 CFAP45Q9UL16 551 aa10.32□□□□□ -0.76
SNRNP40-202ENST00000373720 ZBTB1Q9Y2K1 713 aa10.32□□□□□ -0.76
SNRNP40-202ENST00000373720 PDS5AQ29RF7 1337 aaKnown RBP10.32□□□□□ -0.76
SNRNP40-202ENST00000373720 MYH3P11055 1940 aa10.31□□□□□ -0.76
SNRNP40-202ENST00000373720 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.31□□□□□ -0.76
SNRNP40-202ENST00000373720 SNPHO15079 494 aa10.31□□□□□ -0.76
SNRNP40-202ENST00000373720 F13A1P00488 732 aa10.31□□□□□ -0.76
SNRNP40-202ENST00000373720 HSPD1P10809 573 aaKnown RBP10.31□□□□□ -0.76
SNRNP40-202ENST00000373720 PCP11498 1178 aaKnown RBP10.31□□□□□ -0.76
SNRNP40-202ENST00000373720 CRKLP46109 303 aaKnown RBP10.31□□□□□ -0.76
SNRNP40-202ENST00000373720 TIMM10P62072 90 aa10.31□□□□□ -0.76
SNRNP40-202ENST00000373720 SF3B3Q15393 1217 aaKnown RBP10.31□□□□□ -0.76
SNRNP40-202ENST00000373720 LRRC24Q50LG9 513 aa10.31□□□□□ -0.76
SNRNP40-202ENST00000373720 ILDR1Q86SU0 546 aaPredicted RBP10.31□□□□□ -0.76
SNRNP40-202ENST00000373720 VGLL2Q8N8G2 317 aa10.31□□□□□ -0.76
SNRNP40-202ENST00000373720 SYTL4Q96C24 671 aaPredicted RBP10.31□□□□□ -0.76
SNRNP40-202ENST00000373720 GNL3LQ9NVN8 582 aaKnown RBP10.31□□□□□ -0.76
SNRNP40-202ENST00000373720 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.31□□□□□ -0.76
SNRNP40-202ENST00000373720 LRP5O75197 1615 aa10.31□□□□□ -0.76
SNRNP40-202ENST00000373720 PFKFB2O60825 505 aa10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 PRPF40AO75400 957 aaKnown RBP10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 CAMTA2O94983 1202 aa10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 FGFR2P21802 821 aa10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 GJB2P29033 226 aa10.3□□□□□ -0.76
SNRNP40-202ENST00000373720 MCM5P33992 734 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms