RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 H2AFB2P0C5Z0 115 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 HBA1P69905 142 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF616Q08AN1 781 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 RPL22L1Q6P5R6 122 aaKnown RBP4.5□□□□□ -1.69
SCN1A-218ENST00000640036 DPY19L2P2Q6ZN68 376 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 CASTOR1Q8WTX7 329 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 FYTTD1Q96QD9 318 aaKnown RBP4.5□□□□□ -1.69
SCN1A-218ENST00000640036 AMBNQ9NP70 447 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 GAR1Q9NY12 217 aaKnown RBP4.5□□□□□ -1.69
SCN1A-218ENST00000640036 OR6C3Q9NZP0 311 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 MED13Q9UHV7 2174 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 C3orf80F5H4A9 247 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 RAF1P04049 648 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 PROX2Q3B8N5 592 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 ATP1A1-AS1Q5TC04 95 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 CEACAM19Q7Z692 300 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 ANKRD13BQ86YJ7 626 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 KLHDC8BQ8IXV7 354 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 MFSD4AQ8N468 514 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF596Q8TC21 504 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF501Q96CX3 271 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-218ENST00000640036 KIRREL1Q96J84 757 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 HYLS1Q96M11 299 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 CXXC4Q9H2H0 198 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 SIRT5Q9NXA8 310 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 ASH2LQ9UBL3 628 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 MRPS14O60783 128 aaKnown RBP4.5□□□□□ -1.69
SCN1A-218ENST00000640036 NRASP01111 189 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 PCOLCEQ15113 449 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 KIRREL2Q6UWL6 708 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 TMPRSS11FQ6ZWK6 438 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 SORCS2Q96PQ0 1159 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 C20orf24Q9BUV8 137 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 PDFQ9HBH1 243 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF629Q9UEG4 869 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-218ENST00000640036 CDHR4A6H8M9 788 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 FAM157AC9JC47 383 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 IGLV3-25P01717 112 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 FAM106CPP0CH98 169 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 ORM2P19652 201 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 RAB6AP20340 208 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 SELENOWP63302 87 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF91Q05481 1191 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 TIGITQ495A1 244 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 RAB6CQ53S08 254 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 HIST2H3AQ71DI3 136 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 ST6GALNAC3Q8NDV1 305 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 OLIG1Q8TAK6 271 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 SLC25A40Q8TBP6 338 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 TMEM158Q8WZ71 300 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 COX14Q96I36 57 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 RAB6CQ9H0N0 254 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 C7orf69Q9H7B7 122 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 HEYLQ9NQ87 328 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-218ENST00000640036 FAM212BQ9NTI7 297 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-218ENST00000640036 PPIAL4EA0A075B759 164 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 KCNE1BA0A087WTH5 132 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 PPIAL4DF5H284 164 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 MITFO75030 526 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-218ENST00000640036 TPPPO94811 219 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 MPZL1O95297 269 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 PPIAL4FP0DN26 164 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 HLA-DOBP13765 273 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 CRISP2P16562 243 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 RAB5AP20339 215 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 BDKRB2P30411 391 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 C11orf91Q3C1V1 193 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 CCSMST1Q4G0I0 132 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 CDC20BQ86Y33 519 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 OR6S1Q8NH40 331 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 TAMM41Q96BW9 452 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 REEP6Q96HR9 211 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 SLC35E1Q96K37 410 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 SDF2Q99470 211 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 DPCDQ9BVM2 203 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-218ENST00000640036 MFFQ9GZY8 342 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 ZCCHC4Q9H5U6 513 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.5□□□□□ -1.69
SCN1A-218ENST00000640036 PPIAL4AQ9Y536 164 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 OR6C68A6NDL8 312 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 ANKRD65E5RJM6 399 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 WNT1P04628 370 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 HOXB1P14653 301 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-218ENST00000640036 AMTP48728 403 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 SNRPGP62308 76 aaKnown RBP4.5□□□□□ -1.69
SCN1A-218ENST00000640036 SKP2Q13309 424 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 SLC38A6Q8IZM9 456 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 CLIP4Q8N3C7 705 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 GTPBP8Q8N3Z3 284 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-218ENST00000640036 OR5T1Q8NG75 326 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 TMEM174Q8WUU8 243 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 NPFFR1Q9GZQ6 430 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 WDR76Q9H967 626 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 LIN7BQ9HAP6 207 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 INSIG2Q9Y5U4 225 aa4.5□□□□□ -1.69
SCN1A-218ENST00000640036 KIR2DS1A0A191URI9 304 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 TMEM72A0PK05 275 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 IMPA2O14732 288 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 PPP1R2P9O14990 202 aa4.49□□□□□ -1.69
SCN1A-218ENST00000640036 SYNGR3O43761 229 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms