RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CATIPQ7Z7H3 387 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 KRT23Q9C075 422 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 CEP83Q9Y592 693 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 FSTL1Q12841 308 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 DZIP1LQ8IYY4 767 aaKnown RBP9.79□□□□□ -0.84
HMGB1-203ENST00000341423 CAMSAP2Q08AD1 1489 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 ABCC5O15440 1437 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 SSX2IPQ9Y2D8 614 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 ATP11BQ9Y2G3 1177 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 MAP3K2Q9Y2U5 619 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 PARD3Q8TEW0 1356 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 XDHP47989 1333 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 GNAT1P11488 350 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 RNF180Q86T96 592 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 MICALL2Q8IY33 904 aa9.79□□□□□ -0.84
HMGB1-203ENST00000341423 ST18O60284 1047 aa9.78□□□□□ -0.84
HMGB1-203ENST00000341423 POLIQ9UNA4 740 aa9.78□□□□□ -0.84
HMGB1-203ENST00000341423 KIF7Q2M1P5 1343 aa9.78□□□□□ -0.84
HMGB1-203ENST00000341423 M0R2C6 588 aa9.78□□□□□ -0.84
HMGB1-203ENST00000341423 MARCKSP29966 332 aaPredicted RBP9.78□□□□□ -0.84
HMGB1-203ENST00000341423 CHRNA5P30532 468 aa9.78□□□□□ -0.84
HMGB1-203ENST00000341423 TMOD1P28289 359 aa9.78□□□□□ -0.84
HMGB1-203ENST00000341423 FAM161AQ3B820 660 aa9.78□□□□□ -0.84
HMGB1-203ENST00000341423 GLT1D1Q96MS3 346 aa9.78□□□□□ -0.84
HMGB1-203ENST00000341423 MAPK8IP2Q13387 824 aaPredicted RBP9.77□□□□□ -0.84
HMGB1-203ENST00000341423 CAPNS2Q96L46 248 aa9.77□□□□□ -0.84
HMGB1-203ENST00000341423 RNMTO43148 476 aaKnown RBP9.77□□□□□ -0.85
HMGB1-203ENST00000341423 PPP2R5DQ14738 602 aa9.77□□□□□ -0.85
HMGB1-203ENST00000341423 DRC7Q8IY82 874 aa9.77□□□□□ -0.85
HMGB1-203ENST00000341423 GTF3C2Q8WUA4 911 aaPredicted RBP9.77□□□□□ -0.85
HMGB1-203ENST00000341423 FAM135BQ49AJ0 1406 aa9.77□□□□□ -0.85
HMGB1-203ENST00000341423 TRIM75PA6NK02 468 aa9.77□□□□□ -0.85
HMGB1-203ENST00000341423 GTF2A2P52657 109 aa9.77□□□□□ -0.85
HMGB1-203ENST00000341423 BARGINQ6ZT62 677 aa9.77□□□□□ -0.85
HMGB1-203ENST00000341423 USP37Q86T82 979 aa9.77□□□□□ -0.85
HMGB1-203ENST00000341423 WASF1Q92558 559 aa9.77□□□□□ -0.85
HMGB1-203ENST00000341423 LRRC45Q96CN5 670 aa9.77□□□□□ -0.85
HMGB1-203ENST00000341423 WRNIP1Q96S55 665 aa9.77□□□□□ -0.85
HMGB1-203ENST00000341423 KIF20AO95235 890 aa9.77□□□□□ -0.85
HMGB1-203ENST00000341423 PIP4K2AP48426 406 aaPredicted RBP9.77□□□□□ -0.85
HMGB1-203ENST00000341423 GNAQP50148 359 aa9.77□□□□□ -0.85
HMGB1-203ENST00000341423 SUGP1Q8IWZ8 645 aaKnown RBP9.77□□□□□ -0.85
HMGB1-203ENST00000341423 ERMNQ8TAM6 284 aa9.77□□□□□ -0.85
HMGB1-203ENST00000341423 POTEB2H3BUK9 544 aa9.76□□□□□ -0.85
HMGB1-203ENST00000341423 IL6STP40189 918 aaPredicted RBP9.76□□□□□ -0.85
HMGB1-203ENST00000341423 SCNN1DP51172 638 aa9.76□□□□□ -0.85
HMGB1-203ENST00000341423 SLC8A3P57103 927 aa9.76□□□□□ -0.85
HMGB1-203ENST00000341423 NECAB2Q7Z6G3 386 aa9.76□□□□□ -0.85
HMGB1-203ENST00000341423 HOMER1Q86YM7 354 aa9.76□□□□□ -0.85
HMGB1-203ENST00000341423 NUDT12Q9BQG2 462 aa9.76□□□□□ -0.85
HMGB1-203ENST00000341423 MYCLP12524 364 aaPredicted RBP9.76□□□□□ -0.85
HMGB1-203ENST00000341423 UBE2OQ9C0C9 1292 aaKnown RBP9.76□□□□□ -0.85
HMGB1-203ENST00000341423 MAGI3Q5TCQ9 1506 aa9.76□□□□□ -0.85
HMGB1-203ENST00000341423 RPS12P25398 132 aaKnown RBP9.76□□□□□ -0.85
HMGB1-203ENST00000341423 Q3C1V9 767 aa9.76□□□□□ -0.85
HMGB1-203ENST00000341423 ENGASEQ8NFI3 743 aa9.76□□□□□ -0.85
HMGB1-203ENST00000341423 GANCQ8TET4 914 aa9.76□□□□□ -0.85
HMGB1-203ENST00000341423 CHMP5Q9NZZ3 219 aa9.76□□□□□ -0.85
HMGB1-203ENST00000341423 COMMD10Q9Y6G5 202 aa9.76□□□□□ -0.85
HMGB1-203ENST00000341423 RPS6KC1Q96S38 1066 aa9.76□□□□□ -0.85
HMGB1-203ENST00000341423 ZNF790Q6PG37 636 aa9.76□□□□□ -0.85
HMGB1-203ENST00000341423 NLRX1Q86UT6 975 aa9.76□□□□□ -0.85
HMGB1-203ENST00000341423 AAASQ9NRG9 546 aa9.76□□□□□ -0.85
HMGB1-203ENST00000341423 TRPC6Q9Y210 931 aa9.76□□□□□ -0.85
HMGB1-203ENST00000341423 LEMD3Q9Y2U8 911 aa9.76□□□□□ -0.85
HMGB1-203ENST00000341423 DUOX2Q9NRD8 1548 aa9.75□□□□□ -0.85
HMGB1-203ENST00000341423 COPB2P35606 906 aa9.75□□□□□ -0.85
HMGB1-203ENST00000341423 ATP6V1DQ9Y5K8 247 aa9.75□□□□□ -0.85
HMGB1-203ENST00000341423 PRPF40BQ6NWY9 871 aaKnown RBP9.75□□□□□ -0.85
HMGB1-203ENST00000341423 ANKRD13AQ8IZ07 590 aa9.75□□□□□ -0.85
HMGB1-203ENST00000341423 CSRNP1Q96S65 589 aa9.75□□□□□ -0.85
HMGB1-203ENST00000341423 USP6P35125 1406 aa9.75□□□□□ -0.85
HMGB1-203ENST00000341423 MAGEB6P1A0A0J9YX57 407 aa9.75□□□□□ -0.85
HMGB1-203ENST00000341423 CCDC194A0A1B0GVG4 234 aa9.75□□□□□ -0.85
HMGB1-203ENST00000341423 MYL3P08590 195 aa9.75□□□□□ -0.85
HMGB1-203ENST00000341423 RARBP10826 455 aa9.75□□□□□ -0.85
HMGB1-203ENST00000341423 DMWDQ09019 674 aa9.75□□□□□ -0.85
HMGB1-203ENST00000341423 THUMPD2Q9BTF0 503 aaKnown RBP9.75□□□□□ -0.85
HMGB1-203ENST00000341423 SLC52A2Q9HAB3 445 aa9.75□□□□□ -0.85
HMGB1-203ENST00000341423 SRP68Q9UHB9 627 aaKnown RBP9.75□□□□□ -0.85
HMGB1-203ENST00000341423 INTS3Q68E01 1043 aaKnown RBP9.75□□□□□ -0.85
HMGB1-203ENST00000341423 FAM89AQ96GI7 184 aa9.75□□□□□ -0.85
HMGB1-203ENST00000341423 GGA3Q9NZ52 723 aa9.75□□□□□ -0.85
HMGB1-203ENST00000341423 PLEKHG2Q9H7P9 1386 aa9.75□□□□□ -0.85
HMGB1-203ENST00000341423 RIOK3O14730 519 aaKnown RBP9.74□□□□□ -0.85
HMGB1-203ENST00000341423 A1BGP04217 495 aa9.74□□□□□ -0.85
HMGB1-203ENST00000341423 HSPA1AP0DMV8 641 aaKnown RBP9.74□□□□□ -0.85
HMGB1-203ENST00000341423 HSPA1BP0DMV9 641 aaKnown RBP9.74□□□□□ -0.85
HMGB1-203ENST00000341423 PLEKHH1Q9ULM0 1364 aa9.74□□□□□ -0.85
HMGB1-203ENST00000341423 LEO1Q8WVC0 666 aaPredicted RBP9.74□□□□□ -0.85
HMGB1-203ENST00000341423 SLC28A3Q9HAS3 691 aa9.74□□□□□ -0.85
HMGB1-203ENST00000341423 RUSC2Q8N2Y8 1516 aa9.74□□□□□ -0.85
HMGB1-203ENST00000341423 PCF11O94913 1555 aaKnown RBP9.74□□□□□ -0.85
HMGB1-203ENST00000341423 ARHGEF37A1IGU5 675 aa9.74□□□□□ -0.85
HMGB1-203ENST00000341423 MRPS9P82933 396 aaKnown RBP9.74□□□□□ -0.85
HMGB1-203ENST00000341423 CBX1P83916 185 aa9.74□□□□□ -0.85
HMGB1-203ENST00000341423 EFCAB6Q5THR3 1501 aa9.74□□□□□ -0.85
HMGB1-203ENST00000341423 PGBD3Q8N328 593 aa9.74□□□□□ -0.85
HMGB1-203ENST00000341423 ELP3Q9H9T3 547 aa9.74□□□□□ -0.85
HMGB1-203ENST00000341423 NARFQ9UHQ1 456 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms