RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 NAA16Q6N069 864 aaPredicted RBP4.73□□□□□ -1.65
NEDD4-201ENST00000338963 GIGYF2Q6Y7W6 1299 aaKnown RBP4.73□□□□□ -1.65
NEDD4-201ENST00000338963 SPDL1Q96EA4 605 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 MAML3Q96JK9 1138 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 RPGRIP1Q96KN7 1286 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 MMADHCQ9H3L0 296 aaPredicted RBP4.73□□□□□ -1.65
NEDD4-201ENST00000338963 PPIP5K1Q6PFW1 1433 aa4.73□□□□□ -1.65
NEDD4-201ENST00000338963 TARSL2A2RTX5 802 aaKnown RBP4.72□□□□□ -1.65
NEDD4-201ENST00000338963 RAD21O60216 631 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 COPB2P35606 906 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 ZNF365Q70YC5 407 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 SPDYE1Q8NFV5 336 aaPredicted RBP4.72□□□□□ -1.65
NEDD4-201ENST00000338963 OR8K1Q8NGG5 319 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 SCAND2PQ9GZW5 306 aaPredicted RBP4.72□□□□□ -1.65
NEDD4-201ENST00000338963 KIF9Q9HAQ2 790 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 THOC2Q8NI27 1593 aaKnown RBP4.72□□□□□ -1.65
NEDD4-201ENST00000338963 RASSF10A6NK89 507 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 FLOT1O75955 427 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 PAX3P23760 479 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 NEK2P51955 445 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 CCDC83Q8IWF9 413 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 NFATC2IPQ8NCF5 419 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 RUBCNQ92622 972 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 ZSCAN31Q96LW9 406 aaPredicted RBP4.72□□□□□ -1.65
NEDD4-201ENST00000338963 ARPC5LQ9BPX5 153 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 FUT8Q9BYC5 575 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 ZSCAN9O15535 394 aaPredicted RBP4.72□□□□□ -1.65
NEDD4-201ENST00000338963 PPP1R12BO60237 982 aaPredicted RBP4.72□□□□□ -1.65
NEDD4-201ENST00000338963 TADA3O75528 432 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 URI1O94763 535 aaPredicted RBP4.72□□□□□ -1.65
NEDD4-201ENST00000338963 FMNL1O95466 1100 aaPredicted RBP4.72□□□□□ -1.65
NEDD4-201ENST00000338963 IDO1P14902 403 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 MRPS25P82663 173 aaKnown RBP4.72□□□□□ -1.65
NEDD4-201ENST00000338963 ZBTB17Q13105 803 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 APBB1IPQ7Z5R6 666 aaPredicted RBP4.72□□□□□ -1.65
NEDD4-201ENST00000338963 PLA2G4DQ86XP0 818 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 USP33Q8TEY7 942 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 KCNB2Q92953 911 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 TMED5Q9Y3A6 229 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 MEFVO15553 781 aaPredicted RBP4.72□□□□□ -1.65
NEDD4-201ENST00000338963 CCNHP51946 323 aaPredicted RBP4.72□□□□□ -1.65
NEDD4-201ENST00000338963 PIP4K2BP78356 416 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 MAP7Q14244 749 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 MAGEC2Q9UBF1 373 aaPredicted RBP4.72□□□□□ -1.65
NEDD4-201ENST00000338963 SATB2Q9UPW6 733 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 TMF1P82094 1093 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 PUS10Q3MIT2 529 aaKnown RBP4.72□□□□□ -1.65
NEDD4-201ENST00000338963 CHD1LQ86WJ1 897 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 TTC14Q96N46 770 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 TNMDQ9H2S6 317 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 NOP53Q9NZM5 478 aaKnown RBP4.72□□□□□ -1.65
NEDD4-201ENST00000338963 TFIP11Q9UBB9 837 aaKnown RBP4.72□□□□□ -1.65
NEDD4-201ENST00000338963 NPHP3Q7Z494 1330 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 OATP04181 439 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 CCDC93Q567U6 631 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 CDCA2Q69YH5 1023 aaPredicted RBP4.72□□□□□ -1.65
NEDD4-201ENST00000338963 USP48Q86UV5 1035 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 LRRC8AQ8IWT6 810 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 FAM81BQ96LP2 452 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 PAGR1Q9BTK6 254 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 TMCO1Q9UM00 188 aa4.72□□□□□ -1.65
NEDD4-201ENST00000338963 KDM5BQ9UGL1 1544 aa4.71□□□□□ -1.65
NEDD4-201ENST00000338963 ATP5JP18859 108 aa4.71□□□□□ -1.65
NEDD4-201ENST00000338963 CCDC146Q8IYE0 955 aa4.71□□□□□ -1.65
NEDD4-201ENST00000338963 CCDC155Q8N6L0 562 aa4.71□□□□□ -1.65
NEDD4-201ENST00000338963 GDAP1L1Q96MZ0 367 aa4.71□□□□□ -1.65
NEDD4-201ENST00000338963 CTNNAL1Q9UBT7 734 aa4.71□□□□□ -1.65
NEDD4-201ENST00000338963 RUSC2Q8N2Y8 1516 aa4.71□□□□□ -1.65
NEDD4-201ENST00000338963 PDCP20941 246 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 PPP2R3AQ06190 1150 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 CPLX2Q6PUV4 134 aaKnown RBP4.71□□□□□ -1.66
NEDD4-201ENST00000338963 KCTD17Q8N5Z5 321 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 CCDC28BQ9BUN5 200 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 ATP6V0A2Q9Y487 856 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 CTAGE15A4D2H0 777 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 EXOC5O00471 708 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 TMCC1O94876 653 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 PENKP01210 267 aaPredicted RBP4.71□□□□□ -1.66
NEDD4-201ENST00000338963 EIF2S1P05198 315 aaKnown RBP4.71□□□□□ -1.66
NEDD4-201ENST00000338963 CTAGE8P0CG41 777 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 MRPS35P82673 323 aaKnown RBP4.71□□□□□ -1.66
NEDD4-201ENST00000338963 STX1AQ16623 288 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 CTAGE6Q86UF2 777 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 CTAGE4Q8IX94 777 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 CAGE1Q8TC20 777 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 LMBR1Q8WVP7 490 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 ZNF653Q96CK0 615 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 GORASP1Q9BQQ3 440 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 JADE2Q9NQC1 790 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 ST7Q9NRC1 585 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 ANO10Q9NW15 660 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 DKK3Q9UBP4 350 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 AQRO60306 1485 aaKnown RBP eCLIP4.71□□□□□ -1.66
NEDD4-201ENST00000338963 SMIM24O75264 130 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 USP5P45974 858 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 ST5P78524 1137 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 OSBPL5Q9H0X9 879 aaPredicted RBP4.71□□□□□ -1.66
NEDD4-201ENST00000338963 PAPOLBQ9NRJ5 636 aaKnown RBP4.71□□□□□ -1.66
NEDD4-201ENST00000338963 CCDC141Q6ZP82 1450 aa4.71□□□□□ -1.66
NEDD4-201ENST00000338963 CHMLP26374 656 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms