RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 MOB1AQ9H8S9 216 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 MRM2Q9UI43 246 aaKnown RBP17.49■□□□□ 0.39
CLN3-240ENST00000631023 FN1P02751 2386 aaKnown RBP17.49■□□□□ 0.39
CLN3-240ENST00000631023 LRRC30A6NM36 301 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 LOC110117498-PIK3R3F6TDL0 507 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 DLGAP1O14490 977 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 CASQ2O14958 399 aaPredicted RBP17.49■□□□□ 0.39
CLN3-240ENST00000631023 SULT1C4O75897 302 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 CD200P41217 278 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 GATA4P43694 442 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 MAB21L1Q13394 359 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 OR8B8Q15620 311 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 PLEKHG7Q6ZR37 379 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 CYGBQ8WWM9 190 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 VCXQ9H320 206 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 NUFIP1Q9UHK0 495 aaKnown RBP17.49■□□□□ 0.39
CLN3-240ENST00000631023 NPTNQ9Y639 398 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 R4GMQ9 66 aa17.49■□□□□ 0.39
CLN3-240ENST00000631023 ZFHX3Q15911 3703 aa17.48■□□□□ 0.39
CLN3-240ENST00000631023 METTL15A6NJ78 407 aa17.48■□□□□ 0.39
CLN3-240ENST00000631023 A8MV72 311 aaPredicted RBP17.48■□□□□ 0.39
CLN3-240ENST00000631023 MAGEB4O15481 346 aaPredicted RBP17.48■□□□□ 0.39
CLN3-240ENST00000631023 GNALP38405 381 aa17.48■□□□□ 0.39
CLN3-240ENST00000631023 C6orf52Q5T4I8 152 aa17.48■□□□□ 0.39
CLN3-240ENST00000631023 OGFRL1Q5TC84 451 aaPredicted RBP17.48■□□□□ 0.39
CLN3-240ENST00000631023 SSX6Q7RTT6 188 aa17.48■□□□□ 0.39
CLN3-240ENST00000631023 MOGAT3Q86VF5 341 aa17.48■□□□□ 0.39
CLN3-240ENST00000631023 COMMD2Q86X83 199 aa17.48■□□□□ 0.39
CLN3-240ENST00000631023 DHRSXQ8N5I4 330 aa17.48■□□□□ 0.39
CLN3-240ENST00000631023 PLPP7Q8NBV4 271 aa17.48■□□□□ 0.39
CLN3-240ENST00000631023 OR8S1Q8NH09 359 aa17.48■□□□□ 0.39
CLN3-240ENST00000631023 MSI2Q96DH6 328 aaKnown RBP17.48■□□□□ 0.39
CLN3-240ENST00000631023 MYCBPQ99417 103 aaPredicted RBP17.48■□□□□ 0.39
CLN3-240ENST00000631023 C14orf119Q9NWQ9 140 aa17.48■□□□□ 0.39
CLN3-240ENST00000631023 AASSQ9UDR5 926 aa17.48■□□□□ 0.39
CLN3-240ENST00000631023 GTF2A1LQ9UNN4 478 aa17.48■□□□□ 0.39
CLN3-240ENST00000631023 SNX5Q9Y5X3 404 aa17.48■□□□□ 0.39
CLN3-240ENST00000631023 NAV3Q8IVL0 2385 aa17.47■□□□□ 0.39
CLN3-240ENST00000631023 IGHV3-64DA0A0J9YX35 117 aa17.47■□□□□ 0.39
CLN3-240ENST00000631023 LOC100289279A0A1B0GTE1 492 aa17.47■□□□□ 0.39
CLN3-240ENST00000631023 ISPDA4D126 451 aa17.47■□□□□ 0.39
CLN3-240ENST00000631023 WNT9BO14905 357 aa17.47■□□□□ 0.39
CLN3-240ENST00000631023 IRF2P14316 349 aa17.47■□□□□ 0.39
CLN3-240ENST00000631023 ATP6V1B1P15313 513 aa17.47■□□□□ 0.39
CLN3-240ENST00000631023 IL2RGP31785 369 aa17.47■□□□□ 0.39
CLN3-240ENST00000631023 MAP2K3P46734 347 aa17.47■□□□□ 0.39
CLN3-240ENST00000631023 RIPPLY3P57055 190 aa17.47■□□□□ 0.39
CLN3-240ENST00000631023 ZNF181Q2M3W8 571 aa17.47■□□□□ 0.39
CLN3-240ENST00000631023 BCL2L15Q5TBC7 163 aa17.47■□□□□ 0.39
CLN3-240ENST00000631023 C1orf87Q8N0U7 546 aa17.47■□□□□ 0.39
CLN3-240ENST00000631023 LINC01356Q8N9X3 169 aa17.47■□□□□ 0.39
CLN3-240ENST00000631023 RAB39BQ96DA2 213 aa17.47■□□□□ 0.39
CLN3-240ENST00000631023 LYZL4Q96KX0 146 aa17.47■□□□□ 0.39
CLN3-240ENST00000631023 SIGLEC11Q96RL6 698 aa17.47■□□□□ 0.39
CLN3-240ENST00000631023 PAPOLGQ9BWT3 736 aaKnown RBP17.47■□□□□ 0.39
CLN3-240ENST00000631023 DAPL1A0PJW8 107 aa17.46■□□□□ 0.39
CLN3-240ENST00000631023 TMEM178BH3BS89 294 aa17.46■□□□□ 0.39
CLN3-240ENST00000631023 SRSF10O75494 262 aaKnown RBP17.46■□□□□ 0.39
CLN3-240ENST00000631023 RPP14O95059 124 aaKnown RBP17.46■□□□□ 0.39
CLN3-240ENST00000631023 PNPP00491 289 aa17.46■□□□□ 0.39
CLN3-240ENST00000631023 TGFAP01135 160 aa17.46■□□□□ 0.39
CLN3-240ENST00000631023 DBTP11182 482 aaKnown RBP17.46■□□□□ 0.39
CLN3-240ENST00000631023 IL5RAQ01344 420 aa17.46■□□□□ 0.39
CLN3-240ENST00000631023 MFGE8Q08431 387 aaPredicted RBP17.46■□□□□ 0.39
CLN3-240ENST00000631023 LIPNQ5VXI9 398 aa17.46■□□□□ 0.39
CLN3-240ENST00000631023 FAM166AQ6J272 317 aa17.46■□□□□ 0.39
CLN3-240ENST00000631023 FAM220AQ7Z4H9 259 aa17.46■□□□□ 0.39
CLN3-240ENST00000631023 KCTD20Q7Z5Y7 419 aa17.46■□□□□ 0.39
CLN3-240ENST00000631023 ACBD7Q8N6N7 88 aa17.46■□□□□ 0.39
CLN3-240ENST00000631023 SETD9Q8NE22 299 aa17.46■□□□□ 0.39
CLN3-240ENST00000631023 OR11L1Q8NGX0 322 aa17.46■□□□□ 0.39
CLN3-240ENST00000631023 ZNF420Q8TAQ5 688 aaPredicted RBP17.46■□□□□ 0.39
CLN3-240ENST00000631023 MRPL48Q96GC5 212 aaKnown RBP17.46■□□□□ 0.39
CLN3-240ENST00000631023 GAL3ST1Q99999 423 aa17.46■□□□□ 0.39
CLN3-240ENST00000631023 FN3KRPQ9HA64 309 aa17.46■□□□□ 0.39
CLN3-240ENST00000631023 ABCB9Q9NP78 766 aa17.46■□□□□ 0.39
CLN3-240ENST00000631023 OR52A1Q9UKL2 312 aa17.46■□□□□ 0.39
CLN3-240ENST00000631023 EXOGQ9Y2C4 368 aaKnown RBP17.46■□□□□ 0.39
CLN3-240ENST00000631023 RHBDD3Q9Y3P4 386 aa17.46■□□□□ 0.39
CLN3-240ENST00000631023 RPL36Q9Y3U8 105 aaKnown RBP17.46■□□□□ 0.39
CLN3-240ENST00000631023 MPC1Q9Y5U8 109 aa17.46■□□□□ 0.39
CLN3-240ENST00000631023 ANXA2P2A6NMY6 339 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 B4DSR2 109 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 J3QRE1 110 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 MTRF1O75570 445 aaKnown RBP17.45■□□□□ 0.38
CLN3-240ENST00000631023 ZNF16P17020 682 aaPredicted RBP17.45■□□□□ 0.38
CLN3-240ENST00000631023 LMO4P61968 165 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 ZNF91Q05481 1191 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 SLC34A1Q06495 639 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 ZNF684Q5T5D7 378 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 ZNF691Q5VV52 312 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 OR51E1Q8TCB6 317 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 C1orf159Q96HA4 380 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 ZNF665Q9H7R5 613 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 G6PC2Q9NQR9 355 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 GPR84Q9NQS5 396 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 DCAF16Q9NXF7 216 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 INAFM1C9JVW0 142 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 H0YHG0 523 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 PTBP3O95758 552 aaKnown RBP17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms