RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 DLEC1Q9Y238 1755 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 IGKV6D-41A0A0C4DH26 115 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 IGHV2-70DA0A0C4DH43 119 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 A0A0U1RQK1 487 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 HSD17B6O14756 317 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 TMPRSS11DO60235 418 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 DUS4LO95620 317 aaKnown RBP5.17□□□□□ -1.58
SCN1A-216ENST00000637968 CSTBP04080 98 aaKnown RBP5.17□□□□□ -1.58
SCN1A-216ENST00000637968 GAPDHP04406 335 aaKnown RBP5.17□□□□□ -1.58
SCN1A-216ENST00000637968 APODP05090 189 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 SEC11BP0C7V7 166 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 CCL5P13501 91 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 SIRPAP78324 504 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 PKDCCQ504Y2 493 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 OR8I2Q8N0Y5 310 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 TMEM99Q8N816 258 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 ZDHHC22Q8N966 263 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 ZNF784Q8NCA9 323 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-216ENST00000637968 OR2G3Q8NGZ4 309 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 ZNF417Q8TAU3 575 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 KCNE4Q8WWG9 221 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 RBMXL1Q96E39 390 aaKnown RBP5.17□□□□□ -1.58
SCN1A-216ENST00000637968 NPY6RQ99463 290 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 PTPN18Q99952 460 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 P4HTMQ9NXG6 502 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 RNF186Q9NXI6 227 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 ZNF107Q9UII5 783 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-216ENST00000637968 RALYQ9UKM9 306 aaKnown RBP5.17□□□□□ -1.58
SCN1A-216ENST00000637968 LRP5O75197 1615 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 UPK3BL1B0FP48 263 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 DIRC3C9JPN6 131 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 UPK3BL2E5RIL1 263 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 FAM72CH0Y354 149 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 H0YL77 283 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 RBFOX2O43251 390 aaKnown RBP eCLIP5.17□□□□□ -1.58
SCN1A-216ENST00000637968 SLCO2B1O94956 709 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 PPICP45877 212 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 ERVS71-1P61550 626 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 HGFACQ04756 655 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 ZNF750Q32MQ0 723 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 AMZ1Q400G9 498 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 LY6G6FQ5SQ64 297 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 FAM72AQ5TYM5 149 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 C9orf135Q5VTT2 229 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 FAM72DQ6L9T8 149 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 ZNF880Q6PDB4 577 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 CLEC18BQ6UXF7 455 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 RPTNQ6XPR3 784 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 ANKRD33Q7Z3H0 272 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 FAM72BQ86X60 149 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 ZNF761Q86XN6 746 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-216ENST00000637968 COX18Q8N8Q8 333 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 CYB561A3Q8NBI2 242 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 BHLHE23Q8NDY6 225 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 OR2M7Q8NG81 312 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 OR4N2Q8NGD1 307 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 OR2V1Q8NHB1 315 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 ABHD5Q8WTS1 349 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 ASB5Q8WWX0 329 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 CXorf40BQ96DE9 158 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 PRRC1Q96M27 445 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 SLC46A1Q96NT5 459 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 ARHGDIGQ99819 225 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 FAM103A1Q9BTL3 118 aaKnown RBP5.17□□□□□ -1.58
SCN1A-216ENST00000637968 HCAR1Q9BXC0 346 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 CCL27Q9Y4X3 112 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 LTBP4Q8N2S1 1624 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 SLC25A14O95258 325 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-216ENST00000637968 ZNF865P0CJ78 1059 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-216ENST00000637968 ADRA1AP35348 466 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 VEGFBP49765 207 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 CRYBA4P53673 196 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 RUNX2Q13950 521 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 ZNF266Q14584 549 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 CLEC12BQ2HXU8 276 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 GPR157Q5UAW9 335 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 SYT13Q7L8C5 426 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 C5orf24Q7Z6I8 188 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 ZNF467Q7Z7K2 595 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-216ENST00000637968 MEX3DQ86XN8 651 aaKnown RBP5.16□□□□□ -1.58
SCN1A-216ENST00000637968 OR5AR1Q8NGP9 310 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 SLAMF6Q96DU3 332 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 AQP10Q96PS8 301 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 HSPB9Q9BQS6 159 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 MFRPQ9BY79 579 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 DSPPQ9NZW4 1301 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 ZBTB42B2RXF5 422 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 C9JQL5 133 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 M0R3H8 397 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 SYNGR4O95473 234 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 ESDP10768 282 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 FUT3P21217 361 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 FBLP22087 321 aaKnown RBP5.16□□□□□ -1.58
SCN1A-216ENST00000637968 OMGP23515 440 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 OTX1P32242 354 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-216ENST00000637968 SLC6A9P48067 706 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 CDKN1CP49918 316 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-216ENST00000637968 NPY4RP50391 375 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 CLDN6P56747 220 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 RAB38P57729 211 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms