RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 CHMLP26374 656 aa11.25□□□□□ -0.61
ATG4A-202ENST00000345734 TCIRG1Q13488 830 aa11.25□□□□□ -0.61
ATG4A-202ENST00000345734 LMBR1LQ6UX01 489 aa11.25□□□□□ -0.61
ATG4A-202ENST00000345734 TATDN2Q93075 761 aa11.25□□□□□ -0.61
ATG4A-202ENST00000345734 EAF2Q96CJ1 260 aaPredicted RBP11.25□□□□□ -0.61
ATG4A-202ENST00000345734 COPRSQ9NQ92 184 aa11.25□□□□□ -0.61
ATG4A-202ENST00000345734 MOXD2PA6NHM9 499 aa11.24□□□□□ -0.61
ATG4A-202ENST00000345734 HLFQ16534 295 aa11.24□□□□□ -0.61
ATG4A-202ENST00000345734 QPCTQ16769 361 aa11.24□□□□□ -0.61
ATG4A-202ENST00000345734 ESYT1Q9BSJ8 1104 aa11.24□□□□□ -0.61
ATG4A-202ENST00000345734 CCDC8Q9H0W5 538 aaPredicted RBP11.24□□□□□ -0.61
ATG4A-202ENST00000345734 SLKQ9H2G2 1235 aaPredicted RBP11.24□□□□□ -0.61
ATG4A-202ENST00000345734 CHMP3Q9Y3E7 222 aa11.24□□□□□ -0.61
ATG4A-202ENST00000345734 TTC41PQ6P2S7 1318 aa11.24□□□□□ -0.61
ATG4A-202ENST00000345734 MAP3K15Q6ZN16 1313 aa11.24□□□□□ -0.61
ATG4A-202ENST00000345734 NUP98P52948 1817 aa11.24□□□□□ -0.61
ATG4A-202ENST00000345734 VPS72Q15906 364 aa11.24□□□□□ -0.61
ATG4A-202ENST00000345734 TLR7Q9NYK1 1049 aaKnown RBP11.24□□□□□ -0.61
ATG4A-202ENST00000345734 MYH14Q7Z406 1995 aaKnown RBP11.23□□□□□ -0.61
ATG4A-202ENST00000345734 KCNQ2O43526 872 aa11.23□□□□□ -0.61
ATG4A-202ENST00000345734 REC8O95072 547 aa11.23□□□□□ -0.61
ATG4A-202ENST00000345734 CD2BP2O95400 341 aaKnown RBP11.23□□□□□ -0.61
ATG4A-202ENST00000345734 ECHDC1Q9NTX5 307 aa11.23□□□□□ -0.61
ATG4A-202ENST00000345734 GLRX3O76003 335 aaKnown RBP11.23□□□□□ -0.61
ATG4A-202ENST00000345734 DNAJB2P25686 324 aa11.23□□□□□ -0.61
ATG4A-202ENST00000345734 HSCBQ8IWL3 235 aa11.23□□□□□ -0.61
ATG4A-202ENST00000345734 FNBP4Q8N3X1 1017 aaPredicted RBP11.23□□□□□ -0.61
ATG4A-202ENST00000345734 RDH13Q8NBN7 331 aa11.23□□□□□ -0.61
ATG4A-202ENST00000345734 IL25Q9H293 177 aa11.23□□□□□ -0.61
ATG4A-202ENST00000345734 RAD21O60216 631 aa11.22□□□□□ -0.61
ATG4A-202ENST00000345734 GPTP24298 496 aa11.22□□□□□ -0.61
ATG4A-202ENST00000345734 ATP6V1AP38606 617 aa11.22□□□□□ -0.61
ATG4A-202ENST00000345734 TFCP2Q12800 502 aa11.22□□□□□ -0.61
ATG4A-202ENST00000345734 SNX21Q969T3 373 aa11.22□□□□□ -0.61
ATG4A-202ENST00000345734 GPATCH3Q96I76 525 aa11.22□□□□□ -0.61
ATG4A-202ENST00000345734 TBC1D2BQ9UPU7 963 aa11.22□□□□□ -0.61
ATG4A-202ENST00000345734 ANKRD36CQ5JPF3 1778 aa11.22□□□□□ -0.61
ATG4A-202ENST00000345734 LOC102724428A0A0B4J2F2 783 aa11.21□□□□□ -0.61
ATG4A-202ENST00000345734 SIK1P57059 783 aa11.21□□□□□ -0.61
ATG4A-202ENST00000345734 TRIM28Q13263 835 aaKnown RBP11.21□□□□□ -0.61
ATG4A-202ENST00000345734 ITPK1Q13572 414 aa11.21□□□□□ -0.61
ATG4A-202ENST00000345734 INTS5Q6P9B9 1019 aaKnown RBP11.21□□□□□ -0.61
ATG4A-202ENST00000345734 CNTROBQ8N137 903 aa11.21□□□□□ -0.61
ATG4A-202ENST00000345734 SYNE4Q8N205 404 aa11.21□□□□□ -0.61
ATG4A-202ENST00000345734 FAM89AQ96GI7 184 aa11.21□□□□□ -0.61
ATG4A-202ENST00000345734 ANTXR1Q9H6X2 564 aa11.21□□□□□ -0.61
ATG4A-202ENST00000345734 TMEM134Q9H6X4 195 aa11.21□□□□□ -0.61
ATG4A-202ENST00000345734 USP21Q9UK80 565 aa11.21□□□□□ -0.61
ATG4A-202ENST00000345734 IL6STP40189 918 aaPredicted RBP11.21□□□□□ -0.62
ATG4A-202ENST00000345734 ZNF594Q96JF6 807 aaPredicted RBP11.21□□□□□ -0.62
ATG4A-202ENST00000345734 TNNI3KQ59H18 835 aa11.2□□□□□ -0.62
ATG4A-202ENST00000345734 ANO2Q9NQ90 1003 aa11.2□□□□□ -0.62
ATG4A-202ENST00000345734 FPGT-TNNI3KV9GXZ4 949 aa11.2□□□□□ -0.62
ATG4A-202ENST00000345734 SPATA31A6Q5VVP1 1343 aa11.2□□□□□ -0.62
ATG4A-202ENST00000345734 PALLDQ8WX93 1383 aa11.2□□□□□ -0.62
ATG4A-202ENST00000345734 PCCAP05165 728 aaPredicted RBP11.2□□□□□ -0.62
ATG4A-202ENST00000345734 CRKLP46109 303 aaKnown RBP11.2□□□□□ -0.62
ATG4A-202ENST00000345734 RSBN1LQ6PCB5 846 aaPredicted RBP11.2□□□□□ -0.62
ATG4A-202ENST00000345734 PTF1AQ7RTS3 328 aa11.2□□□□□ -0.62
ATG4A-202ENST00000345734 ATG9AQ7Z3C6 839 aa11.2□□□□□ -0.62
ATG4A-202ENST00000345734 NLRP10Q86W26 655 aa11.2□□□□□ -0.62
ATG4A-202ENST00000345734 DZIP3Q86Y13 1208 aaKnown RBP11.2□□□□□ -0.62
ATG4A-202ENST00000345734 SULF1Q8IWU6 871 aa11.2□□□□□ -0.62
ATG4A-202ENST00000345734 CCDC85AQ96PX6 553 aaPredicted RBP11.2□□□□□ -0.62
ATG4A-202ENST00000345734 CCDC87Q9NVE4 849 aa11.2□□□□□ -0.62
ATG4A-202ENST00000345734 SPDYE5A6NIY4 337 aa11.19□□□□□ -0.62
ATG4A-202ENST00000345734 HSPA1LP34931 641 aa11.19□□□□□ -0.62
ATG4A-202ENST00000345734 PSEN2P49810 448 aa11.19□□□□□ -0.62
ATG4A-202ENST00000345734 EIF5P55010 431 aaKnown RBP11.19□□□□□ -0.62
ATG4A-202ENST00000345734 RABEP1Q15276 862 aa11.19□□□□□ -0.62
ATG4A-202ENST00000345734 LRRC24Q50LG9 513 aa11.19□□□□□ -0.62
ATG4A-202ENST00000345734 PACS2Q86VP3 889 aa11.19□□□□□ -0.62
ATG4A-202ENST00000345734 ZBTB38Q8NAP3 1195 aaPredicted RBP11.19□□□□□ -0.62
ATG4A-202ENST00000345734 BOLA2Q9H3K6 86 aa11.19□□□□□ -0.62
ATG4A-202ENST00000345734 DBNLQ9UJU6 430 aaKnown RBP11.19□□□□□ -0.62
ATG4A-202ENST00000345734 DIXDC1Q155Q3 683 aa11.18□□□□□ -0.62
ATG4A-202ENST00000345734 NFKBIBQ15653 356 aa11.18□□□□□ -0.62
ATG4A-202ENST00000345734 HSP90AB3PQ58FF7 597 aa11.18□□□□□ -0.62
ATG4A-202ENST00000345734 CWC27Q6UX04 472 aaKnown RBP11.18□□□□□ -0.62
ATG4A-202ENST00000345734 HLA-CQ95604 372 aa11.18□□□□□ -0.62
ATG4A-202ENST00000345734 PUS3Q9BZE2 481 aaKnown RBP11.18□□□□□ -0.62
ATG4A-202ENST00000345734 GDPD2Q9HCC8 539 aa11.18□□□□□ -0.62
ATG4A-202ENST00000345734 PALD1Q9ULE6 856 aa11.18□□□□□ -0.62
ATG4A-202ENST00000345734 MYH3P11055 1940 aa11.18□□□□□ -0.62
ATG4A-202ENST00000345734 RREB1Q92766 1687 aa11.18□□□□□ -0.62
ATG4A-202ENST00000345734 ERVV-1B6SEH8 477 aa11.18□□□□□ -0.62
ATG4A-202ENST00000345734 SGSM2O43147 1006 aa11.18□□□□□ -0.62
ATG4A-202ENST00000345734 MTMR14Q8NCE2 650 aa11.18□□□□□ -0.62
ATG4A-202ENST00000345734 PLA2G12BQ9BX93 195 aa11.18□□□□□ -0.62
ATG4A-202ENST00000345734 COL5A3P25940 1745 aaPredicted RBP11.18□□□□□ -0.62
ATG4A-202ENST00000345734 PSDA5PKW4 1024 aaPredicted RBP11.17□□□□□ -0.62
ATG4A-202ENST00000345734 KCNQ4P56696 695 aa11.17□□□□□ -0.62
ATG4A-202ENST00000345734 FAM182BQ5T319 152 aa11.17□□□□□ -0.62
ATG4A-202ENST00000345734 MEX3CQ5U5Q3 659 aaKnown RBP11.17□□□□□ -0.62
ATG4A-202ENST00000345734 EVI5LQ96CN4 794 aa11.17□□□□□ -0.62
ATG4A-202ENST00000345734 DBNDD2Q9BQY9 259 aa11.17□□□□□ -0.62
ATG4A-202ENST00000345734 SEPT9Q9UHD8 586 aaPredicted RBP11.17□□□□□ -0.62
ATG4A-202ENST00000345734 UBN2Q6ZU65 1347 aa11.17□□□□□ -0.62
ATG4A-202ENST00000345734 CICQ96RK0 1608 aaPredicted RBP11.17□□□□□ -0.62
ATG4A-202ENST00000345734 THSD7AQ9UPZ6 1657 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms