RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 FSD1Q9BTV5 496 aa18.08■□□□□ 0.48
CCDC88C-202ENST00000334448 C22orf23Q9BZE7 217 aa18.08■□□□□ 0.48
CCDC88C-202ENST00000334448 PDGFDQ9GZP0 370 aaPredicted RBP18.08■□□□□ 0.48
CCDC88C-202ENST00000334448 DIAPH3Q9NSV4 1193 aa18.08■□□□□ 0.48
CCDC88C-202ENST00000334448 TAF1P21675 1872 aa18.07■□□□□ 0.48
CCDC88C-202ENST00000334448 MED23Q9ULK4 1368 aa18.07■□□□□ 0.48
CCDC88C-202ENST00000334448 LTBP1Q14766 1721 aa18.07■□□□□ 0.48
CCDC88C-202ENST00000334448 SEMA3EO15041 775 aa18.07■□□□□ 0.48
CCDC88C-202ENST00000334448 ALDH1B1P30837 517 aa18.07■□□□□ 0.48
CCDC88C-202ENST00000334448 MCAMP43121 646 aa18.07■□□□□ 0.48
CCDC88C-202ENST00000334448 SCARF1Q14162 830 aa18.07■□□□□ 0.48
CCDC88C-202ENST00000334448 SP8Q8IXZ3 490 aa18.07■□□□□ 0.48
CCDC88C-202ENST00000334448 DNAJC2Q99543 621 aaKnown RBP18.07■□□□□ 0.48
CCDC88C-202ENST00000334448 AK9Q5TCS8 1911 aa18.07■□□□□ 0.48
CCDC88C-202ENST00000334448 SNAP23O00161 211 aa18.06■□□□□ 0.48
CCDC88C-202ENST00000334448 TTF1Q15361 905 aaPredicted RBP18.06■□□□□ 0.48
CCDC88C-202ENST00000334448 LRRFIP1Q32MZ4 808 aaKnown RBP18.06■□□□□ 0.48
CCDC88C-202ENST00000334448 FBXO33Q7Z6M2 555 aa18.06■□□□□ 0.48
CCDC88C-202ENST00000334448 IL17RAQ96F46 866 aa18.06■□□□□ 0.48
CCDC88C-202ENST00000334448 USP26Q9BXU7 913 aa18.06■□□□□ 0.48
CCDC88C-202ENST00000334448 ATP6V0A2Q9Y487 856 aa18.06■□□□□ 0.48
CCDC88C-202ENST00000334448 GOLIM4O00461 696 aa18.05■□□□□ 0.48
CCDC88C-202ENST00000334448 ZFYP08048 801 aaPredicted RBP18.05■□□□□ 0.48
CCDC88C-202ENST00000334448 ANP32AP39687 249 aaKnown RBP18.05■□□□□ 0.48
CCDC88C-202ENST00000334448 RASGRF1Q13972 1273 aa18.05■□□□□ 0.48
CCDC88C-202ENST00000334448 EDC3Q96F86 508 aaKnown RBP18.05■□□□□ 0.48
CCDC88C-202ENST00000334448 FAM84BQ96KN1 310 aaPredicted RBP18.05■□□□□ 0.48
CCDC88C-202ENST00000334448 MTFR1LQ9H019 292 aa18.05■□□□□ 0.48
CCDC88C-202ENST00000334448 GNL3LQ9NVN8 582 aaKnown RBP18.05■□□□□ 0.48
CCDC88C-202ENST00000334448 HMG20BQ9P0W2 317 aa18.05■□□□□ 0.48
CCDC88C-202ENST00000334448 AKAP11Q9UKA4 1901 aa18.05■□□□□ 0.48
CCDC88C-202ENST00000334448 PPEF1O14829 653 aaPredicted RBP18.04■□□□□ 0.48
CCDC88C-202ENST00000334448 IGSF3O75054 1194 aa18.04■□□□□ 0.48
CCDC88C-202ENST00000334448 ATP2B4P23634 1241 aa18.04■□□□□ 0.48
CCDC88C-202ENST00000334448 ZAP70P43403 619 aa18.04■□□□□ 0.48
CCDC88C-202ENST00000334448 CAVIN4Q5BKX8 364 aa18.04■□□□□ 0.48
CCDC88C-202ENST00000334448 C2CD5Q86YS7 1000 aa18.04■□□□□ 0.48
CCDC88C-202ENST00000334448 SPATA5Q8NB90 893 aa18.04■□□□□ 0.48
CCDC88C-202ENST00000334448 IL25Q9H293 177 aa18.04■□□□□ 0.48
CCDC88C-202ENST00000334448 KIF13BQ9NQT8 1826 aa18.03■□□□□ 0.48
CCDC88C-202ENST00000334448 H0YIN7 160 aa18.03■□□□□ 0.48
CCDC88C-202ENST00000334448 KCNJ4P48050 445 aa18.03■□□□□ 0.48
CCDC88C-202ENST00000334448 BCAMP50895 628 aa18.03■□□□□ 0.48
CCDC88C-202ENST00000334448 NMIQ13287 307 aaPredicted RBP18.03■□□□□ 0.48
CCDC88C-202ENST00000334448 CYP2E1P05181 493 aaPredicted RBP18.02■□□□□ 0.48
CCDC88C-202ENST00000334448 GPSM2P81274 684 aa18.02■□□□□ 0.48
CCDC88C-202ENST00000334448 FKBP4Q02790 459 aaKnown RBP eCLIP18.02■□□□□ 0.48
CCDC88C-202ENST00000334448 ZMYM1Q5SVZ6 1142 aa18.02■□□□□ 0.48
CCDC88C-202ENST00000334448 CWC27Q6UX04 472 aaKnown RBP18.02■□□□□ 0.48
CCDC88C-202ENST00000334448 LSG1Q9H089 658 aaKnown RBP18.02■□□□□ 0.48
CCDC88C-202ENST00000334448 ANTXR1Q9H6X2 564 aa18.02■□□□□ 0.48
CCDC88C-202ENST00000334448 HELLSQ9NRZ9 838 aa18.02■□□□□ 0.48
CCDC88C-202ENST00000334448 NDUFB9Q9Y6M9 179 aa18.02■□□□□ 0.48
CCDC88C-202ENST00000334448 DLEC1Q9Y238 1755 aa18.02■□□□□ 0.47
CCDC88C-202ENST00000334448 COL1A1P02452 1464 aaPredicted RBP18.01■□□□□ 0.47
CCDC88C-202ENST00000334448 DUOX1Q9NRD9 1551 aa18.01■□□□□ 0.47
CCDC88C-202ENST00000334448 SNED1Q8TER0 1413 aa18.01■□□□□ 0.47
CCDC88C-202ENST00000334448 A0A0D9SFI3 127 aa18.01■□□□□ 0.47
CCDC88C-202ENST00000334448 RNF113AO15541 343 aaKnown RBP18.01■□□□□ 0.47
CCDC88C-202ENST00000334448 ZSCAN25Q6NSZ9 544 aa18.01■□□□□ 0.47
CCDC88C-202ENST00000334448 TMED8Q6PL24 325 aaPredicted RBP18.01■□□□□ 0.47
CCDC88C-202ENST00000334448 PI16Q6UXB8 463 aa18.01■□□□□ 0.47
CCDC88C-202ENST00000334448 CNKSR1Q969H4 720 aa18.01■□□□□ 0.47
CCDC88C-202ENST00000334448 FAM227BQ96M60 508 aa18.01■□□□□ 0.47
CCDC88C-202ENST00000334448 ANKIB1Q9P2G1 1089 aa18.01■□□□□ 0.47
CCDC88C-202ENST00000334448 GGA1Q9UJY5 639 aa18.01■□□□□ 0.47
CCDC88C-202ENST00000334448 DENND2AQ9ULE3 1009 aa18.01■□□□□ 0.47
CCDC88C-202ENST00000334448 WTIPA6NIX2 430 aaPredicted RBP18■□□□□ 0.47
CCDC88C-202ENST00000334448 HIBADHP31937 336 aaKnown RBP18■□□□□ 0.47
CCDC88C-202ENST00000334448 GYG1P46976 350 aa18■□□□□ 0.47
CCDC88C-202ENST00000334448 ANAPC15P60006 121 aa18■□□□□ 0.47
CCDC88C-202ENST00000334448 DDX24Q9GZR7 859 aaKnown RBP eCLIP18■□□□□ 0.47
CCDC88C-202ENST00000334448 ANO2Q9NQ90 1003 aa18■□□□□ 0.47
CCDC88C-202ENST00000334448 KLRK1P26718 216 aa17.99■□□□□ 0.47
CCDC88C-202ENST00000334448 UBE3CQ15386 1083 aa17.99■□□□□ 0.47
CCDC88C-202ENST00000334448 CC2D2BQ6DHV5 1058 aa17.99■□□□□ 0.47
CCDC88C-202ENST00000334448 IL27Q8NEV9 243 aa17.99■□□□□ 0.47
CCDC88C-202ENST00000334448 TBC1D16Q8TBP0 767 aa17.99■□□□□ 0.47
CCDC88C-202ENST00000334448 C7orf43Q8WVR3 580 aa17.99■□□□□ 0.47
CCDC88C-202ENST00000334448 KIF2CQ99661 725 aa17.99■□□□□ 0.47
CCDC88C-202ENST00000334448 SGIP1Q9BQI5 828 aa17.99■□□□□ 0.47
CCDC88C-202ENST00000334448 PIH1D3Q9NQM4 214 aaKnown RBP17.99■□□□□ 0.47
CCDC88C-202ENST00000334448 DOCK2Q92608 1830 aa17.99■□□□□ 0.47
CCDC88C-202ENST00000334448 CCDC171Q6TFL3 1326 aa17.98■□□□□ 0.47
CCDC88C-202ENST00000334448 UFL1O94874 794 aa17.98■□□□□ 0.47
CCDC88C-202ENST00000334448 ADD2P35612 726 aa17.98■□□□□ 0.47
CCDC88C-202ENST00000334448 MCMDC2Q4G0Z9 681 aa17.98■□□□□ 0.47
CCDC88C-202ENST00000334448 PRPF40BQ6NWY9 871 aaKnown RBP17.98■□□□□ 0.47
CCDC88C-202ENST00000334448 KIAA1211Q6ZU35 1233 aa17.98■□□□□ 0.47
CCDC88C-202ENST00000334448 SLC51AQ86UW1 340 aa17.98■□□□□ 0.47
CCDC88C-202ENST00000334448 APPBP2Q92624 585 aa17.98■□□□□ 0.47
CCDC88C-202ENST00000334448 DDRGK1Q96HY6 314 aa17.98■□□□□ 0.47
CCDC88C-202ENST00000334448 NSFL1CQ9UNZ2 370 aaKnown RBP17.98■□□□□ 0.47
CCDC88C-202ENST00000334448 SALL1Q9NSC2 1324 aa17.98■□□□□ 0.47
CCDC88C-202ENST00000334448 MCCP23508 829 aa17.97■□□□□ 0.47
CCDC88C-202ENST00000334448 POLD1P28340 1107 aa17.97■□□□□ 0.47
CCDC88C-202ENST00000334448 HSPA4P34932 840 aa17.97■□□□□ 0.47
CCDC88C-202ENST00000334448 R3HDM1Q15032 1099 aaKnown RBP17.97■□□□□ 0.47
CCDC88C-202ENST00000334448 GRIPAP1Q4V328 841 aa17.97■□□□□ 0.47
CCDC88C-202ENST00000334448 ZNF804AQ7Z570 1209 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms