RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 C6orf229H3BNL8 230 aa4.98□□□□□ -1.61
LIG4-201ENST00000356922 UFL1O94874 794 aa4.98□□□□□ -1.61
LIG4-201ENST00000356922 OS9Q13438 667 aaPredicted RBP4.98□□□□□ -1.61
LIG4-201ENST00000356922 DPP8Q6V1X1 898 aaPredicted RBP4.98□□□□□ -1.61
LIG4-201ENST00000356922 ERICH6Q7L0X2 663 aa4.98□□□□□ -1.61
LIG4-201ENST00000356922 LRRCC1Q9C099 1032 aa4.98□□□□□ -1.61
LIG4-201ENST00000356922 DBNDD1Q9H9R9 158 aa4.98□□□□□ -1.61
LIG4-201ENST00000356922 CEP126Q9P2H0 1117 aa4.98□□□□□ -1.61
LIG4-201ENST00000356922 LRRC37AA6NMS7 1700 aa4.98□□□□□ -1.61
LIG4-201ENST00000356922 HMMRO75330 724 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 HSP90B1P14625 803 aaKnown RBP4.97□□□□□ -1.61
LIG4-201ENST00000356922 ARHGAP27Q6ZUM4 889 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 AACSQ86V21 672 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 CHD1LQ86WJ1 897 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 ANTXR1Q9H6X2 564 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 SNRKQ9NRH2 765 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 MROH5Q6ZUA9 1318 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 MAP4K4O95819 1239 aaPredicted RBP4.97□□□□□ -1.61
LIG4-201ENST00000356922 ATP2B3Q16720 1220 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 TBC1D9Q6ZT07 1266 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 PLEKHM2Q8IWE5 1019 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 KIF1BPQ96EK5 621 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 RTFDC1Q9BY42 306 aaPredicted RBP4.97□□□□□ -1.61
LIG4-201ENST00000356922 CHMP4BQ9H444 224 aaKnown RBP4.97□□□□□ -1.61
LIG4-201ENST00000356922 COL1A1P02452 1464 aaPredicted RBP4.97□□□□□ -1.61
LIG4-201ENST00000356922 SCN9AQ15858 1988 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 XDHP47989 1333 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 AAMPQ13685 434 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 CCDC102BQ68D86 513 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 HDAC5Q9UQL6 1122 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 BRCA2P51587 3418 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 FER1L6Q2WGJ9 1857 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 SHTN1A0MZ66 631 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 MCAMP43121 646 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 GPR162Q16538 588 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 WASHC4Q2M389 1173 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 FBXO33Q7Z6M2 555 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 PI4K2BQ8TCG2 481 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 ZNF384Q8TF68 577 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 LPIN2Q92539 896 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 GCC1Q96CN9 775 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 GGA1Q9UJY5 639 aa4.97□□□□□ -1.61
LIG4-201ENST00000356922 ZNF609O15014 1411 aa4.96□□□□□ -1.61
LIG4-201ENST00000356922 RGS3P49796 1198 aa4.96□□□□□ -1.62
LIG4-201ENST00000356922 PUM3Q15397 648 aaKnown RBP4.96□□□□□ -1.62
LIG4-201ENST00000356922 PCDHAC2Q9Y5I4 1007 aa4.96□□□□□ -1.62
LIG4-201ENST00000356922 RAB11FIP3O75154 756 aa4.96□□□□□ -1.62
LIG4-201ENST00000356922 GSPT1P15170 499 aaKnown RBP4.96□□□□□ -1.62
LIG4-201ENST00000356922 RASGRF1Q13972 1273 aa4.96□□□□□ -1.62
LIG4-201ENST00000356922 UBE4AQ14139 1066 aa4.96□□□□□ -1.62
LIG4-201ENST00000356922 CCDC93Q567U6 631 aa4.96□□□□□ -1.62
LIG4-201ENST00000356922 ERICH6BQ5W0A0 696 aa4.96□□□□□ -1.62
LIG4-201ENST00000356922 CENPQQ7L2Z9 268 aaPredicted RBP4.96□□□□□ -1.62
LIG4-201ENST00000356922 CERS5Q8N5B7 392 aa4.96□□□□□ -1.62
LIG4-201ENST00000356922 BOLA2Q9H3K6 86 aa4.96□□□□□ -1.62
LIG4-201ENST00000356922 CD209Q9NNX6 404 aa4.96□□□□□ -1.62
LIG4-201ENST00000356922 FBXO3Q9UK99 471 aa4.96□□□□□ -1.62
LIG4-201ENST00000356922 CCDC88AQ3V6T2 1871 aa4.96□□□□□ -1.62
LIG4-201ENST00000356922 PDE1AP54750 535 aa4.96□□□□□ -1.62
LIG4-201ENST00000356922 FKBP4Q02790 459 aaKnown RBP eCLIP4.96□□□□□ -1.62
LIG4-201ENST00000356922 KIAA2012Q0VF49 1180 aa4.96□□□□□ -1.62
LIG4-201ENST00000356922 CLASRPQ8N2M8 674 aaKnown RBP4.96□□□□□ -1.62
LIG4-201ENST00000356922 PSMD1Q99460 953 aa4.96□□□□□ -1.62
LIG4-201ENST00000356922 HMG20BQ9P0W2 317 aa4.96□□□□□ -1.62
LIG4-201ENST00000356922 ZBTB12Q9Y330 459 aaPredicted RBP4.96□□□□□ -1.62
LIG4-201ENST00000356922 AOX1Q06278 1338 aa4.96□□□□□ -1.62
LIG4-201ENST00000356922 RAD17O75943 681 aa4.95□□□□□ -1.62
LIG4-201ENST00000356922 EGFRP00533 1210 aa4.95□□□□□ -1.62
LIG4-201ENST00000356922 CYP2E1P05181 493 aaPredicted RBP4.95□□□□□ -1.62
LIG4-201ENST00000356922 ZAP70P43403 619 aa4.95□□□□□ -1.62
LIG4-201ENST00000356922 ANKRD2Q9GZV1 360 aa4.95□□□□□ -1.62
LIG4-201ENST00000356922 LEMD3Q9Y2U8 911 aa4.95□□□□□ -1.62
LIG4-201ENST00000356922 SBF1O95248 1867 aa4.95□□□□□ -1.62
LIG4-201ENST00000356922 MYO5AQ9Y4I1 1855 aaKnown RBP4.95□□□□□ -1.62
LIG4-201ENST00000356922 AKAP11Q9UKA4 1901 aa4.95□□□□□ -1.62
LIG4-201ENST00000356922 PPIP5K2O43314 1243 aa4.95□□□□□ -1.62
LIG4-201ENST00000356922 ATP2B4P23634 1241 aa4.95□□□□□ -1.62
LIG4-201ENST00000356922 HIBADHP31937 336 aaKnown RBP4.95□□□□□ -1.62
LIG4-201ENST00000356922 RTKN2Q8IZC4 609 aa4.95□□□□□ -1.62
LIG4-201ENST00000356922 TDRD7Q8NHU6 1098 aaKnown RBP4.95□□□□□ -1.62
LIG4-201ENST00000356922 ZC3H12CQ9C0D7 883 aaKnown RBP4.95□□□□□ -1.62
LIG4-201ENST00000356922 IL25Q9H293 177 aa4.95□□□□□ -1.62
LIG4-201ENST00000356922 TAOK3Q9H2K8 898 aa4.95□□□□□ -1.62
LIG4-201ENST00000356922 GPR108Q9NPR9 543 aa4.95□□□□□ -1.62
LIG4-201ENST00000356922 ARFGEF1Q9Y6D6 1849 aa4.95□□□□□ -1.62
LIG4-201ENST00000356922 KCNJ4P48050 445 aa4.95□□□□□ -1.62
LIG4-201ENST00000356922 CXCL9Q07325 125 aa4.95□□□□□ -1.62
LIG4-201ENST00000356922 MAPK8IP2Q13387 824 aaPredicted RBP4.95□□□□□ -1.62
LIG4-201ENST00000356922 ZBTB47Q9UFB7 747 aaPredicted RBP4.95□□□□□ -1.62
LIG4-201ENST00000356922 ZNF541Q9H0D2 1346 aa4.94□□□□□ -1.62
LIG4-201ENST00000356922 ECE2O60344 883 aa4.94□□□□□ -1.62
LIG4-201ENST00000356922 IFIT2P09913 472 aaKnown RBP4.94□□□□□ -1.62
LIG4-201ENST00000356922 IL1R1P14778 569 aa4.94□□□□□ -1.62
LIG4-201ENST00000356922 MX1P20591 662 aa4.94□□□□□ -1.62
LIG4-201ENST00000356922 IARSP41252 1262 aaKnown RBP4.94□□□□□ -1.62
LIG4-201ENST00000356922 GTF2IP78347 998 aa4.94□□□□□ -1.62
LIG4-201ENST00000356922 C9orf131Q5VYM1 1079 aa4.94□□□□□ -1.62
LIG4-201ENST00000356922 PIH1D3Q9NQM4 214 aaKnown RBP4.94□□□□□ -1.62
LIG4-201ENST00000356922 PRDX5P30044 214 aa4.94□□□□□ -1.62
LIG4-201ENST00000356922 HSP90AB4PQ58FF6 505 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms