RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 DIMT1Q9UNQ2 313 aaKnown RBP3.49□□□□□ -1.85
LINC00540-201ENST00000611481 SIGLEC9Q9Y336 463 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 NPTNQ9Y639 398 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 HSPG2P98160 4391 aa3.49□□□□□ -1.85
LINC00540-201ENST00000611481 PPIAL4EA0A075B759 164 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 SAA2-SAA4A0A096LPE2 208 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 TRAV25A0A0B4J276 109 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 IGHV4-28A0A0C4DH34 117 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 ZNF732B4DXR9 585 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 C9JVG2 144 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 TRAPPC2LH3BP13 241 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 TIMM8AO60220 97 aaPredicted RBP3.48□□□□□ -1.85
LINC00540-201ENST00000611481 TPST2O60704 377 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 ZNF254O75437 659 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 EEDO75530 441 aaKnown RBP3.48□□□□□ -1.85
LINC00540-201ENST00000611481 FOXH1O75593 365 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 RP2O75695 350 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 TFAP2AP05549 437 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 CRYGBP07316 175 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 SERPINA6P08185 405 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 RBMY1A1P0DJD3 496 aaKnown RBP3.48□□□□□ -1.85
LINC00540-201ENST00000611481 PPIAL4FP0DN26 164 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 TSPAN8P19075 237 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 NPR2P20594 1047 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 ZNF10P21506 573 aaPredicted RBP3.48□□□□□ -1.85
LINC00540-201ENST00000611481 CTNNA2P26232 953 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 FDFT1P37268 417 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 MAGEA8P43361 318 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 RAB10P61026 200 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 STXBP1P61764 594 aaKnown RBP3.48□□□□□ -1.85
LINC00540-201ENST00000611481 SLC35A2P78381 396 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 IGLV3-21P80748 117 aaPredicted RBP3.48□□□□□ -1.85
LINC00540-201ENST00000611481 CDKL1Q00532 357 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 NAAAQ02083 359 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 MFGE8Q08431 387 aaPredicted RBP3.48□□□□□ -1.85
LINC00540-201ENST00000611481 STX5Q13190 355 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 FAM83EQ2M2I3 478 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 HIKESHIQ53FT3 197 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 C6orf226Q5I0X4 101 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 PLCXD3Q63HM9 321 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 HBMQ6B0K9 141 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 NEPROQ6NW34 567 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 ERICH5Q6P6B1 374 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 DHRS11Q6UWP2 260 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 GDPGP1Q6ZNW5 385 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 KCTD8Q6ZWB6 473 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 DPY19L4Q7Z388 723 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 ZNF100Q8IYN0 542 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 MICU2Q8IYU8 434 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 TMEM123Q8N131 208 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 KLHDC1Q8N7A1 406 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 WDR31Q8NA23 367 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 TFB1MQ8WVM0 346 aaKnown RBP3.48□□□□□ -1.85
LINC00540-201ENST00000611481 RPL3LQ92901 407 aaKnown RBP3.48□□□□□ -1.85
LINC00540-201ENST00000611481 SGK3Q96BR1 496 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 BPIFA2Q96DR5 249 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 MS4A6EQ96DS6 147 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 SH3YL1Q96HL8 342 aaPredicted RBP3.48□□□□□ -1.85
LINC00540-201ENST00000611481 TBL1YQ9BQ87 522 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 MRPL22Q9NWU5 206 aaKnown RBP3.48□□□□□ -1.85
LINC00540-201ENST00000611481 UBAP1Q9NZ09 502 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 MED11Q9P086 117 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 ZNF639Q9UID6 485 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 STUB1Q9UNE7 303 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 PDE10AQ9Y233 779 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 GSTK1Q9Y2Q3 226 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 INSIG2Q9Y5U4 225 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 PKHD1P08F94 4074 aa3.48□□□□□ -1.85
LINC00540-201ENST00000611481 IGLV5-37A0A075B6J1 123 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 A0A0J9YW62 118 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 ZCWPW2A0A1B0GU75 182 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 hDV102S1A0JD36 115 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 WASHC1A8K0Z3 465 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 CCL24O00175 119 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 CCSO14618 274 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 NBR2O15453 112 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 NIPSNAP2O75323 286 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 GAGE7O76087 117 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 IGHV4-59P01825 116 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 CRYAAP02489 173 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 GSTT2P0CG29 244 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 GSTT2BP0CG30 244 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 GAGE12FP0CL80 117 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 GAGE12GP0CL81 117 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 GAGE12IP0CL82 117 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 SRMP19623 302 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 GPX3P22352 226 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 ACKR3P25106 362 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 LAP3P28838 519 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 C21orf33P30042 268 aaPredicted RBP3.47□□□□□ -1.85
LINC00540-201ENST00000611481 KLK7P49862 253 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 ERVK11-1P61568 191 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 REEP5Q00765 189 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 GAGE1Q13065 139 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 GAGE4Q13068 117 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 ZNF239Q16600 458 aaKnown RBP3.47□□□□□ -1.85
LINC00540-201ENST00000611481 SLC35D3Q5M8T2 416 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 AGBL2Q5U5Z8 902 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 C9orf135Q5VTT2 229 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 SLC35E4Q6ICL7 350 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms