RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 PPIP5K2O43314 1243 aa13.34□□□□□ -0.27
SYNE1-204ENST00000367248 RBM25P49756 843 aaKnown RBP13.34□□□□□ -0.27
SYNE1-204ENST00000367248 GDPD2Q9HCC8 539 aa13.34□□□□□ -0.27
SYNE1-204ENST00000367248 KLHDC4Q8TBB5 520 aa13.34□□□□□ -0.27
SYNE1-204ENST00000367248 MYCP01106 439 aaPredicted RBP13.34□□□□□ -0.27
SYNE1-204ENST00000367248 GGA1Q9UJY5 639 aa13.34□□□□□ -0.27
SYNE1-204ENST00000367248 USP8P40818 1118 aa13.33□□□□□ -0.28
SYNE1-204ENST00000367248 ARHGEF25Q86VW2 580 aa13.33□□□□□ -0.28
SYNE1-204ENST00000367248 NIM1KQ8IY84 436 aa13.33□□□□□ -0.28
SYNE1-204ENST00000367248 TSG101Q99816 390 aa13.33□□□□□ -0.28
SYNE1-204ENST00000367248 ROBO2Q9HCK4 1378 aa13.33□□□□□ -0.28
SYNE1-204ENST00000367248 NEFHP12036 1026 aa13.33□□□□□ -0.28
SYNE1-204ENST00000367248 DESP17661 470 aa13.33□□□□□ -0.28
SYNE1-204ENST00000367248 TNNI3KQ59H18 835 aa13.33□□□□□ -0.28
SYNE1-204ENST00000367248 ZNF772Q68DY9 489 aaPredicted RBP13.33□□□□□ -0.28
SYNE1-204ENST00000367248 FNBP4Q8N3X1 1017 aaPredicted RBP13.33□□□□□ -0.28
SYNE1-204ENST00000367248 CALML4Q96GE6 196 aa13.33□□□□□ -0.28
SYNE1-204ENST00000367248 PUF60Q9UHX1 559 aaKnown RBP13.33□□□□□ -0.28
SYNE1-204ENST00000367248 FPGT-TNNI3KV9GXZ4 949 aa13.33□□□□□ -0.28
SYNE1-204ENST00000367248 CHMLP26374 656 aa13.33□□□□□ -0.28
SYNE1-204ENST00000367248 SYCP3Q8IZU3 236 aa13.33□□□□□ -0.28
SYNE1-204ENST00000367248 ZSCAN16Q9H4T2 348 aaPredicted RBP13.33□□□□□ -0.28
SYNE1-204ENST00000367248 HIBADHP31937 336 aaKnown RBP13.33□□□□□ -0.28
SYNE1-204ENST00000367248 SMARCC2Q8TAQ2 1214 aa13.33□□□□□ -0.28
SYNE1-204ENST00000367248 ALG1Q9BT22 464 aa13.33□□□□□ -0.28
SYNE1-204ENST00000367248 TCERG1LQ5VWI1 586 aa13.33□□□□□ -0.28
SYNE1-204ENST00000367248 TTC6Q86TZ1 520 aa13.33□□□□□ -0.28
SYNE1-204ENST00000367248 SUCLG2Q96I99 432 aa13.33□□□□□ -0.28
SYNE1-204ENST00000367248 ZNF594Q96JF6 807 aaPredicted RBP13.33□□□□□ -0.28
SYNE1-204ENST00000367248 TSPOAP1O95153 1857 aa13.32□□□□□ -0.28
SYNE1-204ENST00000367248 GIGYF1O75420 1035 aaPredicted RBP13.32□□□□□ -0.28
SYNE1-204ENST00000367248 CALM1P0DP23 149 aa13.32□□□□□ -0.28
SYNE1-204ENST00000367248 CALM2P0DP24 149 aa13.32□□□□□ -0.28
SYNE1-204ENST00000367248 CALM3P0DP25 149 aa13.32□□□□□ -0.28
SYNE1-204ENST00000367248 HSP90AA2PQ14568 343 aaPredicted RBP13.32□□□□□ -0.28
SYNE1-204ENST00000367248 PUM3Q15397 648 aaKnown RBP13.32□□□□□ -0.28
SYNE1-204ENST00000367248 Q6ZUG5 572 aa13.32□□□□□ -0.28
SYNE1-204ENST00000367248 RBM27Q9P2N5 1060 aaKnown RBP13.32□□□□□ -0.28
SYNE1-204ENST00000367248 CHST3Q7LGC8 479 aa13.32□□□□□ -0.28
SYNE1-204ENST00000367248 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.32□□□□□ -0.28
SYNE1-204ENST00000367248 CCDC171Q6TFL3 1326 aa13.32□□□□□ -0.28
SYNE1-204ENST00000367248 DPY19L2Q6NUT2 758 aa13.32□□□□□ -0.28
SYNE1-204ENST00000367248 ANKRD62A6NC57 917 aa13.32□□□□□ -0.28
SYNE1-204ENST00000367248 BMP15O95972 392 aa13.32□□□□□ -0.28
SYNE1-204ENST00000367248 MYO6Q9UM54 1294 aa13.32□□□□□ -0.28
SYNE1-204ENST00000367248 NOD1Q9Y239 953 aa13.32□□□□□ -0.28
SYNE1-204ENST00000367248 MBD4O95243 580 aa13.32□□□□□ -0.28
SYNE1-204ENST00000367248 NLRP1Q9C000 1473 aa13.32□□□□□ -0.28
SYNE1-204ENST00000367248 TNNT1P13805 278 aa13.32□□□□□ -0.28
SYNE1-204ENST00000367248 AATKQ6ZMQ8 1374 aa13.31□□□□□ -0.28
SYNE1-204ENST00000367248 PYM1Q9BRP8 204 aaKnown RBP13.31□□□□□ -0.28
SYNE1-204ENST00000367248 TCIRG1Q13488 830 aa13.31□□□□□ -0.28
SYNE1-204ENST00000367248 FKBP15Q5T1M5 1219 aa13.31□□□□□ -0.28
SYNE1-204ENST00000367248 AMPD3Q01432 767 aa13.31□□□□□ -0.28
SYNE1-204ENST00000367248 ERCC4Q92889 916 aaPredicted RBP13.31□□□□□ -0.28
SYNE1-204ENST00000367248 GINS2Q9Y248 185 aa13.31□□□□□ -0.28
SYNE1-204ENST00000367248 KCNQ3O43525 872 aa13.31□□□□□ -0.28
SYNE1-204ENST00000367248 EP400NLQ6ZTU2 488 aa13.31□□□□□ -0.28
SYNE1-204ENST00000367248 SAMD9LQ8IVG5 1584 aa13.31□□□□□ -0.28
SYNE1-204ENST00000367248 ZSCAN22P10073 491 aaPredicted RBP13.31□□□□□ -0.28
SYNE1-204ENST00000367248 CCDC102BQ68D86 513 aa13.31□□□□□ -0.28
SYNE1-204ENST00000367248 FAM212AQ96EL1 285 aa13.31□□□□□ -0.28
SYNE1-204ENST00000367248 PSMD1Q99460 953 aa13.31□□□□□ -0.28
SYNE1-204ENST00000367248 ERBB4Q15303 1308 aa13.31□□□□□ -0.28
SYNE1-204ENST00000367248 TEX11Q8IYF3 940 aa13.3□□□□□ -0.28
SYNE1-204ENST00000367248 KDM5DQ9BY66 1539 aa13.3□□□□□ -0.28
SYNE1-204ENST00000367248 EPB41L2O43491 1005 aaKnown RBP13.3□□□□□ -0.28
SYNE1-204ENST00000367248 SFPQP23246 707 aaKnown RBP eCLIP13.3□□□□□ -0.28
SYNE1-204ENST00000367248 CREB3L3Q68CJ9 461 aa13.3□□□□□ -0.28
SYNE1-204ENST00000367248 XAGE2Q96GT9 111 aa13.3□□□□□ -0.28
SYNE1-204ENST00000367248 PRR36Q9H6K5 1346 aa13.3□□□□□ -0.28
SYNE1-204ENST00000367248 DNA2P51530 1060 aa13.3□□□□□ -0.28
SYNE1-204ENST00000367248 AKNAD1Q5T1N1 836 aa13.3□□□□□ -0.28
SYNE1-204ENST00000367248 ZKSCAN3Q9BRR0 538 aa13.3□□□□□ -0.28
SYNE1-204ENST00000367248 BRPF3Q9ULD4 1205 aa13.3□□□□□ -0.28
SYNE1-204ENST00000367248 MACROD2A1Z1Q3 448 aa13.3□□□□□ -0.28
SYNE1-204ENST00000367248 DHX32Q7L7V1 743 aaKnown RBP13.3□□□□□ -0.28
SYNE1-204ENST00000367248 HELLSQ9NRZ9 838 aa13.3□□□□□ -0.28
SYNE1-204ENST00000367248 C2CD5Q86YS7 1000 aa13.3□□□□□ -0.28
SYNE1-204ENST00000367248 TCHPQ9BT92 498 aa13.3□□□□□ -0.28
SYNE1-204ENST00000367248 ISM2Q6H9L7 571 aa13.29□□□□□ -0.28
SYNE1-204ENST00000367248 KRT27Q7Z3Y8 459 aa13.29□□□□□ -0.28
SYNE1-204ENST00000367248 CCDC150Q8NCX0 1101 aa13.29□□□□□ -0.28
SYNE1-204ENST00000367248 TMOD4Q9NZQ9 345 aa13.29□□□□□ -0.28
SYNE1-204ENST00000367248 ERVK-7P63135 1459 aa13.29□□□□□ -0.28
SYNE1-204ENST00000367248 ARHGAP29Q52LW3 1261 aa13.29□□□□□ -0.28
SYNE1-204ENST00000367248 OTUD7AQ8TE49 926 aaPredicted RBP13.29□□□□□ -0.28
SYNE1-204ENST00000367248 UGGT1Q9NYU2 1555 aa13.29□□□□□ -0.28
SYNE1-204ENST00000367248 FGFR1OPO95684 399 aaKnown RBP13.29□□□□□ -0.28
SYNE1-204ENST00000367248 DOK7Q18PE1 504 aa13.29□□□□□ -0.28
SYNE1-204ENST00000367248 H7C1D1 291 aa13.29□□□□□ -0.28
SYNE1-204ENST00000367248 DPH6Q7L8W6 267 aa13.29□□□□□ -0.28
SYNE1-204ENST00000367248 POTEJP0CG39 1038 aa13.29□□□□□ -0.28
SYNE1-204ENST00000367248 C8orf34Q49A92 452 aa13.29□□□□□ -0.28
SYNE1-204ENST00000367248 LPIN2Q92539 896 aa13.29□□□□□ -0.28
SYNE1-204ENST00000367248 RTL9Q8NET4 1388 aa13.29□□□□□ -0.28
SYNE1-204ENST00000367248 FAM135BQ49AJ0 1406 aa13.29□□□□□ -0.28
SYNE1-204ENST00000367248 NAPAP54920 295 aa13.28□□□□□ -0.28
SYNE1-204ENST00000367248 TEX35Q5T0J7 233 aa13.28□□□□□ -0.28
SYNE1-204ENST00000367248 ERMNQ8TAM6 284 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms