RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 ACBD7Q8N6N7 88 aa15.12■□□□□ 0.01
CLN3-247ENST00000636351 OR10AD1Q8NGE0 317 aa15.12■□□□□ 0.01
CLN3-247ENST00000636351 OR56B2PQ8NGI1 322 aa15.12■□□□□ 0.01
CLN3-247ENST00000636351 DIRC2Q96SL1 478 aa15.12■□□□□ 0.01
CLN3-247ENST00000636351 EGLN1Q9GZT9 426 aa15.12■□□□□ 0.01
CLN3-247ENST00000636351 RGCCQ9H4X1 137 aa15.12■□□□□ 0.01
CLN3-247ENST00000636351 FAM206AQ9NX38 181 aa15.12■□□□□ 0.01
CLN3-247ENST00000636351 NKIRAS2Q9NYR9 191 aa15.12■□□□□ 0.01
CLN3-247ENST00000636351 GNG8Q9UK08 70 aa15.12■□□□□ 0.01
CLN3-247ENST00000636351 EXOGQ9Y2C4 368 aaKnown RBP15.12■□□□□ 0.01
CLN3-247ENST00000636351 R4GMQ9 66 aa15.12■□□□□ 0.01
CLN3-247ENST00000636351 HSPE1-MOB4S4R3N1 261 aa15.12■□□□□ 0.01
CLN3-247ENST00000636351 METTL15A6NJ78 407 aa15.11■□□□□ 0.01
CLN3-247ENST00000636351 H0YJX3 145 aa15.11■□□□□ 0.01
CLN3-247ENST00000636351 LILRA1O75019 489 aa15.11■□□□□ 0.01
CLN3-247ENST00000636351 FADS2O95864 444 aaKnown RBP15.11■□□□□ 0.01
CLN3-247ENST00000636351 DCTDP32321 178 aa15.11■□□□□ 0.01
CLN3-247ENST00000636351 ZNF85Q03923 595 aa15.11■□□□□ 0.01
CLN3-247ENST00000636351 RAB40BQ12829 278 aa15.11■□□□□ 0.01
CLN3-247ENST00000636351 TP53I3Q53FA7 332 aa15.11■□□□□ 0.01
CLN3-247ENST00000636351 Q6ZR03 302 aa15.11■□□□□ 0.01
CLN3-247ENST00000636351 OR13G1Q8NGZ3 307 aa15.11■□□□□ 0.01
CLN3-247ENST00000636351 TFAP2CQ92754 450 aa15.11■□□□□ 0.01
CLN3-247ENST00000636351 SPSB4Q96A44 273 aa15.11■□□□□ 0.01
CLN3-247ENST00000636351 PBOV1Q9GZY1 135 aa15.11■□□□□ 0.01
CLN3-247ENST00000636351 MOB1AQ9H8S9 216 aa15.11■□□□□ 0.01
CLN3-247ENST00000636351 TMEM100Q9NV29 134 aa15.11■□□□□ 0.01
CLN3-247ENST00000636351 ZNF319Q9P2F9 582 aa15.11■□□□□ 0.01
CLN3-247ENST00000636351 YLPM1P49750 1951 aaKnown RBP15.11■□□□□ 0.01
CLN3-247ENST00000636351 ACOD1A6NK06 481 aa15.1■□□□□ 0.01
CLN3-247ENST00000636351 LYNX1G3V0Z9 82 aa15.1■□□□□ 0.01
CLN3-247ENST00000636351 HAX1O00165 279 aa15.1■□□□□ 0.01
CLN3-247ENST00000636351 CDC14BO60729 498 aa15.1■□□□□ 0.01
CLN3-247ENST00000636351 SULT1C4O75897 302 aa15.1■□□□□ 0.01
CLN3-247ENST00000636351 LYNX1P0DP58 116 aa15.1■□□□□ 0.01
CLN3-247ENST00000636351 ISL1P61371 349 aa15.1■□□□□ 0.01
CLN3-247ENST00000636351 ACTA2P62736 377 aa15.1■□□□□ 0.01
CLN3-247ENST00000636351 ACTG2P63267 376 aa15.1■□□□□ 0.01
CLN3-247ENST00000636351 CDK5R2Q13319 367 aa15.1■□□□□ 0.01
CLN3-247ENST00000636351 KLHL22Q53GT1 634 aa15.1■□□□□ 0.01
CLN3-247ENST00000636351 THAP5Q7Z6K1 395 aa15.1■□□□□ 0.01
CLN3-247ENST00000636351 OR52I1Q8NGK6 324 aa15.1■□□□□ 0.01
CLN3-247ENST00000636351 RDH5Q92781 318 aa15.1■□□□□ 0.01
CLN3-247ENST00000636351 SGK3Q96BR1 496 aa15.1■□□□□ 0.01
CLN3-247ENST00000636351 MYCBPQ99417 103 aaPredicted RBP15.1■□□□□ 0.01
CLN3-247ENST00000636351 SLC30A2Q9BRI3 323 aa15.1■□□□□ 0.01
CLN3-247ENST00000636351 ACOXLQ9NUZ1 547 aa15.1■□□□□ 0.01
CLN3-247ENST00000636351 NUFIP1Q9UHK0 495 aaKnown RBP15.1■□□□□ 0.01
CLN3-247ENST00000636351 NOP16Q9Y3C1 178 aaKnown RBP15.1■□□□□ 0.01
CLN3-247ENST00000636351 hCG_38984A0A1B0GV85 526 aa15.09■□□□□ 0.01
CLN3-247ENST00000636351 LOC390937A0A1W2PQ73 354 aa15.09■□□□□ 0.01
CLN3-247ENST00000636351 IRGMA1A4Y4 181 aa15.09■□□□□ 0.01
CLN3-247ENST00000636351 ANKRD30BLA7E2S9 258 aa15.09■□□□□ 0.01
CLN3-247ENST00000636351 J3QRE1 110 aa15.09■□□□□ 0.01
CLN3-247ENST00000636351 ADH4P08319 380 aa15.09■□□□□ 0.01
CLN3-247ENST00000636351 HNF1AP20823 631 aa15.09■□□□□ 0.01
CLN3-247ENST00000636351 HSPA13P48723 471 aa15.09■□□□□ 0.01
CLN3-247ENST00000636351 GSK3AP49840 483 aa15.09■□□□□ 0.01
CLN3-247ENST00000636351 MMP16P51512 607 aa15.09■□□□□ 0.01
CLN3-247ENST00000636351 FAM3AP98173 230 aa15.09■□□□□ 0.01
CLN3-247ENST00000636351 OR8G1Q15617 311 aa15.09■□□□□ 0.01
CLN3-247ENST00000636351 LIPNQ5VXI9 398 aa15.09■□□□□ 0.01
CLN3-247ENST00000636351 ADAT1Q9BUB4 502 aaKnown RBP15.09■□□□□ 0.01
CLN3-247ENST00000636351 ALG8Q9BVK2 526 aa15.09■□□□□ 0.01
CLN3-247ENST00000636351 BPESC1Q9GZL8 116 aa15.09■□□□□ 0.01
CLN3-247ENST00000636351 ZNF391Q9UJN7 358 aa15.09■□□□□ 0.01
CLN3-247ENST00000636351 OR52A1Q9UKL2 312 aa15.09■□□□□ 0.01
CLN3-247ENST00000636351 MYRFQ9Y2G1 1151 aa15.09■□□□□ 0.01
CLN3-247ENST00000636351 SNX5Q9Y5X3 404 aa15.09■□□□□ 0.01
CLN3-247ENST00000636351 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.08■□□□□ 0
CLN3-247ENST00000636351 IGHV1-69-2A0A0G2JMI3 117 aa15.08■□□□□ 0
CLN3-247ENST00000636351 FAM20BO75063 409 aa15.08■□□□□ 0
CLN3-247ENST00000636351 PNPP00491 289 aa15.08■□□□□ 0
CLN3-247ENST00000636351 TGFAP01135 160 aa15.08■□□□□ 0
CLN3-247ENST00000636351 IGHA1P01876 353 aa15.08■□□□□ 0
CLN3-247ENST00000636351 HLA-DPB1P04440 258 aa15.08■□□□□ 0
CLN3-247ENST00000636351 CD55P08174 381 aa15.08■□□□□ 0
CLN3-247ENST00000636351 TACSTD2P09758 323 aa15.08■□□□□ 0
CLN3-247ENST00000636351 CA6P23280 308 aa15.08■□□□□ 0
CLN3-247ENST00000636351 DDOSTP39656 456 aa15.08■□□□□ 0
CLN3-247ENST00000636351 PSMB10P40306 273 aa15.08■□□□□ 0
CLN3-247ENST00000636351 VHLP40337 213 aa15.08■□□□□ 0
CLN3-247ENST00000636351 LHFPL3Q86UP9 236 aa15.08■□□□□ 0
CLN3-247ENST00000636351 ZNF786Q8N393 782 aa15.08■□□□□ 0
CLN3-247ENST00000636351 OR51E1Q8TCB6 317 aa15.08■□□□□ 0
CLN3-247ENST00000636351 ITLN1Q8WWA0 313 aa15.08■□□□□ 0
CLN3-247ENST00000636351 YIPF5Q969M3 257 aa15.08■□□□□ 0
CLN3-247ENST00000636351 FAM71F1Q96KD3 344 aaPredicted RBP15.08■□□□□ 0
CLN3-247ENST00000636351 LYZL4Q96KX0 146 aa15.08■□□□□ 0
CLN3-247ENST00000636351 C4orf36Q96KX1 117 aa15.08■□□□□ 0
CLN3-247ENST00000636351 OR2V2Q96R30 315 aa15.08■□□□□ 0
CLN3-247ENST00000636351 SIGLEC11Q96RL6 698 aa15.08■□□□□ 0
CLN3-247ENST00000636351 SOX7Q9BT81 388 aa15.08■□□□□ 0
CLN3-247ENST00000636351 PAPOLGQ9BWT3 736 aaKnown RBP15.08■□□□□ 0
CLN3-247ENST00000636351 SLC22A4Q9H015 551 aa15.08■□□□□ 0
CLN3-247ENST00000636351 INPP5EQ9NRR6 644 aa15.08■□□□□ 0
CLN3-247ENST00000636351 TREM2Q9NZC2 230 aa15.08■□□□□ 0
CLN3-247ENST00000636351 MRPL15Q9P015 296 aaKnown RBP15.08■□□□□ 0
CLN3-247ENST00000636351 MALRD1Q5VYJ5 2156 aa15.07■□□□□ 0
CLN3-247ENST00000636351 IGHV3-64DA0A0J9YX35 117 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 119.4 ms