RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 HAVCR1Q96D42 359 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 STARD4Q96DR4 205 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 SLC25A38Q96DW6 304 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 FAM71F1Q96KD3 344 aaPredicted RBP9.19□□□□□ -0.94
CLN3-248ENST00000636355 LYZL4Q96KX0 146 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 ZNF75AQ96N20 296 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 NUDT16L1Q9BRJ7 211 aaKnown RBP9.19□□□□□ -0.94
CLN3-248ENST00000636355 OR10A4Q9H209 315 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 TBCCD1Q9NVR7 557 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 RHBDL2Q9NX52 303 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 ZNF319Q9P2F9 582 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 EXTL2Q9UBQ6 330 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 GHRLQ9UBU3 117 aa9.19□□□□□ -0.94
CLN3-248ENST00000636355 CHD6Q8TD26 2715 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 LOC100509620A0A075B734 347 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 A0A096LPE4 126 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 A0A1W2PPZ6 126 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 CIB4A0PJX0 185 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 WISP2O76076 250 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 PAHP00439 452 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 IGKV3-15P01624 115 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 IL7P13232 177 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 SNRPBP14678 240 aaKnown RBP9.18□□□□□ -0.94
CLN3-248ENST00000636355 ZNF14P17017 642 aaPredicted RBP9.18□□□□□ -0.94
CLN3-248ENST00000636355 PRKACBP22694 351 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 ALDH3B1P43353 468 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 FOXG1P55316 489 aaPredicted RBP9.18□□□□□ -0.94
CLN3-248ENST00000636355 SCN1BQ07699 218 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 IL18Q14116 193 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 GFOD2Q3B7J2 385 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 HIKESHIQ53FT3 197 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 CLVS2Q5SYC1 327 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 GLYATL3Q5SZD4 288 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 HES5Q5TA89 166 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 C9orf135Q5VTT2 229 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 OR2W3Q7Z3T1 314 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 MRGPRGQ86SM5 289 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 OR5AS1Q8N127 324 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 CISD2Q8N5K1 135 aaKnown RBP9.18□□□□□ -0.94
CLN3-248ENST00000636355 PNLDC1Q8NA58 520 aaKnown RBP9.18□□□□□ -0.94
CLN3-248ENST00000636355 DNAAF1Q8NEP3 725 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 CSNK2A3Q8NEV1 391 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 SLC30A7Q8NEW0 376 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 OR13C9Q8NGT0 318 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 DEDD2Q8WXF8 326 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 SLC7A6Q92536 515 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 PIGTQ969N2 578 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 FAM3DQ96BQ1 224 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 ORAI1Q96D31 301 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 SNRNP40Q96DI7 357 aaKnown RBP9.18□□□□□ -0.94
CLN3-248ENST00000636355 SDHCQ99643 169 aaPredicted RBP9.18□□□□□ -0.94
CLN3-248ENST00000636355 PIEZO2Q9H5I5 2752 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 ZNF71Q9NQZ8 489 aaPredicted RBP9.18□□□□□ -0.94
CLN3-248ENST00000636355 LUZP4Q9P127 313 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 ZNF629Q9UEG4 869 aaPredicted RBP9.18□□□□□ -0.94
CLN3-248ENST00000636355 OR5V1Q9UGF6 321 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 USP24Q9UPU5 2620 aa9.18□□□□□ -0.94
CLN3-248ENST00000636355 ATMQ13315 3056 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 BOD1L1Q8NFC6 3051 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 ZNF816-ZNF321PA0A0X1KG74 233 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 C5orf49A4QMS7 147 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 ZNF503-AS2A6NEH8 195 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 OR5H1A6NKK0 313 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 LDLRAD4O15165 306 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 GSTZ1O43708 216 aaPredicted RBP9.17□□□□□ -0.94
CLN3-248ENST00000636355 RAD51DO75771 328 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 TOXO94900 526 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 IGLV1-44P01699 117 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 PATE4P0C8F1 98 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 GLI4P10075 376 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 ARSBP15848 533 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 CBR1P16152 277 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 POU3F4P49335 361 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 MMP15P51511 669 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 ASAH1Q13510 395 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 PYDC2Q56P42 97 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 TRIQKQ629K1 86 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 STEAP3Q658P3 488 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 RAB12Q6IQ22 244 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 MDP1Q86V88 176 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 ZNF584Q8IVC4 421 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 Q8N402 240 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 JAGN1Q8N5M9 183 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 ST6GALNAC3Q8NDV1 305 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 OR4M1Q8NGD0 313 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 OR51A2Q8NGJ7 313 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 UBASH3BQ8TF42 649 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 SLC25A28Q96A46 364 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 SGK3Q96BR1 496 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 ITPKCQ96DU7 683 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 S100A16Q96FQ6 103 aaKnown RBP9.17□□□□□ -0.94
CLN3-248ENST00000636355 WBP1Q96G27 269 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 NOX3Q9HBY0 568 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 ABCB10Q9NRK6 738 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 KCNN3Q9UGI6 736 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 PIGLQ9Y2B2 252 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 RHBDD3Q9Y3P4 386 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 RTTNQ86VV8 2226 aa9.17□□□□□ -0.94
CLN3-248ENST00000636355 SHANK1Q9Y566 2161 aa9.16□□□□□ -0.94
CLN3-248ENST00000636355 MYO7BQ6PIF6 2116 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms